Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CPE	1363	broad.mit.edu	37	4	166388891	166388891	+	Missense_Mutation	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr4:166388891G>T	ENST00000402744.4	+	3	836	c.556G>T	c.(556-558)Gat>Tat	p.D186Y		NM_001873.2	NP_001864.1	P16870	CBPE_HUMAN	carboxypeptidase E	186					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			endometrium(2)|large_intestine(10)|lung(9)|ovary(1)|prostate(1)|skin(2)|urinary_tract(1)	26	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCAGGGAATAGATCTGAACCG	0.368000													19	45					4.96729e-08	5.47938e-08	1	1	0
ATP9A	10079	broad.mit.edu	37	20	50290746	50290746	+	Missense_Mutation	SNP	C	C	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:50290746C>A	ENST00000338821.5	-	11	1247	c.983G>T	c.(982-984)tGg>tTg	p.W328L	ATP9A_ENST00000402822.1_Missense_Mutation_p.W207L|ATP9A_ENST00000311637.5_Missense_Mutation_p.W192L	NM_006045.1	NP_006036.1	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	328					ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(2)|cervix(2)|endometrium(6)|kidney(1)|large_intestine(10)|lung(18)|ovary(5)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	48						CTGCAGGTACCAACGGCCTGC	0.537000													4	133					0.150653	0.152075	1	1	0
MYO18A	399687	broad.mit.edu	37	17	27434147	27434147	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr17:27434147T>C	ENST00000527372.1	-	20	3572	c.3392A>G	c.(3391-3393)cAc>cGc	p.H1131R	MYO18A_ENST00000531253.1_Missense_Mutation_p.H1131R|MYO18A_ENST00000354329.4_Missense_Mutation_p.H1131R|MYO18A_ENST00000533112.1_Missense_Mutation_p.H1131R	NM_078471.3	NP_510880.2	Q92614	MY18A_HUMAN	myosin XVIIIA	1131	Myosin head-like.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity			NS(1)|cervix(1)|endometrium(6)|kidney(6)|lung(20)|urinary_tract(2)	36			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CTTGGTCAGGTGCGGGGCCAG	0.622000													26	66					0	0	1	0	0
DDIT3	1649	broad.mit.edu	37	12	57910912	57910912	+	Missense_Mutation	SNP	T	T	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr12:57910912T>G	ENST00000551116.1	-	4	526	c.259A>C	c.(259-261)Act>Cct	p.T87P	DDIT3_ENST00000547303.1_Missense_Mutation_p.T64P|DDIT3_ENST00000346473.3_Missense_Mutation_p.T64P|DDIT3_ENST00000552740.1_Missense_Mutation_p.T87P	NM_001195053.1|NM_001195054.1|NM_001195055.1|NM_001195056.1	NP_001181982.1|NP_001181983.1|NP_001181984.1|NP_001181985.1	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	64					cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		EWSR1/DDIT3(45)|FUS/DDIT3(631)	central_nervous_system(1)|large_intestine(3)|lung(7)|ovary(2)|prostate(2)|skin(1)	16						TCCTCCTCAGTCAGCCAAGCC	0.507000			T	FUS	liposarcoma								57	26					0	0	1	0	0
CEP350	9857	broad.mit.edu	37	1	179983174	179983174	+	Missense_Mutation	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:179983174G>T	ENST00000367607.3	+	10	2004	c.1586G>T	c.(1585-1587)cGt>cTt	p.R529L		NM_014810.4	NP_055625.4	Q5VT06	CE350_HUMAN	centrosomal protein 350kDa	529						centrosome|nucleus|spindle				central_nervous_system(1)|endometrium(9)|kidney(4)|large_intestine(7)|lung(35)|ovary(4)|prostate(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	66						ATTGAAATTCGTGGCATTCTT	0.388000													10	18					1.76689e-08	1.99008e-08	1	1	0
MEX3A	92312	broad.mit.edu	37	1	156046556	156046556	+	Missense_Mutation	SNP	C	C	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:156046556C>A	ENST00000532414.2	-	2	1371	c.1372G>T	c.(1372-1374)Ggc>Tgc	p.G458C		NM_001093725.1	NP_001087194.1	A1L020	MEX3A_HUMAN	mex-3 RNA binding family member A	458	Poly-Gly.					cytoplasmic mRNA processing body|nucleus	RNA binding|zinc ion binding			endometrium(2)|kidney(1)|large_intestine(3)|lung(3)	9	Hepatocellular(266;0.158)|all_neural(408;0.195)					CGCAGGCCGCCCCCACCAAGT	0.701000													4	22					1	1	1	1	0
ZNF420	147923	broad.mit.edu	37	19	37619738	37619738	+	Silent	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:37619738T>C	ENST00000337995.3	+	5	2060	c.1845T>C	c.(1843-1845)taT>taC	p.Y615Y	ZNF420_ENST00000586540.1_3'UTR|CTC-454I21.4_ENST00000587645.1_RNA|ZNF585A_ENST00000588723.1_Intron|ZNF420_ENST00000304239.7_Intron	NM_144689.3	NP_653290.2	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	615					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|endometrium(2)|large_intestine(9)|lung(10)|prostate(1)|skin(3)	27			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGAAGCCCTATGAATGCAGAG	0.433000													18	52					0	0	1	0	0
SLC25A13	10165	broad.mit.edu	37	7	95799415	95799415	+	Missense_Mutation	SNP	T	T	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:95799415T>G	ENST00000416240.2	-	13	1446	c.1256A>C	c.(1255-1257)aAa>aCa	p.K419T	SLC25A13_ENST00000542654.1_Missense_Mutation_p.K310T|SLC25A13_ENST00000265631.5_Missense_Mutation_p.K418T	NM_001160210.1|NM_014251.2	NP_001153682.1|NP_055066.1	Q9UJS0	CMC2_HUMAN	solute carrier family 25 (aspartate/glutamate carrier), member 13	418					ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			breast(4)|central_nervous_system(3)|endometrium(4)|kidney(2)|large_intestine(8)|liver(2)|lung(14)|prostate(1)|skin(4)	42	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	GTGCATAAATTTATCCCTCAC	0.343000													50	229					0	0	1	0	0
CLCNKB	1188	broad.mit.edu	37	1	16378296	16378296	+	Silent	SNP	A	A	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:16378296A>C	ENST00000375679.4	+	14	1500	c.1389A>C	c.(1387-1389)ccA>ccC	p.P463P	CLCNKB_ENST00000375667.3_Silent_p.P294P	NM_000085.4	NP_000076.2			chloride channel, voltage-sensitive Kb											breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(4)|ovary(2)|prostate(1)|skin(6)|stomach(2)|urinary_tract(1)	21		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CCATCATGCCAGGGGGGTATG	0.622000													4	111					0	0	1	0	0
NPAP1	23742	broad.mit.edu	37	15	24922991	24922991	+	Silent	SNP	T	T	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr15:24922991T>G	ENST00000329468.2	+	1	2451	c.1977T>G	c.(1975-1977)gcT>gcG	p.A659A		NM_018958.2	NP_061831.2			nuclear pore associated protein 1																		CGCAGAAAGCTTCTCTCCCCA	0.493000													76	53					0	0	1	0	0
CROCCP3	114819	broad.mit.edu	37	1	16812970	16812970	+	RNA	SNP	C	C	A	rs150878633	by1000genomes	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:16812970C>A	ENST00000263511.4	-	0	1341					NR_023386.1																						TGCTGCTGGGCCAGGTCCTTC	0.647000													5	25					0.014758	0.0150391	1	1	0
THOC5	8563	broad.mit.edu	37	22	29927851	29927851	+	Missense_Mutation	SNP	A	A	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr22:29927851A>C	ENST00000490103.1	-	8	938	c.816T>G	c.(814-816)ttT>ttG	p.F272L	THOC5_ENST00000397873.2_Missense_Mutation_p.F272L|CTA-256D12.11_ENST00000411969.1_RNA|THOC5_ENST00000397871.1_Missense_Mutation_p.F272L|THOC5_ENST00000397872.1_Missense_Mutation_p.F272L	NM_003678.4	NP_003669.4	Q13769	THOC5_HUMAN	THO complex 5	272					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			NS(1)|breast(4)|cervix(1)|endometrium(2)|large_intestine(4)|lung(7)|upper_aerodigestive_tract(1)|urinary_tract(1)	21						TGGCCTGAACAAAGAGGACAT	0.587000													40	33					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161302645	161302645	+	Missense_Mutation	SNP	A	A	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:161302645A>C	ENST00000428797.2	+	7	911	c.556A>C	c.(556-558)Agt>Cgt	p.S186R	GABRA1_ENST00000444819.1_Missense_Mutation_p.S186R|GABRA1_ENST00000393943.4_Missense_Mutation_p.S186R|GABRA1_ENST00000420560.1_Missense_Mutation_p.S186R|GABRA1_ENST00000023897.6_Missense_Mutation_p.S186R|GABRA1_ENST00000437025.2_Missense_Mutation_p.S186R	NM_001127643.1	NP_001121115.1	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha 1	186					gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			NS(1)|endometrium(2)|kidney(3)|large_intestine(4)|liver(1)|lung(22)|ovary(2)|pancreas(2)|prostate(1)|skin(3)|urinary_tract(1)	42	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	AAAATTTGGAAGTTGTGAGTA	0.398000													21	95					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168282089	168282089	+	Missense_Mutation	SNP	C	C	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:168282089C>A	ENST00000367821.3	+	8	1247	c.1196C>A	c.(1195-1197)gCa>gAa	p.A399E	TBX19_ENST00000465440.1_3'UTR	NM_005149.2	NP_005140.1	O60806	TBX19_HUMAN	T-box 19	399					anatomical structure morphogenesis	nucleus	DNA binding			NS(1)|breast(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(7)|liver(1)|lung(11)|prostate(2)|skin(2)|urinary_tract(1)	34	all_hematologic(923;0.215)					TCCACCCAAGCACCCACTTCG	0.652000													17	87					1.15088e-07	1.24388e-07	1	1	0
SLIT3	6586	broad.mit.edu	37	5	168176494	168176494	+	Missense_Mutation	SNP	T	T	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:168176494T>A	ENST00000519560.1	-	19	2539	c.2120A>T	c.(2119-2121)cAg>cTg	p.Q707L	SLIT3_ENST00000404867.3_Missense_Mutation_p.Q707L|SLIT3_ENST00000332966.8_Missense_Mutation_p.Q707L	NM_001271946.1|NM_003062.2	NP_001258875.1|NP_003053.1	O75094	SLIT3_HUMAN	slit homolog 3 (Drosophila)	707	LRRCT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(15)|liver(2)|lung(48)|ovary(4)|prostate(7)|skin(6)|upper_aerodigestive_tract(3)|urinary_tract(1)	100	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTGAAGTCCTGGATGGCCAC	0.557000													41	116					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147183081	147183081	+	Missense_Mutation	SNP	C	C	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:147183081C>G	ENST00000361727.3	+	11	2241	c.1725C>G	c.(1723-1725)agC>agG	p.S575R		NM_014141.5	NP_054860.1	Q9UHC6	CNTP2_HUMAN	contactin associated protein-like 2	575	EGF-like 1.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			NS(3)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(21)|lung(105)|ovary(9)|pancreas(2)|prostate(5)|skin(7)|stomach(3)|upper_aerodigestive_tract(6)|urinary_tract(3)	188	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CATGGGACAGCTTCAAATGCA	0.438000										HNSCC(39;0.1)			19	268					0	0	1	0	0
FAM227B	196951	broad.mit.edu	37	15	49860489	49860489	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr15:49860489T>C	ENST00000299338.6	-	9	1003	c.700A>G	c.(700-702)Aca>Gca	p.T234A	FAM227B_ENST00000561064.1_Intron	NM_152647.2	NP_689860.2			family with sequence similarity 227, member B																		ATGAAAAGTGTCACATAACTT	0.284000													25	17					0	0	1	0	0
ITPR3	3710	broad.mit.edu	37	6	33632866	33632866	+	Missense_Mutation	SNP	T	T	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:33632866T>G	ENST00000374316.5	+	14	2345	c.1285T>G	c.(1285-1287)Ttt>Gtt	p.F429V	ITPR3_ENST00000605930.1_Missense_Mutation_p.F429V			Q14573	ITPR3_HUMAN	inositol 1,4,5-trisphosphate receptor, type 3	429	MIR 5.				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			NS(1)|breast(6)|central_nervous_system(5)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(18)|liver(1)|lung(24)|ovary(8)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(2)	85						CAAGGAGGCCTTTGCCATCGT	0.647000													39	224					0	0	1	0	0
NFIC	4782	broad.mit.edu	37	19	3382150	3382150	+	Silent	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:3382150C>T	ENST00000589123.1	+	2	564	c.444C>T	c.(442-444)tgC>tgT	p.C148C	NFIC_ENST00000586919.1_Silent_p.C148C|NFIC_ENST00000443272.2_Silent_p.C157C|NFIC_ENST00000395111.3_Silent_p.C148C|NFIC_ENST00000590282.1_Silent_p.C157C|NFIC_ENST00000346156.5_Silent_p.C148C|NFIC_ENST00000341919.3_Silent_p.C157C	NM_001245005.1|NM_205843.2	NP_001231934.1|NP_995315.1	P08651	NFIC_HUMAN	nuclear factor I/C (CCAAT-binding transcription factor)	157					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			NS(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(10)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	21		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		CTGCGCAGTGCGGTCACCCGG	0.657000													4	122					0	0	1	0	0
TBX3	6926	broad.mit.edu	37	12	115120653	115120653	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr12:115120653T>C	ENST00000349155.2	-	1	1316	c.353A>G	c.(352-354)aAg>aGg	p.K118R	TBX3_ENST00000257566.3_Missense_Mutation_p.K118R	NM_005996.3	NP_005987.3	O15119	TBX3_HUMAN	T-box 3	118					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			breast(5)|endometrium(1)|kidney(1)|large_intestine(6)|lung(21)|ovary(3)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	47	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		GGTGCCCCGCTTGTGAAACTG	0.547000													23	72					0	0	1	0	0
C6orf25	80739	broad.mit.edu	37	6	31691431	31691431	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:31691431G>A	ENST00000375809.3	+	2	88	c.77G>A	c.(76-78)cGc>cAc	p.R26H	C6orf25_ENST00000375805.2_Missense_Mutation_p.R26H|C6orf25_ENST00000480039.1_Missense_Mutation_p.R26H|C6orf25_ENST00000375810.4_Missense_Mutation_p.R26H	NM_025260.3|NM_138272.2|NM_138277.2	NP_079536.2|NP_612116.1|NP_612121.1	O95866	G6B_HUMAN	chromosome 6 open reading frame 25	26						endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	heparin binding|receptor activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(3)	9						CTGGACGGCCGCCCTGGGGAC	0.637000													15	86					0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:115256529T>C	ENST00000369535.4	-	3	435	c.182A>G	c.(181-183)cAa>cGa	p.Q61R		NM_002524.4	NP_002515.1	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61			Q -> K (in neuroblastoma cell).|Q -> R (in lung carcinoma cell and melanoma; dbSNP:rs11554290).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(817)|p.Q61L(175)|p.Q61P(23)|p.Q61K(1)		NS(134)|adrenal_gland(9)|autonomic_ganglia(9)|biliary_tract(6)|bone(1)|breast(9)|central_nervous_system(10)|cervix(2)|endometrium(11)|eye(3)|haematopoietic_and_lymphoid_tissue(1115)|kidney(3)|large_intestine(105)|liver(10)|lung(42)|meninges(2)|ovary(7)|pancreas(5)|prostate(8)|skin(1144)|soft_tissue(37)|stomach(5)|testis(8)|thyroid(359)|upper_aerodigestive_tract(28)|urinary_tract(13)	3085	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(C3A_LIVER)|Q61L(HEPG2_LIVER)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MELJUSO_SKIN)|Q61L(MHHES1_BONE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(HT1197_URINARY_TRACT)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(KU1919_URINARY_TRACT)|Q61R(NCIH2347_LUNG)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(SKMEL2_SKIN)|Q61R(SW1271_LUNG)|Q61R(TT2609C02_THYROID)	50	Mis		"""melanoma, MM, AML, thyroid"""				Noonan syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			109	65					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13870934	13870934	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:13870934G>A	ENST00000265104.4	-	24	3880	c.3776C>T	c.(3775-3777)gCg>gTg	p.A1259V	CTB-51A17.1_ENST00000503244.1_RNA	NM_001369.2	NP_001360.1	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1259	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(6)|breast(14)|central_nervous_system(4)|cervix(2)|endometrium(23)|haematopoietic_and_lymphoid_tissue(8)|kidney(11)|large_intestine(85)|liver(1)|lung(129)|ovary(16)|pancreas(2)|prostate(5)|skin(48)|stomach(5)|upper_aerodigestive_tract(11)|urinary_tract(8)	378	Lung NSC(4;0.00476)					TTCTTTCAGCGCTGCCATTGC	0.343000									Kartagener syndrome				14	78					0	0	1	0	0
FAM166A	401565	broad.mit.edu	37	9	140138224	140138224	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr9:140138224G>T	ENST00000344774.4	-	7	936	c.882C>A	c.(880-882)taC>taA	p.Y294*		NM_001001710.1	NP_001001710.1	Q6J272	F166A_HUMAN	family with sequence similarity 166, member A	294										kidney(3)|lung(7)|ovary(2)|prostate(1)|urinary_tract(2)	15						ATGTCAGGGCGTAGTTGTCCT	0.572000													16	132					4.14922e-12	4.82572e-12	1	1	0
TOM1L1	10040	broad.mit.edu	37	17	53037958	53037958	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr17:53037958C>T	ENST00000575882.1	+	15	1755	c.1402C>T	c.(1402-1404)Cac>Tac	p.H468Y	TOM1L1_ENST00000536554.1_Missense_Mutation_p.H391Y|COX11_ENST00000573912.1_Intron|TOM1L1_ENST00000540336.1_Missense_Mutation_p.H356Y|TOM1L1_ENST00000348161.4_Missense_Mutation_p.H391Y|TOM1L1_ENST00000445275.2_Missense_Mutation_p.H457Y|TOM1L1_ENST00000572158.1_Missense_Mutation_p.H461Y	NM_005486.2	NP_005477.2	O75674	TM1L1_HUMAN	target of myb1 (chicken)-like 1	468					intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			cervix(1)|endometrium(2)|kidney(3)|large_intestine(1)|lung(5)|ovary(1)|prostate(1)|skin(1)	15						TGCTCACCAGCACAAAGGAGC	0.323000													21	60					0	0	1	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179545806	179545806	+	Missense_Mutation	SNP	G	G	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:179545806G>C	ENST00000393371.2	-	8	1264	c.968C>G	c.(967-969)gCc>gGc	p.A323G	RASGEF1C_ENST00000361132.4_Missense_Mutation_p.A323G|RASGEF1C_ENST00000522500.1_Missense_Mutation_p.A172G			Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	323	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			breast(1)|kidney(2)|large_intestine(3)|lung(3)|ovary(1)|prostate(1)|stomach(1)	12	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAAAAACTTGGCCGTCCTCAC	0.612000													38	127					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149907017	149907017	+	Silent	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:149907017G>A	ENST00000439741.2	-	5	580	c.330C>T	c.(328-330)agC>agT	p.S110S	MTMR11_ENST00000492824.1_5'UTR|MTMR11_ENST00000361405.6_Silent_p.S110S|MTMR11_ENST00000369140.3_Silent_p.S38S|MTMR11_ENST00000406732.3_Silent_p.S82S	NM_001145862.1	NP_001139334.1	A4FU01	MTMRB_HUMAN	myotubularin related protein 11	110							phosphatase activity			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(13)|prostate(2)|stomach(1)|urinary_tract(4)	34	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			GGGACAAGCCGCTCACTGAAG	0.542000													27	159					0	0	1	0	0
SRC	6714	broad.mit.edu	37	20	36028624	36028624	+	Silent	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:36028624T>C	ENST00000373578.2	+	10	1315	c.966T>C	c.(964-966)caT>caC	p.H322H	SRC_ENST00000358208.4_Silent_p.H322H|SRC_ENST00000445403.1_Silent_p.H322H|SRC_ENST00000373558.2_Silent_p.H328H|SRC_ENST00000360723.4_Silent_p.H328H|SRC_ENST00000373567.2_Silent_p.H322H|SRC_ENST00000477066.1_3'UTR	NM_198291.1	NP_938033.1	P12931	SRC_HUMAN	v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog	322	Protein kinase.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			NS(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(16)|lung(4)|ovary(1)|prostate(1)|urinary_tract(1)	30		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	AGCTGAGGCATGAGAAGCTGG	0.592000													14	104					0	0	1	0	0
STT3A	3703	broad.mit.edu	37	11	125472307	125472307	+	Missense_Mutation	SNP	A	A	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr11:125472307A>T	ENST00000392708.4	+	4	418	c.259A>T	c.(259-261)Aca>Tca	p.T87S	STT3A_ENST00000531491.1_5'UTR|STT3A_ENST00000529196.1_Missense_Mutation_p.T87S	NM_001278503.1|NM_001278504.1|NM_152713.3	NP_001265432.1|NP_001265433.1|NP_689926.1	P46977	STT3A_HUMAN	STT3A, subunit of the oligosaccharyltransferase complex (catalytic)	87					post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity			NS(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(3)|lung(15)|skin(1)	33	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		CATTGGAGGAACAATTTACCC	0.383000													10	15					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158224770	158224770	+	Missense_Mutation	SNP	C	C	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr4:158224770C>G	ENST00000296526.7	+	3	621	c.296C>G	c.(295-297)aCc>aGc	p.T99S	GRIA2_ENST00000264426.9_Missense_Mutation_p.T99S|GRIA2_ENST00000507898.1_Missense_Mutation_p.T52S|GRIA2_ENST00000504801.1_3'UTR|GRIA2_ENST00000449365.1_Missense_Mutation_p.T52S|GRIA2_ENST00000393815.2_Missense_Mutation_p.T52S	NM_000826.3	NP_000817.2	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2	99					synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			NS(1)|breast(2)|central_nervous_system(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(16)|liver(2)|lung(32)|ovary(3)|prostate(3)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	79	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TCTGTAAATACCATCACATCA	0.418000													25	83					0	0	1	0	0
FUT1	2523	broad.mit.edu	37	19	49254345	49254345	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:49254345T>C	ENST00000310160.3	-	4	1168	c.194A>G	c.(193-195)aAc>aGc	p.N65S		NM_000148.3	NP_000139.1	P19526	FUT1_HUMAN	fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)	65					L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to plasma membrane|membrane fraction	galactoside 2-alpha-L-fucosyltransferase activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(3)|ovary(1)|skin(2)|stomach(1)|urinary_tract(1)	17		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000135)|all cancers(93;0.000354)|Epithelial(262;0.0191)|GBM - Glioblastoma multiforme(486;0.0222)		AGAGGAGGCGTTGGGGCCCAT	0.627000													10	30					0	0	1	0	0
FAM63B	54629	broad.mit.edu	37	15	59064076	59064076	+	Missense_Mutation	SNP	G	G	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr15:59064076G>C	ENST00000559228.1	+	1	564	c.482G>C	c.(481-483)tGc>tCc	p.C161S	FAM63B_ENST00000450403.2_Missense_Mutation_p.C161S			Q8NBR6	FA63B_HUMAN	family with sequence similarity 63, member B	161										central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(1)|liver(2)|lung(4)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1)	15						AGCAGCAGTTGCAGCGACCCG	0.652000													8	51					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554656	140554656	+	Missense_Mutation	SNP	A	A	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:140554656A>G	ENST00000231137.3	+	1	2414	c.2240A>G	c.(2239-2241)tAc>tGc	p.Y747C		NM_018940.2	NP_061763.1	Q9Y5E2	PCDB7_HUMAN		747					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(2)|breast(2)|central_nervous_system(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(20)|lung(54)|ovary(5)|prostate(7)|skin(7)|upper_aerodigestive_tract(4)|urinary_tract(1)	119			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCAGAGCTACCAGTATGAG	0.607000													50	151					0	0	1	0	0
TRIP11	9321	broad.mit.edu	37	14	92461742	92461742	+	Silent	SNP	A	A	G	rs149334552	byFrequency	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr14:92461742A>G	ENST00000267622.4	-	14	5383	c.5010T>C	c.(5008-5010)gcT>gcC	p.A1670A		NM_004239.3	NP_004230.2	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1670				A -> R (in Ref. 1; AAD09135).	transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			breast(3)|central_nervous_system(2)|endometrium(1)|kidney(8)|large_intestine(12)|lung(17)|ovary(7)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	58				COAD - Colon adenocarcinoma(157;0.223)		CCAGTGACAGAGCATACTGCT	0.418000			T	PDGFRB	AML								8	60					0	0	1	0	0
DDX41	51428	broad.mit.edu	37	5	176939832	176939832	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:176939832C>T	ENST00000507955.1	-	13	1871	c.1348G>A	c.(1348-1350)Gag>Aag	p.E450K		NM_016222.2	NP_057306.2	Q9UJV9	DDX41_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	450	Helicase C-terminal.				apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding	p.E450*(1)				all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			AGCAGGTACTCGTGGATGGCG	0.602000													51	204					0	0	1	0	0
VWA5A	4013	broad.mit.edu	37	11	124007882	124007882	+	Missense_Mutation	SNP	A	A	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr11:124007882A>C	ENST00000456829.2	+	15	2037	c.1786A>C	c.(1786-1788)Aac>Cac	p.N596H	VWA5A_ENST00000360334.4_Intron|VWA5A_ENST00000392748.1_Missense_Mutation_p.N596H	NM_001130142.1	NP_001123614.1	O00534	VMA5A_HUMAN	von Willebrand factor A domain containing 5A	596										autonomic_ganglia(1)|breast(3)|endometrium(5)|kidney(2)|large_intestine(11)|lung(17)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	47						TAAGGAGCTCAACAAGCCGGT	0.473000													27	35					0	0	1	0	0
SLC22A12	116085	broad.mit.edu	37	11	64368212	64368212	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr11:64368212C>T	ENST00000377574.1	+	9	2147	c.1400C>T	c.(1399-1401)aCg>aTg	p.T467M	SLC22A12_ENST00000336464.7_Missense_Mutation_p.T433M|SLC22A12_ENST00000473690.1_Missense_Mutation_p.T246M|SLC22A12_ENST00000377572.1_Missense_Mutation_p.T359M|SLC22A12_ENST00000377567.2_Missense_Mutation_p.T359M	NM_144585.2	NP_653186.2	Q96S37	S22AC_HUMAN	solute carrier family 22 (organic anion/urate transporter), member 12	467					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(2)|lung(9)|ovary(2)|prostate(2)|skin(4)|upper_aerodigestive_tract(1)	27						GGCAGGATGACGGCAGTGGGC	0.677000													21	31					0	0	1	0	0
IQGAP1	8826	broad.mit.edu	37	15	90982589	90982589	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr15:90982589G>A	ENST00000268182.5	+	6	617	c.493G>A	c.(493-495)Gcc>Acc	p.A165T	IQGAP1_ENST00000560738.1_Intron	NM_003870.3	NP_003861.1	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	165					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			breast(2)|central_nervous_system(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(14)|liver(1)|lung(18)|ovary(2)|pancreas(1)|prostate(3)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	59	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			GCTAGGCCTGGCCCCTCAGAT	0.458000													34	18					0	0	1	0	0
NUMA1	4926	broad.mit.edu	37	11	71724439	71724439	+	Silent	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr11:71724439C>T	ENST00000393695.3	-	15	4441	c.4110G>A	c.(4108-4110)ctG>ctA	p.L1370L	NUMA1_ENST00000358965.6_Silent_p.L1370L|NUMA1_ENST00000351960.6_Intron	NM_006185.2	NP_006176.2	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1370					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(12)|lung(20)|ovary(5)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	65						GCTCGGCCTGCAGCTGCTGGC	0.682000			T	RARA	APL								6	21					0	0	1	0	0
FBXW7	55294	broad.mit.edu	37	4	153253809	153253809	+	Nonsense_Mutation	SNP	A	A	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr4:153253809A>T	ENST00000281708.4	-	6	2153	c.924T>A	c.(922-924)tgT>tgA	p.C308*	FBXW7_ENST00000296555.5_Nonsense_Mutation_p.C190*|FBXW7_ENST00000603548.1_Nonsense_Mutation_p.C308*|FBXW7_ENST00000603841.1_Nonsense_Mutation_p.C308*|FBXW7_ENST00000393956.3_Nonsense_Mutation_p.C132*|FBXW7_ENST00000263981.5_Nonsense_Mutation_p.C228*	NM_033632.3	NP_361014.1	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase	308	F-box.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleoplasm|SCF ubiquitin ligase complex	protein binding	p.?(1)		NS(1)|biliary_tract(8)|bone(1)|breast(5)|central_nervous_system(6)|cervix(2)|endometrium(36)|haematopoietic_and_lymphoid_tissue(159)|kidney(6)|large_intestine(155)|lung(31)|ovary(10)|pancreas(3)|prostate(2)|skin(6)|stomach(16)|upper_aerodigestive_tract(9)|urinary_tract(6)	462	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TCCAGTAGCGACATGTCTGAG	0.378000			"""Mis, N, D, F"""		"""colorectal, endometrial, T-ALL"""								15	43					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50532116	50532116	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr10:50532116G>A	ENST00000374144.3	+	3	1814	c.1526G>A	c.(1525-1527)cGt>cAt	p.R509H	C10orf71_ENST00000323868.4_Missense_Mutation_p.R509H			Q711Q0	CJ071_HUMAN	chromosome 10 open reading frame 71	509										endometrium(1)	1						GTGCGGAAGCGTGTTAAGAGC	0.493000													11	19					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114270015	114270015	+	Silent	SNP	A	A	G	rs146945410	byFrequency	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:114270015A>G	ENST00000393500.3	+	11	1147	c.327A>G	c.(325-327)caA>caG	p.Q109Q	FOXP2_ENST00000390668.3_Silent_p.Q208Q|FOXP2_ENST00000393494.2_Silent_p.Q184Q|FOXP2_ENST00000403559.4_Silent_p.Q201Q|FOXP2_ENST00000393498.2_Silent_p.Q164Q|FOXP2_ENST00000350908.4_Silent_p.Q184Q|FOXP2_ENST00000393491.3_Silent_p.Q92Q|FOXP2_ENST00000360232.4_Silent_p.Q184Q|FOXP2_ENST00000408937.3_Silent_p.Q209Q|FOXP2_ENST00000393489.3_Silent_p.Q92Q|FOXP2_ENST00000378237.3_Silent_p.Q184Q			O15409	FOXP2_HUMAN	forkhead box P2	184	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(3)|endometrium(7)|kidney(4)|large_intestine(7)|lung(22)|ovary(4)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	52						agcagcagcaacagcagcagc	0.502000													5	149					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69646512	69646512	+	Missense_Mutation	SNP	A	A	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:69646512A>T	ENST00000370598.1	+	5	1791	c.970A>T	c.(970-972)Aca>Tca	p.T324S		NM_001704.2	NP_001695.1	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	324	TSP type-1 1.				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(2)|breast(4)|central_nervous_system(5)|endometrium(5)|kidney(2)|large_intestine(28)|liver(1)|lung(111)|ovary(10)|pancreas(4)|prostate(7)|skin(22)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(4)	210		all_lung(197;0.212)				ACCTTACGGGACACACTGCAG	0.493000													8	17					0	0	1	0	0
SP100	6672	broad.mit.edu	37	2	231404024	231404024	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr2:231404024C>T	ENST00000340126.4	+	25	2168	c.2137C>T	c.(2137-2139)Cgg>Tgg	p.R713W	AC010149.4_ENST00000455357.1_RNA|AC010149.4_ENST00000414539.1_RNA	NM_001080391.1	NP_001073860.1	P23497	SP100_HUMAN	SP100 nuclear antigen	0					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(4)|lung(12)|ovary(4)|upper_aerodigestive_tract(1)	25		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CAAATGGGGACGGCTGTTCTG	0.498000													27	85					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159175977	159175977	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:159175977T>C	ENST00000537147.1	+	3	1591	c.748T>C	c.(748-750)Ttt>Ctt	p.F250L	DARC_ENST00000368121.2_Missense_Mutation_p.F252L|DARC_ENST00000368122.2_Missense_Mutation_p.F250L			Q16570	DUFFY_HUMAN	Duffy blood group, atypical chemokine receptor	250					defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			large_intestine(2)|lung(1)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)	8	all_hematologic(112;0.0429)					GTGGGCCTGGTTTATTTTCTG	0.537000													43	202					0	0	1	0	0
FBXL5	26234	broad.mit.edu	37	4	15614017	15614017	+	Missense_Mutation	SNP	C	C	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr4:15614017C>A	ENST00000341285.3	-	10	1995	c.1871G>T	c.(1870-1872)gGg>gTg	p.G624V	FBXL5_ENST00000412094.2_Missense_Mutation_p.G607V|FBXL5_ENST00000382358.4_Missense_Mutation_p.G498V	NM_001193534.1|NM_001193535.1|NM_012161.3	NP_001180463.1|NP_001180464.1|NP_036293.1	Q9UKA1	FBXL5_HUMAN	F-box and leucine-rich repeat protein 5	624					iron ion homeostasis|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|SCF ubiquitin ligase complex	iron ion binding|protein binding|ubiquitin-protein ligase activity			endometrium(2)|large_intestine(3)|lung(5)|ovary(1)|pancreas(1)|prostate(1)	13						ATAAGGCAGCCCTCCTCCCAG	0.388000													14	50					1.15088e-07	1.24388e-07	1	1	0
REPS1	85021	broad.mit.edu	37	6	139262535	139262535	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:139262535C>T	ENST00000450536.2	-	8	1646	c.1072G>A	c.(1072-1074)Gat>Aat	p.D358N	REPS1_ENST00000367663.4_Missense_Mutation_p.D358N|REPS1_ENST00000258062.5_Missense_Mutation_p.D358N|REPS1_ENST00000409812.2_Missense_Mutation_p.D358N|REPS1_ENST00000415951.2_Missense_Mutation_p.D358N			Q96D71	REPS1_HUMAN	RALBP1 associated Eps domain containing 1	358	EH 2.					coated pit|plasma membrane	calcium ion binding|SH3 domain binding			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(8)|upper_aerodigestive_tract(2)	19				GBM - Glioblastoma multiforme(68;0.000434)|OV - Ovarian serous cystadenocarcinoma(155;0.000548)		TCTGGTAAATCATAGCCATTC	0.418000													50	51					0	0	1	0	0
SLC24A1	9187	broad.mit.edu	37	15	65946280	65946280	+	Missense_Mutation	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr15:65946280G>T	ENST00000261892.6	+	10	3450	c.3163G>T	c.(3163-3165)Gtg>Ttg	p.V1055L	SLC24A1_ENST00000546330.1_Missense_Mutation_p.V1037L|SLC24A1_ENST00000399033.4_Missense_Mutation_p.V1025L|SLC24A1_ENST00000537259.1_Intron|SLC24A1_ENST00000339868.6_Missense_Mutation_p.V1037L|SLC24A1_ENST00000544319.2_Missense_Mutation_p.V941L|SLC24A1_ENST00000449142.2_3'UTR	NM_001254740.1|NM_004727.2	NP_001241669.1|NP_004718.1	O60721	NCKX1_HUMAN	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	1055					response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity	p.V1055M(1)		breast(2)|endometrium(7)|kidney(1)|large_intestine(4)|lung(6)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	23						GCTTCTGTTTGTGATCTCTTC	0.388000													17	122					1.33834e-09	1.52343e-09	1	1	0
KNDC1	85442	broad.mit.edu	37	10	135010589	135010589	+	Missense_Mutation	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr10:135010589G>T	ENST00000304613.3	+	11	1783	c.1762G>T	c.(1762-1764)Ggc>Tgc	p.G588C	KNDC1_ENST00000368572.2_Missense_Mutation_p.G588C|KNDC1_ENST00000368571.2_Missense_Mutation_p.G523C			Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND) containing 1	588	KIND 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					NS(4)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(27)|ovary(1)|prostate(5)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	60		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CCTCCAGCGAGGCATGGACAG	0.657000													21	23					3.65163e-15	4.34138e-15	1	1	0
B4GALT2	8704	broad.mit.edu	37	1	44447428	44447428	+	Silent	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:44447428C>T	ENST00000356836.6	+	3	1171	c.381C>T	c.(379-381)ggC>ggT	p.G127G	B4GALT2_ENST00000434555.2_Silent_p.G61G|B4GALT2_ENST00000372324.1_Silent_p.G127G|B4GALT2_ENST00000309519.7_Silent_p.G156G	NM_001005417.2|NM_030587.2	NP_001005417.1|NP_085076.2	O60909	B4GT2_HUMAN	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	127					post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity			endometrium(4)|large_intestine(3)|lung(5)|ovary(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	17	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	AGAACCCAGGCGTGCTCATGG	0.632000													24	92					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39016026	39016026	+	Missense_Mutation	SNP	T	T	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:39016026T>G	ENST00000355481.4	+	70	10626	c.10495T>G	c.(10495-10497)Tct>Gct	p.S3499A	RYR1_ENST00000360985.3_Missense_Mutation_p.S3504A|RYR1_ENST00000359596.3_Missense_Mutation_p.S3504A	NM_000540.2|NM_001042723.1	NP_000531.2|NP_001036188.1	P21817	RYR1_HUMAN	ryanodine receptor 1 (skeletal)	3504					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGACCGGTACTCTGTGCAGAC	0.622000													38	102					0	0	1	0	0
MACROD2	140733	broad.mit.edu	37	20	15913923	15913923	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:15913923G>A	ENST00000217246.4	+	11	1173	c.778G>A	c.(778-780)Gag>Aag	p.E260K	MACROD2_ENST00000310348.4_Missense_Mutation_p.E260K|MACROD2_ENST00000402914.1_Missense_Mutation_p.E25K|MACROD2_ENST00000378058.3_Missense_Mutation_p.E25K	NM_080676.5	NP_542407.2	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2	260	Glu-rich.									breast(2)|kidney(4)|large_intestine(5)|lung(8)|skin(1)	20		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				CTTGAAAGATGAGAACGGTCC	0.398000													14	101					0	0	1	0	0
SF3A3	10946	broad.mit.edu	37	1	38455594	38455594	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:38455594T>C	ENST00000373019.4	-	1	999	c.44A>G	c.(43-45)aAg>aGg	p.K15R	SF3A3_ENST00000448721.2_Missense_Mutation_p.K15R	NM_006802.2	NP_006793.1	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3, 60kDa	15					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding			breast(1)|endometrium(1)|kidney(3)|large_intestine(1)|liver(1)|lung(3)|prostate(2)	12	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GAGCCGTTCCTTCTCCTCATG	0.572000											OREG0013386	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	102	71					0	0	1	0	0
ADNP	23394	broad.mit.edu	37	20	49510900	49510900	+	Silent	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:49510900G>A	ENST00000396029.3	-	5	918	c.351C>T	c.(349-351)gaC>gaT	p.D117D	ADNP_ENST00000349014.3_Silent_p.D117D|ADNP_ENST00000371602.4_Silent_p.D117D|ADNP_ENST00000396032.3_Silent_p.D117D	NM_015339.2	NP_056154.1	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector homeobox	117						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(4)|endometrium(7)|kidney(1)|large_intestine(13)|lung(7)|ovary(2)|prostate(2)|skin(2)	39						AAGTCTTTTTGTCTGCATTGA	0.388000													15	254					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156821441	156821441	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:156821441C>T	ENST00000368195.3	-	4	1477	c.1081G>A	c.(1081-1083)Ggc>Agc	p.G361S	NTRK1_ENST00000392302.2_Intron	NM_014215.2	NP_055030.1	P14616	INSRR_HUMAN	insulin receptor-related receptor	361					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(8)|lung(13)|ovary(7)|prostate(3)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)	42	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TACTGACAGCCCTGGCGAAGG	0.567000													4	50					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15726039	15726039	+	Missense_Mutation	SNP	A	A	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr10:15726039A>T	ENST00000378076.3	-	4	885	c.532T>A	c.(532-534)Ttc>Atc	p.F178I		NM_003638.1	NP_003629.1	P53708	ITA8_HUMAN	integrin, alpha 8	178					cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			NS(2)|breast(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|lung(57)|ovary(3)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	96						TAGGCGCTGAAGTTCTGAATT	0.453000													22	33					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50953532	50953532	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr10:50953532C>T	ENST00000374103.4	-	12	1572	c.1487G>A	c.(1486-1488)cGc>cAc	p.R496H	OGDHL_ENST00000419399.1_Missense_Mutation_p.R439H|OGDHL_ENST00000432695.1_Missense_Mutation_p.R287H	NM_018245.2	NP_060715.2	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like	496					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			central_nervous_system(1)|cervix(1)|endometrium(6)|kidney(2)|large_intestine(14)|lung(30)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|soft_tissue(1)|upper_aerodigestive_tract(1)	61						GCCACGCCGGCGGTAACAGAC	0.577000													29	37					0	0	1	0	0
POLR2J	5439	broad.mit.edu	37	7	102114809	102114809	+	Missense_Mutation	SNP	C	C	A	rs143605325		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:102114809C>A	ENST00000393794.3	-	3	355	c.317G>T	c.(316-318)cGg>cTg	p.R106L	POLR2J_ENST00000292614.5_Splice_Site_p.R106_splice			P52435	RPB11_HUMAN	polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa	106					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|LRR domain binding|protein dimerization activity			pancreas(2)	2						CGCCCTCACCCGAAAGCGCTC	0.672000													31	281					1.39806e-14	1.64387e-14	1	1	0
ORC2	4999	broad.mit.edu	37	2	201798644	201798644	+	Silent	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr2:201798644G>T	ENST00000234296.2	-	10	1011	c.762C>A	c.(760-762)acC>acA	p.T254T		NM_006190.4	NP_006181.1	Q13416	ORC2_HUMAN	origin recognition complex, subunit 2	254					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding			breast(1)|endometrium(1)|large_intestine(2)|lung(10)|ovary(1)|skin(4)|upper_aerodigestive_tract(1)	20						TTCTATCAGAGGTTAAAACTT	0.343000													4	92					3.59834e-05	3.77473e-05	1	1	0
LINC01410	103352539	broad.mit.edu	37	9	66459863	66459863	+	RNA	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr9:66459863G>A	ENST00000424345.1	+	0	123																											tttcctggatggtgttgatgc	0.363000													3	17					0	0	1	0	0
CUL9	23113	broad.mit.edu	37	6	43182949	43182949	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:43182949C>T	ENST00000252050.4	+	30	5905	c.5821C>T	c.(5821-5823)Cgg>Tgg	p.R1941W	RP3-330M21.5_ENST00000500590.1_RNA|CUL9_ENST00000372647.2_Missense_Mutation_p.R1913W|CUL9_ENST00000354495.3_Missense_Mutation_p.R1831W	NM_015089.2	NP_055904.1	Q8IWT3	CUL9_HUMAN	cullin 9	1941					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(18)|liver(1)|lung(30)|ovary(5)|prostate(3)|skin(7)|upper_aerodigestive_tract(1)|urinary_tract(4)	92						CTACGTGAAACGGCGTGATGA	0.622000													61	216					0	0	1	0	0
GPX5	2880	broad.mit.edu	37	6	28500111	28500111	+	Missense_Mutation	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:28500111G>T	ENST00000412168.2	+	4	462	c.373G>T	c.(373-375)Ggg>Tgg	p.G125W	GPX5_ENST00000442674.2_3'UTR|GPX5_ENST00000469384.1_Missense_Mutation_p.Q85H	NM_001509.2	NP_001500.1	O75715	GPX5_HUMAN	glutathione peroxidase 5 (epididymal androgen-related protein)	125					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			endometrium(2)|large_intestine(4)|lung(7)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	16					Glutathione(DB00143)	TGTCCGTCCAGGGGGAGGATT	0.413000													24	199					2.48779e-11	2.8623e-11	1	1	0
DNAH2	146754	broad.mit.edu	37	17	7708594	7708594	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr17:7708594G>A	ENST00000572933.1	+	61	10785	c.9325G>A	c.(9325-9327)Gat>Aat	p.D3109N	DNAH2_ENST00000389173.2_Missense_Mutation_p.D3109N			Q9P225	DYH2_HUMAN	dynein, axonemal, heavy chain 2	3109	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(3)|breast(11)|central_nervous_system(1)|cervix(3)|endometrium(18)|haematopoietic_and_lymphoid_tissue(2)|kidney(16)|large_intestine(53)|liver(2)|lung(49)|ovary(7)|prostate(7)|skin(15)|upper_aerodigestive_tract(1)|urinary_tract(1)	189		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GAACAAGAAGGATATAGGAGA	0.532000													25	47					0	0	1	0	0
CLCN6	1185	broad.mit.edu	37	1	11897422	11897422	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:11897422T>C	ENST00000346436.6	+	20	2213	c.2161T>C	c.(2161-2163)Tac>Cac	p.Y721H	CLCN6_ENST00000376496.3_Missense_Mutation_p.Y721H|CLCN6_ENST00000376487.3_Missense_Mutation_p.Y699H|CLCN6_ENST00000312413.6_3'UTR	NM_001286.3	NP_001277.1	P51797	CLCN6_HUMAN	chloride channel, voltage-sensitive 6	721					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(7)|lung(12)|prostate(2)|skin(4)	36	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCAACCTATACCCTGACCA	0.592000													57	122					0	0	1	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138738782	138738782	+	Silent	SNP	A	A	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:138738782A>C	ENST00000242351.5	-	11	2563	c.2247T>G	c.(2245-2247)gcT>gcG	p.A749A	ZC3HAV1_ENST00000464606.1_Silent_p.A871A	NM_020119.3	NP_064504.2	Q7Z2W4	ZCCHV_HUMAN	zinc finger CCCH-type, antiviral 1	749	PARP catalytic.				response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			cervix(2)|endometrium(4)|kidney(3)|large_intestine(7)|lung(14)|ovary(2)|prostate(4)|skin(1)	37						TTTTCATGGAAGCTTTAAAAT	0.333000													37	66					0	0	1	0	0
TMEM53	79639	broad.mit.edu	37	1	45120842	45120842	+	Missense_Mutation	SNP	C	C	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:45120842C>G	ENST00000372237.3	-	3	386	c.223G>C	c.(223-225)Gtc>Ctc	p.V75L	TMEM53_ENST00000476724.1_5'UTR|TMEM53_ENST00000372235.3_Intron|TMEM53_ENST00000372243.3_Intron|TMEM53_ENST00000372244.3_Intron|TMEM53_ENST00000372242.3_Missense_Mutation_p.V75L	NM_024587.2	NP_078863.2	Q6P2H8	TMM53_HUMAN	transmembrane protein 53	75						integral to membrane				breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|liver(1)|lung(3)|ovary(2)|urinary_tract(1)	10	Acute lymphoblastic leukemia(166;0.155)					GAGAAGAAGACCATGTGCCAC	0.552000											OREG0013446	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	66					0	0	1	0	0
TBL3	10607	broad.mit.edu	37	16	2028390	2028390	+	Silent	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr16:2028390G>T	ENST00000568546.1	+	21	2339	c.2211G>T	c.(2209-2211)gtG>gtT	p.V737V		NM_006453.2	NP_006444.2	Q12788	TBL3_HUMAN	transducin (beta)-like 3	737					G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity			breast(1)|endometrium(2)|kidney(4)|lung(7)|ovary(1)|prostate(2)|skin(1)	18						TGCTGGGTGTGCTCTTGAGGC	0.677000													28	113					6.07407e-21	7.30254e-21	1	1	0
PLVAP	83483	broad.mit.edu	37	19	17476978	17476978	+	Silent	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:17476978G>A	ENST00000252590.4	-	2	457	c.396C>T	c.(394-396)taC>taT	p.Y132Y		NM_031310.1	NP_112600.1	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	132						caveola|integral to membrane|perinuclear region of cytoplasm				cervix(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(14)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	27						TGGCAGCCATGTACCTCTGAT	0.547000													14	183					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698929	17698929	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr2:17698929T>C	ENST00000399080.2	-	1	777	c.754A>G	c.(754-756)Aga>Gga	p.R252G		NM_001099218.2	NP_001092688.1	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	252										endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(10)|liver(1)|lung(17)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	49	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CCGCTATCTCTAAAATAGCTA	0.343000													14	64					0	0	1	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49340606	49340606	+	Silent	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:49340606G>A	ENST00000263265.6	-	20	2835	c.2280C>T	c.(2278-2280)gtC>gtT	p.V760V	PLEKHA4_ENST00000355496.5_3'UTR	NM_020904.2	NP_065955.2	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	760						cytoplasm|membrane	1-phosphatidylinositol binding			NS(1)|breast(5)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|prostate(3)|skin(2)|urinary_tract(2)	30		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		CTTGTGGCAGGACCGGAGGGG	0.667000													17	63					0	0	1	0	0
ST6GALNAC2	10610	broad.mit.edu	37	17	74569286	74569286	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr17:74569286T>C	ENST00000225276.5	-	4	840	c.521A>G	c.(520-522)tAt>tGt	p.Y174C	ST6GALNAC2_ENST00000586520.1_5'UTR	NM_006456.2	NP_006447.2	Q9UJ37	SIA7B_HUMAN	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	174					protein glycosylation	integral to Golgi membrane	sialyltransferase activity			NS(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	11						CCTGAATACATAGTCATGGGC	0.637000													6	40					0	0	1	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21350059	21350059	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr12:21350059G>A	ENST00000256958.2	+	8	1003	c.907G>A	c.(907-909)Gat>Aat	p.D303N		NM_006446.4	NP_006437.3	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family, member 1B1	303					bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(14)|lung(33)|ovary(3)|pancreas(1)|prostate(1)|skin(8)|upper_aerodigestive_tract(1)	70					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	GGAAACAAATGATGAAAAGGA	0.323000													25	55					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239040199	239040199	+	Silent	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr2:239040199C>T	ENST00000343063.3	+	9	3107	c.2844C>T	c.(2842-2844)ctC>ctT	p.L948L	ESPNL_ENST00000409506.1_Silent_p.L580L|ESPNL_ENST00000409169.1_Silent_p.L904L|ESPNL_ENST00000477241.1_3'UTR	NM_194312.2	NP_919288.2	Q6ZVH7	ESPNL_HUMAN	espin-like	948										endometrium(1)|lung(8)|pancreas(2)|skin(2)	13		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		TGACCCTGCTCGGGCCCCTGC	0.697000													11	16					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131311	52131311	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:52131311G>A	ENST00000222107.4	-	5	911	c.773C>T	c.(772-774)cCg>cTg	p.P258L	SIGLEC5_ENST00000599649.1_Missense_Mutation_p.P258L|SIGLEC5_ENST00000429354.3_Missense_Mutation_p.P258L|SIGLEC5_ENST00000534261.2_Missense_Mutation_p.P258L|SIGLEC5_ENST00000570106.2_Missense_Mutation_p.P258L			O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5	258	Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding	p.P258L(1)		NS(1)|breast(1)|central_nervous_system(2)|endometrium(3)|large_intestine(4)|lung(9)|prostate(2)|skin(4)|upper_aerodigestive_tract(1)	27		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CTCCAGGACCGGAAGGTATGA	0.627000													27	67					0	0	1	0	0
LMBR1L	55716	broad.mit.edu	37	12	49504278	49504278	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr12:49504278G>A	ENST00000267102.8	-	1	403	c.61C>T	c.(61-63)Cgc>Tgc	p.R21C	LMBR1L_ENST00000553204.1_5'UTR|LMBR1L_ENST00000547382.1_Missense_Mutation_p.R21C	NM_018113.2	NP_060583.2	Q6UX01	LMBRL_HUMAN	limb development membrane protein 1-like	21	LCN1-binding.				endocytosis	integral to membrane|plasma membrane	receptor activity			endometrium(2)|kidney(2)|large_intestine(1)|lung(5)|pancreas(1)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	15						ATACACTCGCGGATCCTCTCG	0.627000													4	148					0	0	1	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21940511	21940511	+	Silent	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:21940511G>A	ENST00000542643.2	-	9	665	c.363C>T	c.(361-363)atC>atT	p.I121I	RAP1GAP_ENST00000374763.2_Silent_p.I121I|RAP1GAP_ENST00000374765.4_Silent_p.I121I|RAP1GAP_ENST00000374761.2_Silent_p.I152I|RAP1GAP_ENST00000290101.4_Silent_p.I185I|RAP1GAP_ENST00000374757.3_5'UTR	NM_001145657.1	NP_001139129.1	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein	121					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|central_nervous_system(1)|endometrium(1)|large_intestine(3)|lung(7)|ovary(2)|skin(1)	17		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		CTTGGTCCCCGATGACATCGT	0.592000													11	18					0	0	1	0	0
CEP97	79598	broad.mit.edu	37	3	101476781	101476781	+	Missense_Mutation	SNP	A	A	G			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr3:101476781A>G	ENST00000341893.3	+	9	2083	c.1331A>G	c.(1330-1332)gAa>gGa	p.E444G	CEP97_ENST00000327230.4_Missense_Mutation_p.E444G|CEP97_ENST00000494050.1_Missense_Mutation_p.E385G			Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	444	CEP110 binding.					centrosome|nucleus	protein binding			cervix(1)|endometrium(2)|kidney(4)|large_intestine(4)|lung(13)|ovary(2)|prostate(1)|skin(1)|urinary_tract(1)	29						AAAGGGCTGGAAAGCCAGGTG	0.453000													24	30					0	0	1	0	0
GRSF1	2926	broad.mit.edu	37	4	71691020	71691020	+	Silent	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr4:71691020G>A	ENST00000254799.6	-	8	1503	c.1386C>T	c.(1384-1386)tcC>tcT	p.S462S	GRSF1_ENST00000439371.1_Silent_p.S300S|GRSF1_ENST00000545193.1_Silent_p.S344S|GRSF1_ENST00000508091.1_Intron|GRSF1_ENST00000502323.1_Silent_p.S300S	NM_002092.3	NP_002083.3	Q12849	GRSF1_HUMAN	G-rich RNA sequence binding factor 1	462	RRM 3.				mRNA polyadenylation		mRNA binding|nucleotide binding			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(9)|upper_aerodigestive_tract(2)	17		all_hematologic(202;0.21)	Lung(101;0.235)			TACGAACGTGGGACCGATCCT	0.448000													4	38					0	0	1	0	0
DUSP10	11221	broad.mit.edu	37	1	221912497	221912497	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:221912497G>A	ENST00000366899.3	-	2	828	c.590C>T	c.(589-591)gCc>gTc	p.A197V	DUSP10_ENST00000323825.3_Intron	NM_007207.4	NP_009138.1	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10	197	Rhodanese.				inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			NS(1)|endometrium(6)|kidney(1)|large_intestine(6)|lung(16)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	36				GBM - Glioblastoma multiforme(131;0.0103)		GATCTTATCGGCACAGTTAAT	0.517000													4	118					0	0	1	0	0
ZDHHC14	79683	broad.mit.edu	37	6	158093953	158093953	+	Silent	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:158093953G>A	ENST00000359775.5	+	9	2155	c.1266G>A	c.(1264-1266)acG>acA	p.T422T	ZDHHC14_ENST00000341375.8_3'UTR|ZDHHC14_ENST00000414563.2_Silent_p.T407T			Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14	422						integral to membrane	acyltransferase activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(4)|lung(8)|ovary(1)|skin(1)	17		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		CCGAGGCCACGCTCGCGGACG	0.736000													5	11					0	0	1	0	0
ZNF679	168417	broad.mit.edu	37	7	63727222	63727222	+	Missense_Mutation	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:63727222G>T	ENST00000421025.1	+	5	1480	c.1211G>T	c.(1210-1212)gGa>gTa	p.G404V	ZNF679_ENST00000255746.4_Missense_Mutation_p.G404V	NM_001159524.1|NM_153363.2	NP_001152996.1|NP_699194.2	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	404					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(2)|kidney(3)|lung(11)|skin(1)|stomach(1)	18						ATGCATACTGGAGAGAAACCC	0.338000													3	25					6.4e-05	6.64854e-05	1	1	0
EID3	493861	broad.mit.edu	37	12	104698185	104698185	+	Missense_Mutation	SNP	C	C	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr12:104698185C>T	ENST00000527879.1	+	1	669	c.473C>T	c.(472-474)gCa>gTa	p.A158V	TXNRD1_ENST00000542918.1_Intron|TXNRD1_ENST00000540716.1_Intron|TXNRD1_ENST00000529546.1_Intron|TXNRD1_ENST00000526691.1_Intron|TXNRD1_ENST00000526390.1_Intron|TXNRD1_ENST00000525566.1_Intron|TXNRD1_ENST00000524698.1_Intron|TXNRD1_ENST00000503506.2_Intron|TXNRD1_ENST00000429002.2_Intron|TXNRD1_ENST00000397736.2_Intron|TXNRD1_ENST00000388854.3_Intron|TXNRD1_ENST00000378070.4_Intron|TXNRD1_ENST00000354940.6_Intron	NM_001008394.2	NP_001008395.1	Q8N140	EID3_HUMAN	EP300 interacting inhibitor of differentiation 3	158					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				large_intestine(5)|lung(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	10						GAAAAGGAAGCAACATCCTGG	0.433000													66	156					0	0	1	0	0
OCA2	4948	broad.mit.edu	37	15	28261293	28261293	+	Missense_Mutation	SNP	T	T	C			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr15:28261293T>C	ENST00000354638.3	-	8	1002	c.847A>G	c.(847-849)Agc>Ggc	p.S283G	OCA2_ENST00000382996.2_Missense_Mutation_p.S283G|OCA2_ENST00000353809.5_Missense_Mutation_p.S283G	NM_000275.2	NP_000266.2	Q04671	P_HUMAN	oculocutaneous albinism II	283					eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(7)|kidney(3)|large_intestine(11)|lung(48)|ovary(4)|pancreas(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	85		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GAGTGCTCGCTTCTCCTCGGA	0.502000									Oculocutaneous Albinism				41	72					0	0	1	0	0
TRBV11-1	28582	broad.mit.edu	37	7	142224278	142224278	+	RNA	SNP	G	G	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:142224278G>T	ENST00000390367.3	-	0	6																											GGCAGGGTCAGGGCAGGATGG	0.542000													13	75					1.49906e-05	1.58811e-05	1	1	0
LINC01410	103352539	broad.mit.edu	37	9	66459862	66459862	+	RNA	SNP	T	T	C	rs142101130	by1000genomes	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr9:66459862T>C	ENST00000424345.1	+	0	122																											ttttcctggatggtgttgatg	0.363000													4	17					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16910916	16910916	+	Missense_Mutation	SNP	G	G	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:16910916G>A	ENST00000524140.2	+	17	4097	c.3679G>A	c.(3679-3681)Gtc>Atc	p.V1227I	NWD1_ENST00000552788.1_Missense_Mutation_p.V1227I|NWD1_ENST00000549814.1_Missense_Mutation_p.V1185I|NWD1_ENST00000523826.1_Missense_Mutation_p.V1021I|NWD1_ENST00000379808.3_Missense_Mutation_p.V1227I|NWD1_ENST00000339803.6_Missense_Mutation_p.V1092I	NM_001007525.3	NP_001007526.3	Q149M9	NWD1_HUMAN	NACHT and WD repeat domain containing 1	1227							ATP binding			NS(3)|breast(2)|cervix(1)|endometrium(8)|large_intestine(17)|lung(18)|ovary(2)|pancreas(3)|prostate(5)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	67						TGGAAGCTACGTCTACTTCCC	0.502000													33	51					0	0	1	0	0
AP006222.2	0	broad.mit.edu	37	1	255909	255910	+	RNA	INS	-	-	TG			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:255909_255910insTG	ENST00000424587.2	-	0	263																											gtgtgtgtgtatgtgtgtgtgt	0.361													3	3	---	---	---	---					
LINC01128	643837	broad.mit.edu	37	1	790342	790342	+	RNA	DEL	C	C	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:790342delC	ENST00000445118.2	+	0	2122					NR_047519.1|NR_047520.1|NR_047521.1|NR_047522.1|NR_047523.1|NR_047524.1|NR_047525.1																						GGCCATGGAGCACCCAGCAAG	0.597													2	4	---	---	---	---					
RP11-70P17.1	0	broad.mit.edu	37	1	25912981	25912982	+	RNA	DEL	GT	GT	-	rs66843792		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:25912981_25912982delGT	ENST00000412797.1	+	0	295																											gtgcgtgtgcgtgtgtgtgtgt	0.574													2	4	---	---	---	---					
RP5-936J12.1	0	broad.mit.edu	37	1	103272651	103272652	+	RNA	INS	-	-	T			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:103272651_103272652insT	ENST00000414418.1	-	0	251																											caacttcttcctgttttagtct	0.347													2	4	---	---	---	---					
RP11-373J16.1	0	broad.mit.edu	37	1	188974189	188974190	+	RNA	DEL	AA	AA	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:188974189_188974190delAA	ENST00000445072.1	+	0	239																											CAGTGCTCCTAAAAATTATTGT	0.267													2	4	---	---	---	---					
LINC01031	101929184	broad.mit.edu	37	1	193299749	193299750	+	RNA	INS	-	-	A	rs144219610		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:193299749_193299750insA	ENST00000420807.1	+	0	194																											ttctcaaaaagaaaaaaaaaaa	0.361													2	4	---	---	---	---					
PCNXL2	80003	broad.mit.edu	37	1	233296129	233296130	+	Frame_Shift_Ins	INS	-	-	A			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr1:233296129_233296130insA	ENST00000258229.8	-	19	3650_3651	c.3416_3417insT	c.(3415-3417)gacfs	p.D1139fs	PCNXL2_ENST00000488780.2_Frame_Shift_Ins_p.D272fs|PCNXL2_ENST00000520463.1_5'UTR	NM_014801.3	NP_055616.3	A6NKB5	PCX2_HUMAN	pecanex-like 2 (Drosophila)	1139						integral to membrane				NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(16)|kidney(7)|large_intestine(19)|lung(30)|pancreas(1)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	86		all_cancers(173;0.0347)|Prostate(94;0.137)				CGTAATGTGTTACAAACCCCAC	0.490													20	68	---	---	---	---					
LOC101927533	101927533	broad.mit.edu	37	2	65807281	65807281	+	RNA	DEL	C	C	-	rs36124729		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr2:65807281delC	ENST00000377977.3	+	0	862																											tcctccttctccccctccatc	0.557													4	3	---	---	---	---					
CTBP1-AS2	92070	broad.mit.edu	37	4	1276979	1276980	+	RNA	INS	-	-	TGG			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr4:1276979_1276980insTGG	ENST00000578730.1	+	0	2372																											AACCGTGGGAATGGGTGGGCGT	0.515													3	3	---	---	---	---					
RP11-549K20.1	0	broad.mit.edu	37	5	25137790	25137797	+	RNA	DEL	AAAACAAA	AAAACAAA	-	rs10599450		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:25137790_25137797delAAAACAAA	ENST00000507600.1	-	0	280																											aaaacaaaacaaaacaaaaaaacaaaaA	0.337													3	3	---	---	---	---					
HMGB3P22	729595	broad.mit.edu	37	5	179121452	179121452	+	RNA	DEL	T	T	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr5:179121452delT	ENST00000442010.2	+	0	399																											AGAAGGATCCTAGTGCCCCCA	0.473													11	39	---	---	---	---					
HLA-DRB6	3128	broad.mit.edu	37	6	32524875	32524876	+	RNA	INS	-	-	AA	rs112981870	by1000genomes	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr6:32524875_32524876insAA	ENST00000411500.1	-	0	458					NR_001298.1																						AATTACAAATCaaaaatataaa	0.277													2	4	---	---	---	---					
AC073316.1	0	broad.mit.edu	37	7	3337336	3337338	+	RNA	DEL	GAG	GAG	-	rs71881628		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:3337336_3337338delGAG	ENST00000437354.1	-	0	224																											agtggaagaagaggaggaggagg	0.448													9	5	---	---	---	---					
AC004540.5	0	broad.mit.edu	37	7	26485559	26485559	+	RNA	DEL	A	A	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:26485559delA	ENST00000418758.2	+	0	468																											gtttcaaaagaaaaaaaaaaa	0.458													3	3	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100387899	100387899	+	RNA	DEL	T	T	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:100387899delT	ENST00000542585.1	+	0	7502				ZAN_ENST00000538115.1_RNA|ZAN_ENST00000348028.3_RNA|ZAN_ENST00000449052.1_RNA|ZAN_ENST00000427578.1_RNA|ZAN_ENST00000349350.6_RNA|ZAN_ENST00000546292.1_RNA|ZAN_ENST00000546213.1_RNA|ZAN_ENST00000421100.1_RNA|ZAN_ENST00000443370.1_RNA	NM_003386.1	NP_003377.1	Q9Y493	ZAN_HUMAN	zonadhesin (gene/pseudogene)						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			aaaaaGTTAATTAAggctggg	0.537													2	4	---	---	---	---					
RP11-395B7.2	0	broad.mit.edu	37	7	100611204	100611204	+	RNA	DEL	C	C	-	rs142957258		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:100611204delC	ENST00000420080.1	-	0	85																											TGTATCTTCTCCCCTTCTGAG	0.577													3	4	---	---	---	---					
LOC101928254	101928254	broad.mit.edu	37	7	124896141	124896141	+	RNA	DEL	T	T	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr7:124896141delT	ENST00000420224.1	-	0	249				RP11-3B12.2_ENST00000424515.2_RNA																							AACATGATTCTTTACAGGGCT	0.393													2	4	---	---	---	---					
LINC01410	103352539	broad.mit.edu	37	9	66466800	66466800	+	RNA	DEL	G	G	-	rs139943429	by1000genomes	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr9:66466800delG	ENST00000424345.1	+	0	1433																											CCTCATCAGAGGACCCCAGAT	0.522													2	4	---	---	---	---					
LINC01410	103352539	broad.mit.edu	37	9	66468616	66468616	+	RNA	DEL	G	G	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr9:66468616delG	ENST00000424345.1	+	0	2183																											CACTACAAAAgttctcttttg	0.348													2	4	---	---	---	---					
LOC100996643	100996643	broad.mit.edu	37	9	67295161	67295161	+	RNA	DEL	T	T	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr9:67295161delT	ENST00000432011.2	+	0	501																											tgtttcttggttttttttttt	0.378													4	2	---	---	---	---					
RP11-764K9.1	0	broad.mit.edu	37	9	68398047	68398047	+	RNA	DEL	G	G	-	rs80228104		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr9:68398047delG	ENST00000417843.2	-	0	2708																											TTTTTCTAGAGTTTTTTTTTA	0.368													2	4	---	---	---	---					
RP11-491H19.1	0	broad.mit.edu	37	10	63548672	63548672	+	RNA	DEL	C	C	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr10:63548672delC	ENST00000441001.2	-	0	237																											cgcctgtagtccctgcttctt	0.537													2	4	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	78793452	78793452	+	RNA	DEL	A	A	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr13:78793452delA	ENST00000607862.1	+	0	230				RNF219-AS1_ENST00000605996.1_RNA|RNF219-AS1_ENST00000560209.2_RNA|RNF219-AS1_ENST00000607860.1_RNA|RNF219-AS1_ENST00000607205.1_RNA|RNF219-AS1_ENST00000430549.2_RNA|RNF219-AS1_ENST00000607220.1_RNA|RNF219-AS1_ENST00000606803.1_RNA|RNF219-AS1_ENST00000606376.1_RNA|RNF219-AS1_ENST00000606429.1_RNA|RNF219-AS1_ENST00000606124.1_RNA|RNF219-AS1_ENST00000606187.1_RNA|RNF219-AS1_ENST00000444769.3_RNA																							TGTTGTCCCCAAAAGGAACCA	0.413													2	4	---	---	---	---					
RP11-597A11.1	0	broad.mit.edu	37	14	20145717	20145717	+	RNA	DEL	A	A	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr14:20145717delA	ENST00000548261.1	+	0	391																											AAAACCTTTGAAAATAATTCT	0.294													2	4	---	---	---	---					
LINC00924	145820	broad.mit.edu	37	15	96004941	96004943	+	RNA	DEL	AGG	AGG	-	rs112955459		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr15:96004941_96004943delAGG	ENST00000556053.1	+	0	337					NR_027132.1																						aaagaaagaaaggaggaaaggat	0.330													3	3	---	---	---	---					
NUFIP2	57532	broad.mit.edu	37	17	27620932	27620934	+	In_Frame_Del	DEL	TGG	TGG	-	rs1054145	byFrequency	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr17:27620932_27620934delTGG	ENST00000225388.4	-	1	202_204	c.144_146delCCA	c.(142-147)cat>ca	p.HH50del	NUFIP2_ENST00000579665.1_In_Frame_Del_p.HH50del	NM_020772.2	NP_065823.1	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein interacting protein 2	50	His-rich.					nucleus|polysomal ribosome	protein binding|RNA binding			breast(1)|endometrium(3)|kidney(1)|large_intestine(3)|liver(1)|lung(7)|ovary(1)|prostate(2)|skin(4)|urinary_tract(1)	24			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			Ctggtgatgatggtggtggtggt	0.591													7	222	---	---	---	---					
LINC01478	101927921	broad.mit.edu	37	18	41996291	41996291	+	RNA	DEL	T	T	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr18:41996291delT	ENST00000587877.1	-	0	386																											gctgcaggagttttttttcca	0.532													2	4	---	---	---	---					
SPPL2B	56928	broad.mit.edu	37	19	2348742	2348743	+	RNA	DEL	TC	TC	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:2348742_2348743delTC	ENST00000452401.2	+	0	1431				AC005258.3_ENST00000590001.1_RNA			Q8TCT7	PSL1_HUMAN	signal peptide peptidase like 2B							Golgi membrane|integral to membrane	aspartic-type endopeptidase activity						Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGATTCCGTTCTCTCTCTCCA	0.515													2	4	---	---	---	---					
EML2	24139	broad.mit.edu	37	19	46148621	46148621	+	Frame_Shift_Del	DEL	C	C	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr19:46148621delC	ENST00000587152.1	-	1	266	c.82delG	c.(82-84)ccfs	p.A28fs		NM_001193268.1	NP_001180197.1	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like 2	0					sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			NS(1)|breast(2)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(8)|lung(13)|ovary(1)|urinary_tract(1)	31		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		CCACCGCCGGCCCCCCCGGTC	0.726													3	3	---	---	---	---					
LOC101926955	101926955	broad.mit.edu	37	20	25938788	25938789	+	RNA	INS	-	-	A	rs138143120	by1000genomes	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:25938788_25938789insA	ENST00000449316.1	+	0	183																											catctcaaaggaaaaaaaaaaG	0.505													5	6	---	---	---	---					
RP4-610C12.1	0	broad.mit.edu	37	20	29588566	29588566	+	RNA	DEL	A	A	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:29588566delA	ENST00000432067.1	-	0	152																											tttgtattttattgagaattt	0.323													4	7	---	---	---	---					
RP4-610C12.1	0	broad.mit.edu	37	20	29590215	29590216	+	RNA	INS	-	-	T	rs142088020		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:29590215_29590216insT	ENST00000432067.1	-	0	152																											tgtcttcttagtttggttattt	0.282													2	4	---	---	---	---					
BPI	671	broad.mit.edu	37	20	36923038	36923039	+	RNA	INS	-	-	ACA	rs143429948	by1000genomes	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:36923038_36923039insACA	ENST00000437016.1	-	0	183																											aaacgacgacgacaacaacaac	0.480													3	3	---	---	---	---					
MIR646HG	284757	broad.mit.edu	37	20	58786210	58786211	+	RNA	INS	-	-	GT	rs143114207	by1000genomes	TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr20:58786210_58786211insGT	ENST00000432910.1	+	0	332					NR_046099.1																						TCCAGGGATGGGTGTGTGTGTG	0.564											OREG0026095	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	5	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11057731	11057731	+	RNA	DEL	G	G	-			TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr21:11057731delG	ENST00000470054.1	-	0	487									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGTGTTTGGTGTTCCTATTAA	0.353													3	3	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11079710	11079711	+	RNA	INS	-	-	TA	rs74711197		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr21:11079710_11079711insTA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		aatttttttttaaaGCAAATTC	0.406													5	7	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11086246	11086248	+	RNA	DEL	ATA	ATA	-	rs112021058		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr21:11086246_11086248delATA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		agtattccagataataaaatgaa	0.345													3	3	---	---	---	---					
AP003900.6	0	broad.mit.edu	37	21	11175282	11175283	+	RNA	INS	-	-	G	rs56073885		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chr21:11175282_11175283insG	ENST00000603265.1	+	0	231																											GATCATCTGTAGTGTACGGTGG	0.391													4	2	---	---	---	---					
NXF4	55999	broad.mit.edu	37	X	101819105	101819106	+	RNA	DEL	CT	CT	-	rs72343127		TCGA-GN-A4U9-06A-11D-A32N-08	TCGA-GN-A4U9-10B-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	883176d6-d599-403e-a05c-005087e90164	fa43af58-6064-4cf1-afcb-8476faa63b71	g.chrX:101819105_101819106delCT	ENST00000360035.2	+	0	1258					NR_002216.1															endometrium(2)|lung(8)	10						TCccctcctactctctctctct	0.559													2	4	---	---	---	---					
