Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RGPD3	653489	broad.mit.edu	37	2	107049631	107049631	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr2:107049631C>T	ENST00000409886.3	-	16	2403	c.2316G>A	c.(2314-2316)gcG>gcA	p.A772A	RGPD3_ENST00000304514.7_Silent_p.A772A	NM_001144013.1	NP_001137485.1	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	772					intracellular transport		binding	p.A772A(4)		breast(2)|central_nervous_system(1)|endometrium(50)|kidney(4)|lung(11)|ovary(1)|urinary_tract(2)	71						TTTCTGAATCCGCATTTCGCA	0.373000													4	208					0	0	1	0	0
IQCJ-SCHIP1	0	broad.mit.edu	37	3	159614540	159614540	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr3:159614540G>A	ENST00000337808.6	+	8	2018	c.1441G>A	c.(1441-1443)Gca>Aca	p.A481T	IQCJ-SCHIP1_ENST00000476809.1_Missense_Mutation_p.A530T|SCHIP1_ENST00000482804.1_Missense_Mutation_p.A254T|IQCJ-SCHIP1_ENST00000412423.2_Missense_Mutation_p.A468T|IQCJ-SCHIP1_ENST00000485419.1_Missense_Mutation_p.A557T|IQCJ-SCHIP1_ENST00000527095.1_Missense_Mutation_p.A249T|SCHIP1_ENST00000445224.2_Missense_Mutation_p.A238T	NM_001197107.1|NM_014575.3	NP_001184036.1|NP_055390.1	Q9P0W5	SCHI1_HUMAN		481			A -> V (in dbSNP:rs17850021).			cytoplasm	identical protein binding|protein binding			central_nervous_system(1)|cervix(1)|endometrium(1)|large_intestine(2)|lung(7)	12						GAAGCACATGGCAGAGAAAAT	0.363000													3	18					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53045843	53045843	+	Silent	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr8:53045843G>A	ENST00000276480.7	-	20	3002	c.2319C>T	c.(2317-2319)tgC>tgT	p.C773C		NM_014682.2	NP_055497.1	O60284	ST18_HUMAN	suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)	773						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(2)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(14)|lung(38)|ovary(4)|prostate(2)|skin(11)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	85		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CCGAGCCATCGCAGCCTGGGG	0.522000													12	29					0	0	1	0	0
AC024560.3	0	broad.mit.edu	37	3	197348668	197348668	+	RNA	SNP	C	C	G	rs79940815	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr3:197348668C>G	ENST00000418868.1	-	0	591					NR_003266.2																						ACTTGAGGCTCTGTCCACCAA	0.488000													4	100					0	0	1	0	0
DDN	23109	broad.mit.edu	37	12	49392347	49392347	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:49392347C>T	ENST00000421952.2	-	2	333	c.312G>A	c.(310-312)gaG>gaA	p.E104E	RP11-386G11.5_ENST00000552933.1_RNA|RP11-386G11.5_ENST00000547395.1_RNA|RP11-386G11.5_ENST00000547866.1_RNA|RP11-386G11.5_ENST00000552284.1_RNA	NM_015086.1	NP_055901.2	O94850	DEND_HUMAN	dendrin	104						dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				NS(1)|kidney(1)|large_intestine(1)|lung(3)|prostate(1)|stomach(1)	8						GAGCTCGGACCTCGGCCAGGG	0.741000													12	18					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628278	29628278	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr20:29628278G>A	ENST00000278882.3	+	6	660	c.280G>A	c.(280-282)Gca>Aca	p.A94T	FRG1B_ENST00000358464.4_Missense_Mutation_p.A94T|FRG1B_ENST00000439954.2_Missense_Mutation_p.A99T																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGCAATGAAGCAGGGGACAT	0.373000													4	114					0	0	1	0	0
HLA-DQB2	3120	broad.mit.edu	37	6	32725596	32725596	+	Silent	SNP	C	C	G	rs115565146	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr6:32725596C>G	ENST00000435145.2	-	4	772	c.711G>C	c.(709-711)ctG>ctC	p.L237L	HLA-DQB2_ENST00000437316.2_Silent_p.L237L|HLA-DQB2_ENST00000411527.1_Intron			Q5SR06	Q5SR06_HUMAN	major histocompatibility complex, class II, DQ beta 2	216					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|immune response	integral to membrane|MHC class II protein complex				endometrium(1)|kidney(1)|lung(1)|prostate(2)	5						CGAGGAAGATCAGCCCCAGCA	0.562000													3	13					0	0	1	0	0
BMP2K	55589	broad.mit.edu	37	4	79792085	79792085	+	Missense_Mutation	SNP	G	G	C	rs71828885		TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr4:79792085G>C	ENST00000335016.5	+	11	1546	c.1380G>C	c.(1378-1380)caG>caC	p.Q460H	BMP2K_ENST00000502871.1_Missense_Mutation_p.Q460H	NM_198892.1	NP_942595.1	Q9NSY1	BMP2K_HUMAN	BMP2 inducible kinase	460	Gln/His-rich.					nucleus	ATP binding|protein serine/threonine kinase activity	p.Q460H(3)		NS(1)|breast(1)|endometrium(4)|large_intestine(2)|lung(3)|prostate(1)|urinary_tract(1)	13						ATCCTCACcagcagcagcagc	0.577000													4	55					0	0	1	0	0
STAT5A	6776	broad.mit.edu	37	17	40447745	40447745	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr17:40447745C>T	ENST00000345506.4	+	6	1126	c.484C>T	c.(484-486)Ctg>Ttg	p.L162L	STAT5A_ENST00000546010.2_Silent_p.L132L|STAT5A_ENST00000452307.2_Silent_p.L162L|STAT5A_ENST00000590949.1_Silent_p.L162L|STAT5A_ENST00000588868.1_Silent_p.L162L	NM_003152.3	NP_003143.2	P42229	STA5A_HUMAN	signal transducer and activator of transcription 5A	162					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|oxaloacetate metabolic process|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|kidney(2)|large_intestine(1)|lung(8)|ovary(1)|upper_aerodigestive_tract(1)	14		all_cancers(22;1.56e-06)|all_epithelial(22;3.17e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		AGAGAATGAGCTGAAGAAACT	0.567000													6	14					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	rs146714035	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:145367739A>G	ENST00000342960.5	+	83	10370	c.10335A>G	c.(10333-10335)aaA>aaG	p.K3445K	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	3445								p.K3445K(4)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.413000													4	71					0	0	1	0	0
SCAF11	9169	broad.mit.edu	37	12	46321348	46321348	+	Silent	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:46321348G>A	ENST00000465950.1	-	1	2400	c.1191C>T	c.(1189-1191)gaC>gaT	p.D397D	SCAF11_ENST00000419565.2_Silent_p.D712D|SCAF11_ENST00000549162.1_Silent_p.D520D|SCAF11_ENST00000369367.3_Silent_p.D712D			Q99590	SCAFB_HUMAN	SR-related CTD-associated factor 11	712					spliceosome assembly	nucleus	protein binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(8)|large_intestine(17)|lung(25)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(3)	69						TTTCATTGTTGTCCTCACTAA	0.353000													11	147					0	0	1	0	0
MEN1	0	broad.mit.edu	37	11	64575521	64575521	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr11:64575521G>A	ENST00000337652.1	-	3	1014	c.511C>T	c.(511-513)Cag>Tag	p.Q171*	MEN1_ENST00000394376.1_Nonsense_Mutation_p.Q171*|MEN1_ENST00000377321.1_Nonsense_Mutation_p.Q166*|MEN1_ENST00000377313.1_Nonsense_Mutation_p.Q171*|MEN1_ENST00000377326.3_Nonsense_Mutation_p.Q166*|MEN1_ENST00000394374.2_Nonsense_Mutation_p.Q171*|MEN1_ENST00000312049.6_Nonsense_Mutation_p.Q166*|MEN1_ENST00000443283.1_Nonsense_Mutation_p.Q171*|MEN1_ENST00000377316.2_Nonsense_Mutation_p.Q166*|MEN1_ENST00000315422.4_Nonsense_Mutation_p.Q166*	NM_130803.2	NP_570715.1	O00255	MEN1_HUMAN	multiple endocrine neoplasia I	171			Missing (in MEN1).		DNA repair|histone lysine methylation|MAPKKK cascade|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of JNK cascade|negative regulation of osteoblast differentiation|negative regulation of protein phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of telomerase activity|negative regulation of transcription from RNA polymerase II promoter|osteoblast development|positive regulation of protein binding|positive regulation of transforming growth factor beta receptor signaling pathway|response to gamma radiation|response to UV|transcription, DNA-dependent	chromatin|cleavage furrow|cytosol|histone methyltransferase complex|nuclear matrix|soluble fraction	double-stranded DNA binding|four-way junction DNA binding|protein binding, bridging|protein N-terminus binding|R-SMAD binding|transcription regulatory region DNA binding|Y-form DNA binding			NS(7)|adrenal_gland(5)|breast(2)|central_nervous_system(5)|endometrium(1)|gastrointestinal_tract_(site_indeterminate)(15)|large_intestine(2)|lung(21)|ovary(1)|pancreas(64)|parathyroid(181)|pituitary(7)|prostate(4)|retroperitoneum(1)|skin(1)|small_intestine(13)|soft_tissue(4)|stomach(1)|thymus(2)	337						CCCAGGGCCTGGCAGGCCCCA	0.602000			"""D, Mis, N, F, S"""		"""parathyroid tumors, Pancreatic neuroendocrine tumors"""	"""parathyroid adenoma, pituitary adenoma, pancreatic islet cell, carcinoid"""			Multiple Endocrine Neoplasia, type 1;Hyperparathyroidism, Familial Isolated				7	10					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24886268	24886268	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr14:24886268C>T	ENST00000382554.3	+	9	5631	c.5313C>T	c.(5311-5313)ccC>ccT	p.P1771P		NM_025081.2	NP_079357.2	Q9P2P1	NYNRI_HUMAN	NYN domain and retroviral integrase containing	1771	Integrase catalytic.				DNA integration	integral to membrane	DNA binding			breast(3)|central_nervous_system(1)|endometrium(7)|kidney(6)|large_intestine(8)|lung(21)|ovary(2)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	56						TCACGGAGCCCCTGTGGTGGG	0.632000													18	35					0	0	1	0	0
CPSF3L	54973	broad.mit.edu	37	1	1247284	1247284	+	Silent	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:1247284G>A	ENST00000540437.1	-	19	2231	c.1776C>T	c.(1774-1776)ttC>ttT	p.F592F	CPSF3L_ENST00000545578.1_Silent_p.F557F|CPSF3L_ENST00000421495.2_Silent_p.F328F|CPSF3L_ENST00000462432.1_5'UTR|CPSF3L_ENST00000411962.1_Silent_p.F488F|CPSF3L_ENST00000450926.2_Silent_p.F564F|CPSF3L_ENST00000435064.1_Silent_p.F586F|CPSF3L_ENST00000419704.1_Silent_p.F485F	NM_001256456.1	NP_001243385.1	Q5TA45	INT11_HUMAN	cleavage and polyadenylation specific factor 3-like	586						Golgi apparatus|nucleus	hydrolase activity			endometrium(4)|kidney(2)|lung(3)|prostate(1)|upper_aerodigestive_tract(3)	13	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(86;4.35e-21)|Colorectal(212;0.000166)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.00235)|BRCA - Breast invasive adenocarcinoma(365;0.00255)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0349)|Lung(427;0.201)		GAGATGTGAGGAAGCTCCCCA	0.642000													7	30					0	0	1	0	0
NBPF15	284565	broad.mit.edu	37	1	148594439	148594439	+	Silent	SNP	A	A	G	rs146739148	byFrequency	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:148594439A>G	ENST00000442702.2	+	21	2879	c.1812A>G	c.(1810-1812)ttA>ttG	p.L604L	NBPF15_ENST00000369187.3_Silent_p.L604L	NM_001170755.1	NP_001164226.1	Q8N660	NBPFF_HUMAN	neuroblastoma breakpoint family, member 15	604	NBPF 6.					cytoplasm				NS(1)|cervix(1)|endometrium(1)|large_intestine(4)|lung(3)|skin(2)	12	all_hematologic(923;0.032)					CTGAAGTCTTACAGGACTCAC	0.463000													5	172					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40745381	40745381	+	Missense_Mutation	SNP	C	C	T	rs111691891		TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:40745381C>T	ENST00000298910.7	+	44	6480	c.6422C>T	c.(6421-6423)aCg>aTg	p.T2141M		NM_198578.3	NP_940980.3	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	2141			T -> M (in PARK8).		activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding	p.T2141M(1)|p.T2148M(1)		NS(3)|biliary_tract(1)|breast(6)|central_nervous_system(2)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(1)|kidney(23)|large_intestine(31)|lung(55)|ovary(15)|pancreas(2)|prostate(4)|skin(4)|stomach(9)|upper_aerodigestive_tract(7)|urinary_tract(2)	181	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GTCTGTCTGACGAGACGCATT	0.388000													9	24					0	0	1	0	0
OR12D3	81797	broad.mit.edu	37	6	29342445	29342445	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr6:29342445C>T	ENST00000396806.3	-	1	623	c.620G>A	c.(619-621)gGa>gAa	p.G207E	OR5V1_ENST00000377154.1_Intron	NM_030959.2	NP_112221.1	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D, member 3	207					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|endometrium(2)|kidney(2)|large_intestine(6)|lung(6)|ovary(2)|skin(1)|upper_aerodigestive_tract(3)	23						AAAGAAAGCTCCCATGGATAT	0.448000													17	60					0	0	1	0	0
KCNJ9	3765	broad.mit.edu	37	1	160054053	160054053	+	Missense_Mutation	SNP	T	T	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:160054053T>A	ENST00000368088.3	+	2	475	c.233T>A	c.(232-234)aTc>aAc	p.I78N		NM_004983.2	NP_004974.2	Q92806	IRK9_HUMAN	potassium inwardly-rectifying channel, subfamily J, member 9	78					synaptic transmission	integral to membrane|plasma membrane	G-protein activated inward rectifier potassium channel activity|protein binding			biliary_tract(1)|endometrium(3)|large_intestine(3)|liver(1)|lung(5)|ovary(1)|skin(2)	16	all_cancers(52;5.86e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTCGGCGCCATCTGGTGGCTG	0.662000													9	18					0	0	1	0	0
LRPPRC	10128	broad.mit.edu	37	2	44145498	44145498	+	Missense_Mutation	SNP	T	T	C			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr2:44145498T>C	ENST00000260665.7	-	28	2993	c.2936A>G	c.(2935-2937)aAt>aGt	p.N979S		NM_133259.3	NP_573566.2	P42704	LPPRC_HUMAN	leucine-rich pentatricopeptide repeat containing	979					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			breast(3)|endometrium(3)|kidney(5)|large_intestine(9)|lung(15)|ovary(2)|prostate(2)|skin(2)	41		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TTGGATTTTATTCCAGACTGC	0.338000													6	20					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32802773	32802773	+	Missense_Mutation	SNP	T	T	C			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr13:32802773T>C	ENST00000380250.3	+	40	5883	c.5387T>C	c.(5386-5388)aTt>aCt	p.I1796T		NM_023037.2	NP_075463.2	Q5TBA9	FRY_HUMAN	furry homolog (Drosophila)	1796					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				NS(3)|breast(4)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(31)|lung(50)|ovary(5)|pancreas(1)|prostate(6)|skin(9)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	132		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AACAAGCTCATTGAGTTTCTC	0.493000													23	52					0	0	1	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387368	46387368	+	Silent	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr19:46387368G>A	ENST00000302165.3	-	1	2008	c.1665C>T	c.(1663-1665)gtC>gtT	p.V555V		NM_015649.1	NP_056464.1	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein 1	555					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				cervix(1)|kidney(1)|lung(2)	4		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		CGGAGGAGCCGACCAGCGGGC	0.632000													7	23					0	0	1	0	0
GBF1	8729	broad.mit.edu	37	10	104136068	104136068	+	Missense_Mutation	SNP	A	A	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr10:104136068A>T	ENST00000369983.3	+	31	4183	c.3923A>T	c.(3922-3924)aAt>aTt	p.N1308I		NM_001199378.1|NM_001199379.1|NM_004193.2	NP_001186307.1|NP_001186308.1|NP_004184.1	Q92538	GBF1_HUMAN	golgi brefeldin A resistant guanine nucleotide exchange factor 1	1308					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(14)|kidney(8)|large_intestine(15)|lung(19)|ovary(1)|pancreas(1)|prostate(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	71		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		TACCATCAGAATGACGTGAGC	0.582000													15	19					0	0	1	0	0
HUS1B	135458	broad.mit.edu	37	6	656774	656774	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr6:656774C>T	ENST00000380907.2	-	1	189	c.171G>A	c.(169-171)gaG>gaA	p.E57E	EXOC2_ENST00000230449.4_Intron|EXOC2_ENST00000448181.3_Intron	NM_148959.3	NP_683762.2	Q8NHY5	HUS1B_HUMAN	HUS1 checkpoint homolog b (S. pombe)	57										endometrium(3)|large_intestine(1)|lung(7)	11	Ovarian(93;0.0733)	Breast(5;0.00139)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.041)|BRCA - Breast invasive adenocarcinoma(62;0.0965)		CCTGCCGCACCTCGCACCACA	0.692000													5	13					0	0	1	0	0
FGF21	26291	broad.mit.edu	37	19	49261318	49261318	+	Silent	SNP	A	A	C			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr19:49261318A>C	ENST00000593756.1	+	4	1043	c.471A>C	c.(469-471)gcA>gcC	p.A157A	FGF21_ENST00000222157.3_Silent_p.A157A			Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21	157					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)|cervix(2)|kidney(1)|large_intestine(1)|lung(2)|upper_aerodigestive_tract(1)	8		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		GGGACCCTGCACCCCGAGGAC	0.682000													18	76					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233296140	233296140	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:233296140C>T	ENST00000258229.8	-	19	3640	c.3406G>A	c.(3406-3408)Gtg>Atg	p.V1136M	PCNXL2_ENST00000488780.2_Missense_Mutation_p.V269M|PCNXL2_ENST00000520463.1_5'UTR	NM_014801.3	NP_055616.3	A6NKB5	PCX2_HUMAN	pecanex-like 2 (Drosophila)	1136						integral to membrane				NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(16)|kidney(7)|large_intestine(19)|lung(30)|pancreas(1)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	86		all_cancers(173;0.0347)|Prostate(94;0.137)				ACAAACCCCACGGCTCCAGCC	0.498000													5	32					0	0	1	0	0
ARL4D	379	broad.mit.edu	37	17	41477145	41477145	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr17:41477145C>T	ENST00000320033.4	+	2	252	c.45C>T	c.(43-45)ttC>ttT	p.F15F		NM_001661.3	NP_001652.2	P49703	ARL4D_HUMAN	ADP-ribosylation factor-like 4D	15					protein secretion|small GTPase mediated signal transduction	cytoplasm|nucleolus|plasma membrane	GTP binding|GTPase activity|protein binding			endometrium(1)|large_intestine(1)|lung(3)|ovary(1)|prostate(1)|urinary_tract(1)	8		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.155)		CCTCCTCCTTCTTGCCCCACT	0.562000													7	59					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104640456	104640456	+	Missense_Mutation	SNP	T	T	C			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr4:104640456T>C	ENST00000304883.2	-	1	517	c.377A>G	c.(376-378)aAc>aGc	p.N126S		NM_001059.2	NP_001050.1	P29371	NK3R_HUMAN	tachykinin receptor 3	126						integral to plasma membrane	tachykinin receptor activity			breast(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(19)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	51		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GAAAGCCAGGTTCACAAGGAA	0.547000													14	40					0	0	1	0	0
NBPF15	284565	broad.mit.edu	37	1	148594434	148594434	+	Missense_Mutation	SNP	G	G	A	rs143361250	byFrequency	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:148594434G>A	ENST00000442702.2	+	21	2874	c.1807G>A	c.(1807-1809)Gtc>Atc	p.V603I	NBPF15_ENST00000369187.3_Missense_Mutation_p.V603I	NM_001170755.1	NP_001164226.1	Q8N660	NBPFF_HUMAN	neuroblastoma breakpoint family, member 15	603	NBPF 6.					cytoplasm				NS(1)|cervix(1)|endometrium(1)|large_intestine(4)|lung(3)|skin(2)	12	all_hematologic(923;0.032)					AGAGCCTGAAGTCTTACAGGA	0.458000													5	162					0	0	1	0	0
MVB12B	89853	broad.mit.edu	37	9	129148885	129148885	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr9:129148885C>T	ENST00000361171.3	+	4	438	c.357C>T	c.(355-357)atC>atT	p.I119I	MVB12B_ENST00000545391.1_Silent_p.I119I|MVB12B_ENST00000535766.1_Silent_p.I112I|MVB12B_ENST00000436593.3_Silent_p.I104I	NM_033446.2	NP_258257.1			multivesicular body subunit 12B																		TCATTGACATCAAGGACACAC	0.453000													3	32					0	0	1	0	0
HIST1H2BG	8339	broad.mit.edu	37	6	26216705	26216705	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr6:26216705G>A	ENST00000244601.3	-	1	167	c.167C>T	c.(166-168)tCa>tTa	p.S56L		NM_003518.3	NP_003509.1	P62807	H2B1C_HUMAN	histone cluster 1, H2bg	56					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			endometrium(1)|large_intestine(1)|lung(3)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	8		all_hematologic(11;0.196)				GGCCTTGGATGAGATGCCAGT	0.537000													19	168					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49689757	49689757	+	Missense_Mutation	SNP	C	C	G			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr3:49689757C>G	ENST00000296452.4	+	5	2882	c.2768C>G	c.(2767-2769)aCc>aGc	p.T923S		NM_003458.3	NP_003449.2	Q9UPA5	BSN_HUMAN	bassoon presynaptic cytomatrix protein	923					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			breast(8)|central_nervous_system(2)|cervix(2)|endometrium(16)|kidney(3)|large_intestine(17)|lung(37)|ovary(7)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	106				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGCAGTGGGACCCTGCAGGGT	0.632000													16	44					0	0	1	0	0
PEX5	5830	broad.mit.edu	37	12	7362742	7362742	+	Missense_Mutation	SNP	G	G	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:7362742G>T	ENST00000266563.5	+	15	1915	c.1732G>T	c.(1732-1734)Ggc>Tgc	p.G578C	PEX5_ENST00000412720.2_Missense_Mutation_p.G636C|PEX5_ENST00000434354.2_Missense_Mutation_p.G630C|PEX5_ENST00000266564.3_Missense_Mutation_p.G607C|PEX5_ENST00000420616.2_Missense_Mutation_p.G615C|PEX5_ENST00000455147.2_Missense_Mutation_p.G615C	NM_001131024.1	NP_001124496.1	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5	615					protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			breast(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(8)|ovary(1)|prostate(1)|skin(1)	21						GTCTATGTTAGGCCAGAGCGA	0.622000													19	65					4.35082e-09	4.62706e-09	1	1	0
WBP7	0	broad.mit.edu	37	19	36216141	36216141	+	Silent	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr19:36216141C>T	ENST00000222270.7	+	11	3549	c.3549C>T	c.(3547-3549)aaC>aaT	p.N1183N	WBP7_ENST00000420124.1_Silent_p.N1183N|KMT2B_ENST00000607650.1_RNA	NM_014727.1	NP_055542.1																					ATTTAGAGAACGTGTGGCTGA	0.592000													8	19					0	0	1	0	0
AC008103.5	0	broad.mit.edu	37	22	18846025	18846025	+	RNA	SNP	G	G	C	rs5993363		TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr22:18846025G>C	ENST00000412938.1	+	0	3383																											GACGTTGAAGGCTGCCTTCAG	0.647000													4	62					0	0	1	0	0
AC024560.3	0	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	A	G	rs144273946	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr3:197348674A>G	ENST00000418868.1	-	0	585					NR_003266.2																						GGCTCTGTCCACCAAATGCAC	0.478000													4	105					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	G	A	rs77484671		TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:145367767G>A	ENST00000342960.5	+	83	10398	c.10363G>A	c.(10363-10365)Gaa>Aaa	p.E3455K	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	3455								p.E3455K(5)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		atcaaagaaggaaagaagaag	0.423000													4	50					0	0	1	0	0
TUBBP5	0	broad.mit.edu	37	9	141070317	141070317	+	RNA	SNP	A	A	G			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr9:141070317A>G	ENST00000503395.1	+	0	1397																											CCTCTCTTAAACGGGCTTCGG	0.617000													2	2					0	0	1	0	0
PHACTR3	116154	broad.mit.edu	37	20	58349335	58349335	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr20:58349335C>T	ENST00000371015.1	+	7	1431	c.964C>T	c.(964-966)Cgg>Tgg	p.R322W	PHACTR3_ENST00000361300.4_Missense_Mutation_p.R211W|PHACTR3_ENST00000355648.4_Missense_Mutation_p.R281W|PHACTR3_ENST00000541461.1_Missense_Mutation_p.R281W|PHACTR3_ENST00000395636.2_Missense_Mutation_p.R281W|PHACTR3_ENST00000359926.3_Missense_Mutation_p.R319W|PHACTR3_ENST00000395639.4_Missense_Mutation_p.R211W	NM_080672.3	NP_542403.1	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3	322						nuclear matrix	actin binding|protein phosphatase inhibitor activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(13)|liver(2)|lung(32)|ovary(3)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	59	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			TCCAAAGAAGCGGCTGGATGT	0.537000													13	34					0	0	1	0	0
FOLH1	2346	broad.mit.edu	37	11	49175929	49175929	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr11:49175929C>T	ENST00000340334.7	-	17	2062	c.1694G>A	c.(1693-1695)cGa>cAa	p.R565Q	FOLH1_ENST00000256999.2_Missense_Mutation_p.R580Q|FOLH1_ENST00000356696.3_Missense_Mutation_p.R580Q|FOLH1_ENST00000533034.1_Missense_Mutation_p.R565Q|FOLH1_ENST00000343844.4_Missense_Mutation_p.R272Q	NM_001193471.1|NM_001193472.1	NP_001180400.1|NP_001180401.1	Q04609	FOLH1_HUMAN	folate hydrolase (prostate-specific membrane antigen) 1	580	NAALADase.				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			NS(2)|breast(2)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(7)|lung(34)|ovary(1)|skin(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	60					Capromab(DB00089)|L-Glutamic Acid(DB00142)	CATCCCTCCTCGAACCTGGGC	0.408000													18	46					0	0	1	0	0
RABEP2	79874	broad.mit.edu	37	16	28931263	28931263	+	Splice_Site	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr16:28931263G>A	ENST00000358201.4	-	3	864	c.274_splice	c.e3-1	p.D92_splice	RABEP2_ENST00000544477.1_Splice_Site_p.D21_splice|RABEP2_ENST00000357573.6_Splice_Site_p.D92_splice|RABEP2_ENST00000561803.1_5'UTR	NM_024816.2	NP_079092.2	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	92					endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(3)|lung(6)|ovary(1)|skin(1)	16						TGCTGATGGAGTCTGGTgggg	0.627000													3	18					0	0	1	0	0
GGTLC1	92086	broad.mit.edu	37	20	23967157	23967157	+	Missense_Mutation	SNP	A	A	G			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr20:23967157A>G	ENST00000335694.4	-	2	296	c.92T>C	c.(91-93)aTg>aCg	p.M31T	GGTLC1_ENST00000286890.4_Missense_Mutation_p.M31T|GGTLC1_ENST00000278765.4_Missense_Mutation_p.M31T	NM_178311.2	NP_842563.1	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	31							gamma-glutamyltransferase activity	p.M31T(6)		NS(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(8)|ovary(1)|upper_aerodigestive_tract(1)	15						GTCATCCGGCATGTAGAACTC	0.622000													4	58					0	0	1	0	0
CELF3	11189	broad.mit.edu	37	1	151680008	151680008	+	Silent	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:151680008G>A	ENST00000290583.4	-	7	1540	c.747C>T	c.(745-747)atC>atT	p.I249I	CELF3_ENST00000290585.4_Silent_p.I249I|CELF3_ENST00000470688.1_5'UTR|CELF3_ENST00000392706.3_Silent_p.I66I|RP11-98D18.1_ENST00000457548.1_RNA	NM_001172648.1|NM_007185.4	NP_001166119.1|NP_009116.3	Q5SZQ8	CELF3_HUMAN	CUGBP, Elav-like family member 3	249					nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	mRNA binding|nucleotide binding			central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(5)|lung(6)|ovary(1)|prostate(1)	21						TGGGGGTGGCGATGAGGCCAT	0.647000													7	23					0	0	1	0	0
UBBP4	0	broad.mit.edu	37	17	21730847	21730847	+	Missense_Mutation	SNP	G	G	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr17:21730847G>T	ENST00000584755.1	+	2	546	c.149G>T	c.(148-150)cGg>cTg	p.R50L	UBBP4_ENST00000583708.1_Intron|UBBP4_ENST00000578713.1_Missense_Mutation_p.R50L|UBBP4_ENST00000584398.1_Intron																endometrium(9)|kidney(4)|lung(4)|prostate(3)|urinary_tract(4)	24						GGCAAGCAGCGGGAAGATGGC	0.522000													4	48					0.00909568	0.00923349	1	1	0
CLDN14	23562	broad.mit.edu	37	21	37833680	37833680	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr21:37833680G>A	ENST00000399137.1	-	3	1180	c.314C>T	c.(313-315)aCg>aTg	p.T105M	CLDN14_ENST00000342108.2_Missense_Mutation_p.T105M|CLDN14_ENST00000399136.1_Missense_Mutation_p.T105M|AP000695.6_ENST00000429588.1_RNA|CLDN14_ENST00000399139.1_Missense_Mutation_p.T105M|AP000695.4_ENST00000428667.1_RNA|CLDN14_ENST00000399135.1_Missense_Mutation_p.T105M	NM_144492.2	NP_652763.1	O95500	CLD14_HUMAN	claudin 14	105					calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity			endometrium(1)|lung(5)|skin(1)	7						GGCGCAGCGCGTGCACTTCAT	0.687000													26	59					0	0	1	0	0
DNM1P47	0	broad.mit.edu	37	15	102292809	102292809	+	RNA	SNP	C	C	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr15:102292809C>A	ENST00000561463.1	+	0	855																											AACCTGCACTCGCGTGGGAAC	0.602000													3	35					1	1	1	1	0
GUSBP1	0	broad.mit.edu	37	5	21491446	21491446	+	RNA	SNP	G	G	T	rs150396680	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr5:21491446G>T	ENST00000607545.1	+	0	179					NR_027026.1																						TGAATTACCAGATCTCCGTCA	0.532000													4	34					3.99206e-14	4.314e-14	1	1	0
MMP12	4321	broad.mit.edu	37	11	102736506	102736506	+	RNA	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr11:102736506C>T	ENST00000532855.1	-	0	1301							P39900	MMP12_HUMAN	matrix metallopeptidase 12 (macrophage elastase)						positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			autonomic_ganglia(1)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(4)|lung(9)|prostate(5)|skin(1)|upper_aerodigestive_tract(1)	26		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	TTAAAACTCACCTCCAATACT	0.383000													5	9					0	0	1	0	0
TCTN2	79867	broad.mit.edu	37	12	124179517	124179517	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:124179517C>T	ENST00000303372.5	+	10	1356	c.1228C>T	c.(1228-1230)Cag>Tag	p.Q410*	TCTN2_ENST00000426174.2_Nonsense_Mutation_p.Q409*	NM_001143850.2|NM_024809.4	NP_001137322.1|NP_079085.2	Q96GX1	TECT2_HUMAN	tectonic family member 2	410					cilium assembly|smoothened signaling pathway	integral to membrane				breast(2)|cervix(2)|endometrium(4)|kidney(1)|large_intestine(4)|lung(12)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	30	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		TAATGCCCACCAGAAAGGTAA	0.299000													10	32					0	0	1	0	0
SDHAP1	0	broad.mit.edu	37	3	195717061	195717061	+	RNA	SNP	C	C	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr3:195717061C>A	ENST00000427841.1	-	0	89					NR_003264.2																						AGGGACTCACCGCCTTGGCCA	0.791000													7	12					0.00448238	0.0046203	1	1	0
ZNF619	285267	broad.mit.edu	37	3	40529513	40529513	+	Silent	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr3:40529513G>A	ENST00000447116.2	+	6	1939	c.1632G>A	c.(1630-1632)ctG>ctA	p.L544L	ZNF619_ENST00000522736.1_Silent_p.L495L|ZNF619_ENST00000429348.2_Silent_p.L504L|ZNF619_ENST00000314686.5_Silent_p.L488L|ZNF619_ENST00000520737.1_3'UTR|ZNF619_ENST00000456778.1_Silent_p.L460L|ZNF619_ENST00000432264.2_Silent_p.L504L|ZNF619_ENST00000521353.1_Silent_p.L544L	NM_001145082.2	NP_001138554.1	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619	544					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			breast(1)|cervix(1)|endometrium(2)|large_intestine(7)|lung(6)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)	21				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TCTCTCCTCTGCCTCCCCAAC	0.547000													18	49					0	0	1	0	0
ZNF572	137209	broad.mit.edu	37	8	125989619	125989619	+	Missense_Mutation	SNP	A	A	G			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr8:125989619A>G	ENST00000319286.5	+	3	1263	c.1109A>G	c.(1108-1110)aAt>aGt	p.N370S		NM_152412.2	NP_689625.2	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	370					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(11)|ovary(3)|skin(2)|upper_aerodigestive_tract(3)	31	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			CAGAACTGCAATGTGATAGAA	0.393000										HNSCC(60;0.17)			3	51					0	0	1	0	0
PDLIM5	10611	broad.mit.edu	37	4	95496948	95496948	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr4:95496948C>T	ENST00000317968.4	+	5	609	c.473C>T	c.(472-474)tCa>tTa	p.S158L	PDLIM5_ENST00000542407.1_Missense_Mutation_p.S36L|PDLIM5_ENST00000380180.3_Intron|PDLIM5_ENST00000437932.1_Intron|PDLIM5_ENST00000508216.1_Intron|PDLIM5_ENST00000538141.1_Intron|PDLIM5_ENST00000514743.1_Intron|PDLIM5_ENST00000318007.5_Intron|PDLIM5_ENST00000450793.1_Intron	NM_001256428.1|NM_006457.4	NP_001243357.1|NP_006448.4	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5	158					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(5)|lung(3)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	22		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		GCGACCACCTCATCACATGCT	0.547000													12	192					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913377		TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr7:140453136A>T	ENST00000288602.6	-	15	1859	c.1799T>A	c.(1798-1800)gTg>gAg	p.V600E		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	v-raf murine sarcoma viral oncogene homolog B	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(15453)|p.V600K(252)|p.V600R(44)|p.V600D(16)|p.V600A(12)|p.V600_K601>E(12)|p.V600G(11)|p.T599_R603>I(2)|p.V600Q(2)|p.V600_S605>EK(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insDFGLAT(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	NS(588)|adrenal_gland(3)|autonomic_ganglia(3)|biliary_tract(29)|bone(7)|breast(21)|central_nervous_system(99)|cervix(6)|endometrium(33)|eye(72)|gastrointestinal_tract_(site_indeterminate)(2)|genital_tract(4)|haematopoietic_and_lymphoid_tissue(436)|kidney(3)|large_intestine(6953)|liver(17)|lung(192)|oesophagus(4)|ovary(275)|pancreas(15)|pituitary(1)|prostate(25)|salivary_gland(1)|skin(6285)|small_intestine(12)|soft_tissue(40)|stomach(11)|testis(7)|thyroid(12220)|upper_aerodigestive_tract(13)|urinary_tract(3)	27380	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600D(K029AX_SKIN)|V600D(WM115_SKIN)|V600D(WM2664_SKIN)|V600E(8505C_THYROID)|V600E(A101D_SKIN)|V600E(A2058_SKIN)|V600E(A375_SKIN)|V600E(A673_BONE)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(BCPAP_THYROID)|V600E(BHT101_THYROID)|V600E(BT474_BREAST)|V600E(C32_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(COLO205_LARGE_INTESTINE)|V600E(COLO679_SKIN)|V600E(COLO741_SKIN)|V600E(COLO783_SKIN)|V600E(COLO800_SKIN)|V600E(COLO818_SKIN)|V600E(COLO829_SKIN)|V600E(COLO849_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(DU4475_BREAST)|V600E(ES2_OVARY)|V600E(G361_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(HS294T_SKIN)|V600E(HS695T_SKIN)|V600E(HS939T_SKIN)|V600E(IGR1_SKIN)|V600E(IGR37_SKIN)|V600E(IGR39_SKIN)|V600E(K029AX_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(LOXIMVI_SKIN)|V600E(MALME3M_SKIN)|V600E(MELHO_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(RKO_LARGE_INTESTINE)|V600E(RPMI7951_SKIN)|V600E(RVH421_SKIN)|V600E(SH4_SKIN)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(SKHEP1_LIVER)|V600E(SKMEL24_SKIN)|V600E(SKMEL28_SKIN)|V600E(SKMEL5_SKIN)|V600E(SW1417_LARGE_INTESTINE)|V600E(UACC257_SKIN)|V600E(UACC62_SKIN)|V600E(WM793_SKIN)|V600E(WM88_SKIN)|V600E(WM983B_SKIN)	61	"""Mis, T, O"""	"""AKAP9, KIAA1549"""	"""melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma"""		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				19	45					0	0	1	0	0
USP53	54532	broad.mit.edu	37	4	120169968	120169968	+	Silent	SNP	T	T	C			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr4:120169968T>C	ENST00000450251.1	+	3	847	c.303T>C	c.(301-303)gcT>gcC	p.A101A	USP53_ENST00000274030.6_Silent_p.A101A			Q70EK8	UBP53_HUMAN	ubiquitin specific peptidase 53	101					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			breast(2)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(7)|lung(5)|ovary(1)|pancreas(1)|skin(2)|stomach(1)	27						TAAGGCATGCTCTTGCAGAAA	0.408000													23	71					0	0	1	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117431414	117431414	+	Silent	SNP	T	T	G			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr7:117431414T>G	ENST00000160373.3	-	4	1927	c.1836A>C	c.(1834-1836)ccA>ccC	p.P612P		NM_033427.2	NP_219499.1	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	612										breast(3)|central_nervous_system(3)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(13)|lung(36)|ovary(4)|prostate(5)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	83	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		ATGGTTTTGGTGGCAGCTGAG	0.552000													16	19					0	0	1	0	0
RPS4X	6191	broad.mit.edu	37	X	71493125	71493125	+	Missense_Mutation	SNP	T	T	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chrX:71493125T>A	ENST00000316084.6	-	6	751	c.647A>T	c.(646-648)aAc>aTc	p.N216I	RPS4X_ENST00000486733.1_5'UTR	NM_001007.4	NP_000998.1	P62701	RS4X_HUMAN	ribosomal protein S4, X-linked	216					endocrine pancreas development|positive regulation of cell proliferation|positive regulation of translation|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|polysome	rRNA binding|structural constituent of ribosome			NS(1)|large_intestine(1)	2	Renal(35;0.156)					GGCAAAGCTGTTGCCATTGGC	0.463000													9	12					0	0	1	0	0
PRAF2	11230	broad.mit.edu	37	X	48931598	48931598	+	Silent	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chrX:48931598G>A	ENST00000376390.4	-	1	132	c.49C>T	c.(49-51)Ctg>Ttg	p.L17L	WDR45_ENST00000553851.1_Intron|PRAF2_ENST00000376386.3_Silent_p.L17L|WDR45_ENST00000376358.3_Intron	NM_007213.1	NP_009144.1			PRA1 domain family, member 2											endometrium(1)|large_intestine(3)|lung(2)|ovary(1)|upper_aerodigestive_tract(1)	8						GCCGACCCCAGAACAAAGTCG	0.632000													6	9					0	0	1	0	0
HERC2P2	0	broad.mit.edu	37	15	23283320	23283320	+	RNA	SNP	C	C	A	rs149049629	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr15:23283320C>A	ENST00000560464.1	-	0	5097																											CAGCGTGTGCCTTTTCCTTCC	0.453000													9	47					3.86212e-05	4.04316e-05	1	1	0
RYR2	6262	broad.mit.edu	37	1	237753135	237753135	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:237753135G>A	ENST00000366574.2	+	30	3958	c.3641G>A	c.(3640-3642)aGg>aAg	p.R1214K	RYR2_ENST00000542537.1_Missense_Mutation_p.R1198K|RYR2_ENST00000360064.6_Missense_Mutation_p.R1212K	NM_001035.2	NP_001026.2	Q92736	RYR2_HUMAN	ryanodine receptor 2 (cardiac)	1214	4 X approximate repeats.|B30.2/SPRY 2.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			NS(4)|breast(8)|central_nervous_system(11)|cervix(2)|endometrium(39)|haematopoietic_and_lymphoid_tissue(5)|kidney(17)|large_intestine(83)|liver(4)|lung(353)|ovary(18)|pancreas(5)|prostate(12)|skin(8)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(4)	586	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAAGTGGGTAGGATGAACTTT	0.388000													10	35					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39799059	39799060	+	Frame_Shift_Ins	INS	-	-	G			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr1:39799059_39799060insG	ENST00000564288.1	+	37	7576_7577	c.6799_6800insG	c.(6799-6801)ggafs	p.G2267fs	MACF1_ENST00000545844.1_Intron|MACF1_ENST00000567887.1_Frame_Shift_Ins_p.G2304fs|MACF1_ENST00000372915.3_Frame_Shift_Ins_p.G2272fs|MACF1_ENST00000317713.7_Intron|MACF1_ENST00000476350.1_Intron|MACF1_ENST00000539005.1_Intron|MACF1_ENST00000289893.4_Frame_Shift_Ins_p.G707fs|MACF1_ENST00000361689.2_Intron			Q9UPN3	MACF1_HUMAN	microtubule-actin crosslinking factor 1	2272					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			breast(11)|central_nervous_system(5)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(36)|lung(78)|ovary(12)|prostate(2)|skin(9)|stomach(2)|upper_aerodigestive_tract(8)|urinary_tract(10)	203	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGATAGTGGCAGGGAAATTTTT	0.391													22	78	---	---	---	---					
CCDC85A	114800	broad.mit.edu	37	2	56570085	56570085	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr2:56570085delC	ENST00000407595.2	+	3	1814	c.1312delC	c.(1312-1314)ccfs	p.P438fs	RP11-482H16.1_ENST00000607540.1_RNA	NM_001080433.1	NP_001073902.1	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	438										breast(6)|cervix(2)|endometrium(5)|kidney(1)|lung(18)|ovary(2)|pancreas(1)|prostate(3)	38			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TCGCATGCTGCCCCAGGTGGG	0.388													2	4	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1389084	1389085	+	Frame_Shift_Del	DEL	CA	CA	-	rs71299249		TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr4:1389084_1389085delCA	ENST00000324803.4	+	1	3745_3746	c.785_786delCA	c.(784-786)tfs	p.S262fs		NM_175918.3	NP_787114.2	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	262					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding			NS(3)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(11)|ovary(1)|pancreas(2)|prostate(6)|skin(4)|urinary_tract(1)	35			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACGTGCCCA	0.693													10	394	---	---	---	---					
TG	7038	broad.mit.edu	37	8	133935598	133935600	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr8:133935598_133935600delAGA	ENST00000220616.4	+	22	4584_4586	c.4544_4546delAGA	c.(4543-4548)cgg>c	p.QR1515del	TG_ENST00000542445.1_5'UTR|TG_ENST00000377869.1_Intron	NM_003235.4	NP_003226.4	P01266	THYG_HUMAN	thyroglobulin	1515	Thyroglobulin type-1 11.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			NS(1)|breast(11)|central_nervous_system(3)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(34)|liver(2)|lung(59)|ovary(9)|pancreas(2)|prostate(6)|skin(7)|stomach(4)|upper_aerodigestive_tract(4)|urinary_tract(8)	168	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACTGACTGTCAGAGGAACGAAGC	0.562													8	45	---	---	---	---					
MUC6	4588	broad.mit.edu	37	11	1017661	1017663	+	In_Frame_Del	DEL	TGT	TGT	-	rs72022620		TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr11:1017661_1017663delTGT	ENST00000421673.2	-	31	5188_5190	c.5138_5140delACA	c.(5137-5142)atc>a	p.NI1713del		NM_005961.2	NP_005952.2	Q6W4X9	MUC6_HUMAN	mucin 6, oligomeric mucus/gel-forming	1713	Approximate repeats.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			breast(1)|central_nervous_system(1)|cervix(2)|endometrium(8)|kidney(10)|large_intestine(6)|lung(43)|ovary(4)|prostate(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	80		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TTGGGGGTGATGTTGGTGGTAGA	0.527													8	822	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11546506	11546508	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:11546506_11546508delTTG	ENST00000389362.4	-	3	539_541	c.504_506delCAA	c.(502-507)aag>aa	p.NK168del	PRB1_ENST00000546254.1_Intron	NM_006248.3	NP_006239.3			proline-rich protein BstNI subfamily 2											NS(1)|breast(1)|endometrium(2)|kidney(3)|large_intestine(3)|lung(14)|pancreas(1)|prostate(5)|skin(4)|stomach(2)|urinary_tract(1)	37		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			ACTTCGGGACTTGTTGTCTCCTT	0.596													7	562	---	---	---	---					
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	TAGCTGCTACCTCCGGAGCCA	-	rs66529359	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:53069236_53069256delTAGCTGCTACCTCCGGAGCCA	ENST00000252244.3	-	9	1714_1734	c.1656_1676delTGGCTCCGGAGGTAGCAGCTA	c.(1654-1677)tac>ta	p.YGSGGSSY552del		NM_006121.3	NP_006112.3	P04264	K2C1_HUMAN	keratin 1	552	Gly/Ser-rich.|Tail.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding	p.S557_G563delSSYGSGG(3)		breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(7)|lung(11)|ovary(1)|prostate(7)|skin(3)	39						tccggagccgtagctgctacctccggagccatagctgccac	0.688													6	8	---	---	---	---					
ZFC3H1	196441	broad.mit.edu	37	12	72057256	72057258	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:72057256_72057258delGCT	ENST00000378743.3	-	1	491_493	c.133_135delAGC	c.(133-135)del	p.S45del	THAP2_ENST00000308086.2_5'UTR|ZFC3H1_ENST00000548100.1_In_Frame_Del_p.S45del|ZFC3H1_ENST00000552037.1_In_Frame_Del_p.S45del	NM_144982.4	NP_659419.3	O60293	ZC3H1_HUMAN	zinc finger, C3H1-type containing	45	Ser-rich.				RNA processing	intracellular	metal ion binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(4)|large_intestine(12)|lung(31)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	69						GCCCGCCGCCGCTGCTGCTGCTG	0.631											OREG0021993	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	167	---	---	---	---					
EP400	57634	broad.mit.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAG	rs113304321	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr12:132547093_132547094insCAG	ENST00000333577.4	+	48	8398_8399	c.8289_8290insCAG	c.(8287-8292)caagca>caCAGagca	p.2763_2763Q>HR	EP400_ENST00000389562.2_In_Frame_Ins_p.2726_2726Q>HR|EP400_ENST00000389561.2_In_Frame_Ins_p.2727_2727Q>HR|EP400_ENST00000330386.6_In_Frame_Ins_p.2646_2646Q>HR|EP400_ENST00000332482.4_In_Frame_Ins_p.2690_2690Q>HR			Q96L91	EP400_HUMAN	E1A binding protein p400	2763	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2726Q(9)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcaacaacagcagcagca	0.564													9	56	---	---	---	---					
TRAV24	0	broad.mit.edu	37	14	22573824	22573825	+	RNA	INS	-	-	A	rs112427980	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr14:22573824_22573825insA	ENST00000390453.1	+	0	55																											TGACTCTTTTTTAAAAAAACAG	0.450													8	7	---	---	---	---					
SNHG14	0	broad.mit.edu	37	15	25481200	25481201	+	RNA	INS	-	-	T			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr15:25481200_25481201insT	ENST00000453082.2	+	0	1934					NR_003343.1																						TCCACTGGAAGTTTTTTTTGCG	0.510													7	247	---	---	---	---					
SMPD3	55512	broad.mit.edu	37	16	68397725	68397725	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr16:68397725delC	ENST00000219334.5	-	6	2203	c.1600delG	c.(1600-1602)acfs	p.D534fs	SMPD3_ENST00000563226.1_Frame_Shift_Del_p.D534fs|SMPD3_ENST00000568373.1_Frame_Shift_Del_p.D534fs	NM_018667.3	NP_061137.1	Q9NY59	NSMA2_HUMAN	sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	534					cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			breast(1)|endometrium(2)|large_intestine(5)|lung(7)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	21		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	CGGCAGGGGTCCCTGTAGTGG	0.672													2	4	---	---	---	---					
C16orf3	750	broad.mit.edu	37	16	90095597	90095598	+	In_Frame_Ins	INS	-	-	GGGGCAGCCTACGGGGCAGGCTGC	rs61118444	by1000genomes	TCGA-DE-A4MD-06A-11D-A257-08	TCGA-DE-A4MD-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d294b023-c938-4b6e-8520-014132590676	59a49a5a-e5fc-4684-b043-d5992e423463	g.chr16:90095597_90095598insGGGGCAGCCTACGGGGCAGGCTGC	ENST00000408886.2	-	1	711_712	c.153_154insGCAGCCTGCCCCGTAGGCTGCCCC	c.(151-156)cctagc>ccGCAGCCTGCCCCGTAGGCTGCCCCtagc	p.50_51insPQPAP*AA	GAS8_ENST00000540721.1_Intron|GAS8_ENST00000536122.1_Intron|GAS8_ENST00000268699.4_Intron	NM_001214.3	NP_001205.3	O95177	CP003_HUMAN	chromosome 16 open reading frame 3	50			Missing (in short isoform).							large_intestine(1)|lung(2)|prostate(1)	4		all_cancers(9;9.01e-08)|Hepatocellular(780;0.000325)|Lung NSC(15;0.0104)|all_lung(18;0.0239)		BRCA - Breast invasive adenocarcinoma(80;0.0272)		gggcaggctatggggcagccta	0.663													9	20	---	---	---	---					
