Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PTPRR	5801	broad.mit.edu	37	12	71139698	71139698	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr12:71139698C>T	ENST00000283228.2	-	6	1359	c.907G>A	c.(907-909)Gtg>Atg	p.V303M	PTPRR_ENST00000342084.4_Missense_Mutation_p.V191M|PTPRR_ENST00000440835.2_Missense_Mutation_p.V58M|PTPRR_ENST00000549308.1_Missense_Mutation_p.V58M|PTPRR_ENST00000378778.1_Missense_Mutation_p.V97M	NM_002849.3	NP_002840.2	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	303					in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|lung(22)|ovary(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(1)	41			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TGAGGGTCCACGACAACATTC	0.537000													21	36					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75594619	75594619	+	Splice_Site	SNP	A	A	T			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr5:75594619A>T	ENST00000502798.2	+	10	1945	c.1502_splice	c.e10-1	p.R501_splice	SV2C_ENST00000322285.7_Splice_Site_p.R501_splice|RP11-466P24.6_ENST00000502589.1_RNA	NM_014979.1	NP_055794.1	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	501					neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			NS(1)|breast(1)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(5)|lung(14)|ovary(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	37		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TGTTGGGCAGATTCATAGGGG	0.378000													40	67					0	0	1	0	0
AKAP8	10270	broad.mit.edu	37	19	15482768	15482768	+	Missense_Mutation	SNP	T	T	C			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr19:15482768T>C	ENST00000269701.2	-	7	1093	c.1033A>G	c.(1033-1035)Aag>Gag	p.K345E		NM_005858.3	NP_005849.1	O43823	AKAP8_HUMAN	A kinase (PRKA) anchor protein 8	345					signal transduction	nuclear matrix				breast(2)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(4)|kidney(1)|large_intestine(5)|lung(6)|ovary(2)	26						CTTACACCCTTGAATTCTTCA	0.527000													3	52					0	0	1	0	0
HAUS6	54801	broad.mit.edu	37	9	19093294	19093294	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr9:19093294C>T	ENST00000380502.3	-	4	778	c.311G>A	c.(310-312)tGt>tAt	p.C104Y		NM_017645.3	NP_060115.3	Q7Z4H7	HAUS6_HUMAN	HAUS augmin-like complex, subunit 6	104					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleus|spindle				autonomic_ganglia(1)|breast(2)|endometrium(2)|kidney(1)|large_intestine(6)|lung(10)|ovary(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	27						GCTACTTCCACATTCACCCTA	0.343000													14	20					0	0	1	0	0
OR13H1	347468	broad.mit.edu	37	X	130678747	130678747	+	Missense_Mutation	SNP	C	C	T			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chrX:130678747C>T	ENST00000338616.3	+	1	798	c.700C>T	c.(700-702)Ctc>Ttc	p.L234F		NM_001004486.1	NP_001004486.1	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H, member 1	234					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(3)|large_intestine(3)|lung(7)|prostate(1)|skin(1)	15	Acute lymphoblastic leukemia(192;0.000636)					CCAGGGCAGGCTCAAGGCCTT	0.493000													4	158					0	0	1	0	0
MT-CO1	4512	broad.mit.edu	37	MT	6924	6924	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chrM:6924G>A	ENST00000361624.2	+	1	1021	c.1021G>A	c.(1021-1023)Gcc>Acc	p.341_341insT						mitochondrially encoded cytochrome c oxidase I											breast(4)|endometrium(25)|kidney(19)|lung(3)|prostate(3)	54						CAGTGCTCTGAGCCCTAGGAT	0.483000													7	16					0	0	1	0	0
CNR1	0	broad.mit.edu	37	6	88854552	88854552	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr6:88854552G>A	ENST00000537554.1	-	2	4004	c.442C>T	c.(442-444)Cgc>Tgc	p.R148C	CNR1_ENST00000362094.5_3'UTR|CNR1_ENST00000369501.2_Missense_Mutation_p.R148C|CNR1_ENST00000428600.2_Missense_Mutation_p.R148C|CNR1_ENST00000369499.2_Missense_Mutation_p.R148C|CNR1_ENST00000535130.1_Missense_Mutation_p.R148C|CNR1_ENST00000549890.1_Missense_Mutation_p.R148C|CNR1_ENST00000549716.1_Missense_Mutation_p.R87C|CNR1_ENST00000468898.1_Missense_Mutation_p.R115C	NM_001160226.1|NM_001160258.1	NP_001153698.1|NP_001153730.1	P21554	CNR1_HUMAN	cannabinoid receptor 1 (brain)	148					G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			breast(2)|endometrium(3)|kidney(1)|large_intestine(7)|liver(1)|lung(11)|prostate(1)|skin(10)|urinary_tract(1)	37		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	GGCCTGCAGCGGAGGCTGCGG	0.607000													14	19					0	0	1	0	0
ARHGEF40	55701	broad.mit.edu	37	14	21542982	21542982	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr14:21542982G>A	ENST00000298694.4	+	3	1220	c.1093G>A	c.(1093-1095)Gct>Act	p.A365T	ARHGEF40_ENST00000298693.3_Missense_Mutation_p.A365T			Q8TER5	ARH40_HUMAN	Rho guanine nucleotide exchange factor (GEF) 40	365	Gly-rich.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(4)|ovary(3)|upper_aerodigestive_tract(2)	9						AGGCCAGGGGGCTGAAGGACC	0.637000													20	18					0	0	1	0	0
KANK1	23189	broad.mit.edu	37	9	734778	734778	+	Silent	SNP	A	A	G			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr9:734778A>G	ENST00000382303.1	+	11	3928	c.3276A>G	c.(3274-3276)gcA>gcG	p.A1092A	KANK1_ENST00000382293.3_Silent_p.A934A|KANK1_ENST00000489369.1_3'UTR|KANK1_ENST00000382297.2_Silent_p.A1092A	NM_001256876.1	NP_001243805.1	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1	1092					negative regulation of actin filament polymerization	cytoplasm				autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(7)|kidney(3)|large_intestine(9)|lung(8)|ovary(3)|pancreas(1)|prostate(3)|stomach(4)|upper_aerodigestive_tract(1)	43		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TGTTGTCTGCATGCAACTTAC	0.363000													12	24					0	0	1	0	0
LRFN3	79414	broad.mit.edu	37	19	36431282	36431282	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr19:36431282G>A	ENST00000588831.1	+	3	2009	c.955G>A	c.(955-957)Gca>Aca	p.A319T	LRFN3_ENST00000246529.3_Missense_Mutation_p.A319T			Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III domain containing 3	319	Ig-like.				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane				cervix(1)|kidney(1)|large_intestine(1)|lung(6)|prostate(2)|upper_aerodigestive_tract(1)	12	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCGCTGCCGGGCAGTGGGGGA	0.716000													6	6					0	0	1	0	0
GAS2L3	283431	broad.mit.edu	37	12	101005793	101005793	+	Missense_Mutation	SNP	A	A	G			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr12:101005793A>G	ENST00000537247.1	+	6	961	c.7A>G	c.(7-9)Aaa>Gaa	p.K3E	GAS2L3_ENST00000266754.5_Missense_Mutation_p.K107E|GAS2L3_ENST00000539410.1_Missense_Mutation_p.K107E|GAS2L3_ENST00000547754.1_Missense_Mutation_p.K107E			Q86XJ1	GA2L3_HUMAN	growth arrest-specific 2 like 3	107					cell cycle arrest					endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(15)|pancreas(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	35						TCCAATGAGAAAAGTGCCCTG	0.353000													5	63					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167096881	167096881	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr1:167096881G>A	ENST00000361200.2	+	6	2679	c.2513G>A	c.(2512-2514)cGg>cAg	p.R838Q	DUSP27_ENST00000443333.1_Missense_Mutation_p.R838Q|DUSP27_ENST00000485151.1_Intron|DUSP27_ENST00000271385.5_Missense_Mutation_p.R838Q			Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27 (putative)	838					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(4)|kidney(2)|large_intestine(11)|liver(1)|lung(46)|ovary(5)|prostate(5)|skin(4)|upper_aerodigestive_tract(3)	89						GAACTTGGCCGGAAGGAGAAG	0.517000													5	59					0	0	1	0	0
PRSS53	339105	broad.mit.edu	37	16	31098889	31098889	+	Missense_Mutation	SNP	A	A	G			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr16:31098889A>G	ENST00000280606.6	-	3	364	c.211T>C	c.(211-213)Tgg>Cgg	p.W71R	RP11-196G11.1_ENST00000529564.1_Missense_Mutation_p.W146R	NM_001039503.2	NP_001034592.1	Q2L4Q9	PRS53_HUMAN	protease, serine, 53	71	Peptidase S1 1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)|lung(3)	4						GTGAGGACCCAGGTGTCTGCC	0.627000													3	24					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46835246	46835246	+	Missense_Mutation	SNP	C	C	G			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr22:46835246C>G	ENST00000262738.3	-	3	4245	c.4246G>C	c.(4246-4248)Ggc>Cgc	p.G1416R		NM_014246.1	NP_055061.1	Q9NYQ6	CELR1_HUMAN	cadherin, EGF LAG seven-pass G-type receptor 1	1416	EGF-like 3; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			breast(8)|central_nervous_system(5)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(5)|kidney(4)|large_intestine(13)|lung(27)|ovary(2)|pancreas(2)|prostate(3)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(3)	95		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ACGCAGGTGCCCCCGTTCTTG	0.647000													10	37					0	0	1	0	0
PAXIP1	22976	broad.mit.edu	37	7	154754101	154754101	+	Missense_Mutation	SNP	A	A	C			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr7:154754101A>C	ENST00000404141.1	-	10	2211	c.2057T>G	c.(2056-2058)aTg>aGg	p.M686R	PAXIP1_ENST00000473219.1_5'UTR|PAXIP1_ENST00000397192.1_Missense_Mutation_p.M686R			Q6ZW49	PAXI1_HUMAN	PAX interacting (with transcription-activation domain) protein 1	686	BRCT 3.|Interaction with TP53BP1.				DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				NS(1)|breast(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(9)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|urinary_tract(1)	33	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		CGGCGGTACCATTTTCTTCTT	0.438000													14	24					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101797195	101797195	+	Missense_Mutation	SNP	A	A	G			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr13:101797195A>G	ENST00000251127.6	-	16	1973	c.1892T>C	c.(1891-1893)cTg>cCg	p.L631P		NM_052867.2	NP_443099.1	Q8IZF0	NALCN_HUMAN	sodium leak channel, non-selective	631						integral to membrane	sodium channel activity|voltage-gated ion channel activity			NS(1)|autonomic_ganglia(2)|breast(6)|central_nervous_system(2)|cervix(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(3)|kidney(10)|large_intestine(33)|liver(2)|lung(81)|ovary(8)|pancreas(3)|prostate(5)|skin(6)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	177	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AAAGATTCGCAGGCGTAAAGG	0.353000													4	138					0	0	1	0	0
DDX11	1663	broad.mit.edu	37	12	31238023	31238023	+	Missense_Mutation	SNP	G	G	A			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr12:31238023G>A	ENST00000251758.5	+	5	852	c.601G>A	c.(601-603)Gaa>Aaa	p.E201K	DDX11_ENST00000545668.1_Missense_Mutation_p.E201K|DDX11_ENST00000228264.6_Missense_Mutation_p.E175K|DDX11_ENST00000542838.1_Missense_Mutation_p.E201K|DDX11_ENST00000407793.2_Missense_Mutation_p.E201K|DDX11_ENST00000350437.4_Missense_Mutation_p.E201K			Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	201	Glu-rich.|Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(11)|large_intestine(5)|lung(23)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	57	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GGTCCTCGCCGAATACGAGAG	0.617000										Multiple Myeloma(12;0.14)			4	4					0	0	1	0	0
ZNRD1-AS1	0	broad.mit.edu	37	6	29977342	29977342	+	RNA	SNP	A	A	T	rs116382006	by1000genomes	TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr6:29977342A>T	ENST00000376797.3	-	0	731				ZNRD1-AS1_ENST00000425604.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA|HLA-J_ENST00000462773.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA																							TGGGACTGAGAGGCAAGATTT	0.438000													4	57					0	0	1	0	0
MYO10	4651	broad.mit.edu	37	5	16702681	16702682	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr5:16702681_16702682insCT	ENST00000513610.1	-	24	2980_2981	c.2526_2527insAG	c.(2524-2529)gagaagfs	p.K843fs	MYO10_ENST00000427430.2_Frame_Shift_Ins_p.K200fs|MYO10_ENST00000515803.1_Frame_Shift_Ins_p.K182fs|MYO10_ENST00000505695.1_Frame_Shift_Ins_p.K182fs|MYO10_ENST00000274203.9_Frame_Shift_Ins_p.K200fs	NM_012334.2	NP_036466.2	Q9HD67	MYO10_HUMAN	myosin X	843					axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			NS(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(19)|lung(28)|ovary(2)|pancreas(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	86						GCTTCTCTTCGCTCTCTCTCTC	0.426													2	4	---	---	---	---					
CTC-338M12.9	0	broad.mit.edu	37	5	180708659	180708659	+	RNA	DEL	G	G	-			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr5:180708659delG	ENST00000412295.2	+	0	238																											AGCGGTAGGAGgggggctgga	0.711													2	4	---	---	---	---					
CUX1	1523	broad.mit.edu	37	7	101758552	101758555	+	Splice_Site	DEL	AAGT	AAGT	-			TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr7:101758552_101758555delAAGT	ENST00000360264.3	+	8	726_727	c.707_splice	c.e8+1	p.236_splice	CUX1_ENST00000550008.2_Splice_Site_p.225_splice|CUX1_ENST00000549414.2_Splice_Site_p.225_splice|CUX1_ENST00000560541.1_3'UTR|CUX1_ENST00000546411.2_Splice_Site_p.225_splice|CUX1_ENST00000292535.7_Splice_Site_p.225_splice|CUX1_ENST00000437600.4_Splice_Site_p.236_splice|CUX1_ENST00000292538.4_Splice_Site_p.236_splice|CUX1_ENST00000556210.1_Splice_Site_p.225_splice|CUX1_ENST00000425244.2_Splice_Site_p.190_splice|CUX1_ENST00000547394.2_Splice_Site_p.220_splice|CUX1_ENST00000393824.3_Splice_Site_p.199_splice	NM_001202543.1	NP_001189472.1	P39880	CUX1_HUMAN	cut-like homeobox 1	225					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)|central_nervous_system(1)|cervix(2)|endometrium(6)|kidney(3)|large_intestine(8)|lung(26)|ovary(7)|pancreas(1)|prostate(6)|skin(2)|stomach(1)|urinary_tract(5)	70						AACTACTGCAAAGTAAGTCTCTCT	0.412													22	42	---	---	---	---					
RP11-410D17.2	0	broad.mit.edu	37	16	58926335	58926336	+	RNA	INS	-	-	C	rs113534201	by1000genomes	TCGA-DE-A69K-01A-11D-A397-08	TCGA-DE-A69K-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c76f3f11-d2e6-4f77-9928-60ee989f34bd	f2f437ba-f2c0-48c9-a7d9-4840c7537311	g.chr16:58926335_58926336insC	ENST00000500117.1	+	0	679																											caccaccatcacccccactact	0.535													2	4	---	---	---	---					
