Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
IL9R	3581	broad.mit.edu	37	X	155239821	155239821	+	Missense_Mutation	SNP	G	G	A	rs140822242	byFrequency	TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chrX:155239821G>A	ENST00000424344.3	+	10	1617	c.1250G>A	c.(1249-1251)aGc>aAc	p.S417N	IL9R_ENST00000540897.1_3'UTR|IL9R_ENST00000369423.2_3'UTR|IL9R_ENST00000244174.5_Missense_Mutation_p.S438N			Q01113	IL9R_HUMAN	interleukin 9 receptor	438					cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity			NS(1)|central_nervous_system(1)|cervix(2)|endometrium(2)|kidney(3)|large_intestine(1)|lung(12)|upper_aerodigestive_tract(1)	23	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					agcagcagcagcaacaacaac	0.642000													3	18					0	0	1	0	0
PCDHB7	0	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr5:140553994G>T	ENST00000231137.3	+	1	1752	c.1578G>T	c.(1576-1578)gcG>gcT	p.A526A		NM_018940.2	NP_061763.1	Q9Y5E2	PCDB7_HUMAN		526	Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.A526A(1)		NS(2)|breast(2)|central_nervous_system(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(20)|lung(54)|ovary(5)|prostate(7)|skin(7)|upper_aerodigestive_tract(4)|urinary_tract(1)	119			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTGCAGGCGTTCGAGTTCC	0.706000													5	97					0.000157383	0.000170499	1	1	0
EPPK1	83481	broad.mit.edu	37	8	144940525	144940525	+	Missense_Mutation	SNP	C	C	A			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr8:144940525C>A	ENST00000525985.1	-	2	6968	c.6897G>T	c.(6895-6897)aaG>aaT	p.K2299N				P58107	EPIPL_HUMAN	epiplakin 1	2299						cytoplasm|cytoskeleton	protein binding|structural molecule activity			NS(1)|autonomic_ganglia(1)|breast(1)|central_nervous_system(5)|cervix(1)|endometrium(8)|kidney(4)|large_intestine(2)|lung(30)|ovary(2)|pancreas(1)|prostate(10)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	71	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCGACAGCAGCTTCTCCTGGA	0.701000													10	137					3.86212e-05	4.56432e-05	1	1	0
GPR132	29933	broad.mit.edu	37	14	105518396	105518396	+	Silent	SNP	C	C	T			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr14:105518396C>T	ENST00000329797.3	-	4	989	c.78G>A	c.(76-78)ctG>ctA	p.L26L	GPR132_ENST00000546679.1_5'UTR|GPR132_ENST00000392585.2_Silent_p.L17L|GPR132_ENST00000539291.2_Silent_p.L26L	NM_013345.2	NP_037477.1	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	26					response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(7)|ovary(3)|stomach(1)|upper_aerodigestive_tract(1)	18		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		CGGAGAGGCCCAGGGAGGCCC	0.642000													21	37					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66058449	66058449	+	Missense_Mutation	SNP	A	A	G			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr1:66058449A>G	ENST00000349533.6	+	6	789	c.604A>G	c.(604-606)Aca>Gca	p.T202A	LEPR_ENST00000371060.3_Missense_Mutation_p.T202A|LEPR_ENST00000462765.1_3'UTR|LEPR_ENST00000344610.8_Missense_Mutation_p.T202A|LEPR_ENST00000406510.3_Intron|LEPR_ENST00000371058.1_Missense_Mutation_p.T202A|LEPR_ENST00000371059.3_Missense_Mutation_p.T202A	NM_002303.5	NP_002294.2	P48357	LEPR_HUMAN	leptin receptor	202					energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(7)|lung(22)|skin(2)	36				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		GCCTGTGCCAACAGCCAAACT	0.428000													19	28					0	0	1	0	0
RP11-798G7.5	0	broad.mit.edu	37	17	43587576	43587576	+	RNA	SNP	A	A	G	rs145439557	by1000genomes	TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr17:43587576A>G	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							tctgaaaagaaaagaaaaaaa	0.428000													5	36					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330357	125330357	+	Missense_Mutation	SNP	C	C	T			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr9:125330357C>T	ENST00000304865.2	-	1	481	c.400G>A	c.(400-402)Gtc>Atc	p.V134I		NM_001004454.1	NP_001004454.1	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L, member 8	134					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(5)|lung(6)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	20						ATGGTGGTGACATAGTGGAAA	0.537000													11	35					0	0	1	0	0
AQP9	366	broad.mit.edu	37	15	58476192	58476192	+	Missense_Mutation	SNP	T	T	A			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr15:58476192T>A	ENST00000219919.4	+	6	1116	c.746T>A	c.(745-747)gTg>gAg	p.V249E	AQP9_ENST00000536493.1_Missense_Mutation_p.V249E|AQP9_ENST00000558772.1_Missense_Mutation_p.V184E|ALDH1A2_ENST00000558231.1_Intron	NM_020980.3	NP_066190.2	O43315	AQP9_HUMAN	aquaporin 9	249					cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			endometrium(1)|kidney(1)|large_intestine(7)|lung(10)|ovary(1)|prostate(1)	21				GBM - Glioblastoma multiforme(80;0.16)		ATTCCTGTAGTGGGCCCTTTG	0.428000													47	60					0	0	1	0	0
RP11-586K2.1	0	broad.mit.edu	37	8	89498121	89498122	+	RNA	INS	-	-	A			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr8:89498121_89498122insA	ENST00000521433.1	+	0	179				RP11-586K2.1_ENST00000523254.1_RNA																							gaacagctatgaaaaaaaaaac	0.386													2	4	---	---	---	---					
TPTE2P1	0	broad.mit.edu	37	13	25527490	25527491	+	RNA	INS	-	-	AAAAAG			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr13:25527490_25527491insAAAAAG	ENST00000429698.1	-	0	282																											AGGAAGGTTCTAAAAAAAATTT	0.252													3	5	---	---	---	---					
AC068831.10	0	broad.mit.edu	37	15	91577398	91577398	+	RNA	DEL	G	G	-	rs71463787		TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr15:91577398delG	ENST00000557804.1	+	0	465																											TCCTGCTGCCGGTTCAGGTGA	0.627													2	4	---	---	---	---					
RP1-37N7.4	0	broad.mit.edu	37	17	18334142	18334142	+	RNA	DEL	T	T	-			TCGA-DJ-A3V3-01A-11D-A22Z-08	TCGA-DJ-A3V3-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d012ddd7-fcd6-4551-b1b1-d80ee5909894	05824ae9-7726-4f77-bd87-857be39089f3	g.chr17:18334142delT	ENST00000580052.1	+	0	43																											TTGGCAGGGGTGGGGCTCTCA	0.562													2	4	---	---	---	---					
