Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DNAJC5G	285126	broad.mit.edu	37	2	27501192	27501192	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr2:27501192C>T	ENST00000406962.1	+	3	415	c.250C>T	c.(250-252)Caa>Taa	p.Q84*	DNAJC5G_ENST00000402462.1_Missense_Mutation_p.P171L|DNAJC5G_ENST00000296097.3_Missense_Mutation_p.P171L|DNAJC5G_ENST00000404433.1_Missense_Mutation_p.P155L			Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5 gamma	0	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding			cervix(1)|large_intestine(2)|lung(5)|skin(1)|urinary_tract(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGTCAGCCTCCAAGGTCAGGT	0.478000													13	19					0	0	1	0	0
RP11-464F9.1	0	broad.mit.edu	37	10	75487081	75487081	+	RNA	SNP	C	C	T	rs7099599	by1000genomes	TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr10:75487081C>T	ENST00000399449.3	-	0	396				BMS1P4_ENST00000584747.1_RNA|RP11-574K11.28_ENST00000580790.1_RNA																							CCTCTGATCTCGGTCAACTTC	0.517000													5	112					0	0	1	0	0
KLHDC2	23588	broad.mit.edu	37	14	50244662	50244662	+	Missense_Mutation	SNP	T	T	C	rs148686027	by1000genomes	TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr14:50244662T>C	ENST00000298307.5	+	4	1318	c.457T>C	c.(457-459)Tat>Cat	p.Y153H	KLHDC2_ENST00000553538.1_3'UTR|KLHDC2_ENST00000557247.1_Missense_Mutation_p.Y153H|KLHDC2_ENST00000554589.1_Missense_Mutation_p.Y153H	NM_014315.2	NP_055130.1	Q9Y2U9	KLDC2_HUMAN	kelch domain containing 2	153						nucleus	protein binding			endometrium(3)|large_intestine(3)|lung(5)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	16	all_epithelial(31;0.000959)|Breast(41;0.0117)					TGTCTGGGTATATAAAAACAA	0.403000													5	53					0	0	1	0	0
MFSD4	148808	broad.mit.edu	37	1	205554106	205554106	+	Missense_Mutation	SNP	C	C	T			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr1:205554106C>T	ENST00000367147.4	+	5	1055	c.962C>T	c.(961-963)aCg>aTg	p.T321M	MFSD4_ENST00000536357.1_Missense_Mutation_p.T234M|MFSD4_ENST00000539267.1_Missense_Mutation_p.T321M	NM_181644.4	NP_857595.3	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing 4	321					transmembrane transport	integral to membrane				central_nervous_system(1)|endometrium(2)|large_intestine(3)|lung(2)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	16	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			CTGTTCATGACGGATGGGTTG	0.587000											OREG0014158	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	64					0	0	1	0	0
RP11-85K15.2	0	broad.mit.edu	37	14	35409214	35409214	+	RNA	SNP	T	T	C	rs1967723	by1000genomes	TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr14:35409214T>C	ENST00000556355.1	-	0	257				RP11-85K15.2_ENST00000555015.1_RNA																							CAACTTCTAATTCATCTCGCC	0.448000													4	65					0	0	1	0	0
REST	5978	broad.mit.edu	37	4	57797761	57797761	+	Missense_Mutation	SNP	A	A	G			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr4:57797761A>G	ENST00000309042.7	+	4	3051	c.2737A>G	c.(2737-2739)Atc>Gtc	p.I913V		NM_001193508.1|NM_005612.4	NP_001180437.1|NP_005603.3	Q13127	REST_HUMAN	RE1-silencing transcription factor	913					cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			central_nervous_system(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|liver(2)|lung(22)|ovary(1)|prostate(2)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)	50	Glioma(25;0.08)|all_neural(26;0.181)					TGCTGCTAATATCAACGAATC	0.413000													23	47					0	0	1	0	0
CSDE1	7812	broad.mit.edu	37	1	115276367	115276367	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr1:115276367G>A	ENST00000438362.2	-	9	1339	c.961C>T	c.(961-963)Ccc>Tcc	p.P321S	CSDE1_ENST00000358528.4_Missense_Mutation_p.P275S|CSDE1_ENST00000261443.5_Missense_Mutation_p.P244S|CSDE1_ENST00000534699.1_Missense_Mutation_p.P275S|CSDE1_ENST00000369530.1_Missense_Mutation_p.P290S|CSDE1_ENST00000530886.1_Missense_Mutation_p.P145S|CSDE1_ENST00000339438.6_Missense_Mutation_p.P244S	NM_001242891.1	NP_001229820.1	O75534	CSDE1_HUMAN	cold shock domain containing E1, RNA-binding	275	CSD 4; truncated.				male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			NS(1)|breast(4)|endometrium(11)|kidney(2)|large_intestine(12)|lung(17)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	51	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTTTACTGGGTACTTTTGGG	0.348000													11	18					0	0	1	0	0
CSDE1	7812	broad.mit.edu	37	1	115276368	115276368	+	Silent	SNP	T	T	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr1:115276368T>A	ENST00000438362.2	-	9	1338	c.960A>T	c.(958-960)gtA>gtT	p.V320V	CSDE1_ENST00000358528.4_Silent_p.V274V|CSDE1_ENST00000261443.5_Silent_p.V243V|CSDE1_ENST00000534699.1_Silent_p.V274V|CSDE1_ENST00000369530.1_Silent_p.V289V|CSDE1_ENST00000530886.1_Silent_p.V144V|CSDE1_ENST00000339438.6_Silent_p.V243V	NM_001242891.1	NP_001229820.1	O75534	CSDE1_HUMAN	cold shock domain containing E1, RNA-binding	274	CSD 4; truncated.				male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			NS(1)|breast(4)|endometrium(11)|kidney(2)|large_intestine(12)|lung(17)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	51	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTTACTGGGTACTTTTGGGA	0.343000													11	17					0	0	1	0	0
PGM5	5239	broad.mit.edu	37	9	71098922	71098922	+	Silent	SNP	T	T	C			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr9:71098922T>C	ENST00000396396.1	+	9	1666	c.1437T>C	c.(1435-1437)ttT>ttC	p.F479F		NM_021965.3	NP_068800.2	Q15124	PGM5_HUMAN	phosphoglucomutase 5	479					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			endometrium(5)|kidney(1)|large_intestine(5)|liver(2)|lung(15)|ovary(1)|pancreas(1)|prostate(3)|skin(1)	34						CGGATAGTTTTGAATACGTGG	0.517000													4	91					0	0	1	0	0
FOXK2	3607	broad.mit.edu	37	17	80529730	80529730	+	Missense_Mutation	SNP	C	C	T			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr17:80529730C>T	ENST00000335255.5	+	4	1067	c.893C>T	c.(892-894)gCg>gTg	p.A298V		NM_004514.3	NP_004505.2	Q01167	FOXK2_HUMAN	forkhead box K2	298					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			NS(1)|breast(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(5)|prostate(1)|urinary_tract(1)	17	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			TACAGGACTGCGGACAAGGGC	0.488000													13	23					0	0	1	0	0
SPATA31A6	389730	broad.mit.edu	37	9	43627394	43627394	+	Silent	SNP	G	G	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr9:43627394G>A	ENST00000332857.6	-	4	1321	c.1293C>T	c.(1291-1293)gcC>gcT	p.A431A		NM_001145196.1	NP_001138668.1			SPATA31 subfamily A, member 6									p.A431A(1)									CAGTTACCCAGGCGTTAGCCA	0.488000													6	149					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42799804	42799804	+	Missense_Mutation	SNP	G	G	A	rs113601691		TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr3:42799804G>A	ENST00000310232.6	-	2	117	c.34C>T	c.(34-36)Cgg>Tgg	p.R12W	CCDC13_ENST00000435327.2_5'UTR	NM_144719.3	NP_653320.3	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	12										endometrium(1)|kidney(1)|large_intestine(5)|liver(1)|lung(11)|ovary(1)|prostate(3)|skin(1)|urinary_tract(1)	25						AACTGGAGCCGCAAAGTGTTC	0.507000													3	49					0	0	1	0	0
STEAP3	55240	broad.mit.edu	37	2	120003514	120003514	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr2:120003514G>A	ENST00000354888.5	+	3	946	c.442G>A	c.(442-444)Gtc>Atc	p.V148I	STEAP3_ENST00000393107.2_Missense_Mutation_p.V148I|STEAP3_ENST00000450943.2_Missense_Mutation_p.V148I|STEAP3_ENST00000409811.1_Missense_Mutation_p.V148I|STEAP3_ENST00000425223.2_Missense_Mutation_p.V148I|STEAP3_ENST00000393110.2_Missense_Mutation_p.V158I|STEAP3_ENST00000393108.2_Missense_Mutation_p.V148I|STEAP3-AS1_ENST00000454260.1_RNA|STEAP3_ENST00000393106.2_Missense_Mutation_p.V148I	NM_182915.2	NP_878919.2	Q658P3	STEA3_HUMAN	STEAP family member 3, metalloreductase	148					apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			breast(1)|central_nervous_system(2)|endometrium(6)|kidney(1)|large_intestine(2)|lung(4)|skin(1)	17						GGCCTTCAATGTCATCTCTGC	0.522000													30	61					0	0	1	0	0
MTF2	22823	broad.mit.edu	37	1	93581066	93581066	+	Missense_Mutation	SNP	T	T	G			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr1:93581066T>G	ENST00000370298.4	+	6	812	c.523T>G	c.(523-525)Ttg>Gtg	p.L175V	MTF2_ENST00000471953.1_3'UTR|MTF2_ENST00000545708.1_Missense_Mutation_p.L73V|MTF2_ENST00000370303.4_Missense_Mutation_p.L175V|MTF2_ENST00000540243.1_Missense_Mutation_p.L73V	NM_001164392.1|NM_007358.3	NP_001157864.1|NP_031384.1	Q9Y483	MTF2_HUMAN	metal response element binding transcription factor 2	175						nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(5)|lung(6)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	19		all_lung(203;0.00196)|Lung NSC(277;0.00902)|Melanoma(281;0.099)|Ovarian(761;0.109)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00076)|GBM - Glioblastoma multiforme(16;0.00157)|Epithelial(280;0.0886)		TGCCAAAGCATTGCAAGTCAT	0.408000													12	33					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17565186	17565186	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr1:17565186G>A	ENST00000375471.4	+	13	1626	c.1534G>A	c.(1534-1536)Gag>Aag	p.E512K	PADI1_ENST00000536552.1_5'UTR|PADI1_ENST00000537499.1_Missense_Mutation_p.E69K|PADI1_ENST00000413717.2_Missense_Mutation_p.E69K	NM_013358.2	NP_037490.2	Q9ULC6	PADI1_HUMAN	peptidyl arginine deiminase, type I	512					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(14)|ovary(1)|prostate(4)|skin(1)|stomach(1)|urinary_tract(1)	28		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	GGGTTATGGGGAGGCAGCCCA	0.607000													7	6					0	0	1	0	0
TBCEL	219899	broad.mit.edu	37	11	120916496	120916496	+	Missense_Mutation	SNP	C	C	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr11:120916496C>A	ENST00000422003.2	+	2	285	c.97C>A	c.(97-99)Cat>Aat	p.H33N	TBCEL_ENST00000529397.1_Missense_Mutation_p.H33N	NM_152715.3	NP_689928.3	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	33						cytoplasm|cytoskeleton			TECTA/TBCEL(2)	endometrium(3)|kidney(1)|large_intestine(2)|lung(4)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	14		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		GATGGGAGTCCATGTCCCAGC	0.428000													8	46					7.48243e-07	7.86614e-07	1	1	0
GIMAP5	55340	broad.mit.edu	37	7	150439701	150439701	+	Silent	SNP	C	C	T			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr7:150439701C>T	ENST00000358647.3	+	3	841	c.474C>T	c.(472-474)ggC>ggT	p.G158G	GIMAP5_ENST00000479556.1_3'UTR	NM_018384.4	NP_060854.2			GTPase, IMAP family member 5											central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(8)|ovary(1)|prostate(1)|urinary_tract(2)	19			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACTTAGGGGGCCAGGCCCTGG	0.552000													49	82					0	0	1	0	0
SLC39A2	29986	broad.mit.edu	37	14	21469359	21469359	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr14:21469359G>A	ENST00000298681.4	+	4	708	c.551G>A	c.(550-552)gGg>gAg	p.G184E	SLC39A2_ENST00000554422.1_3'UTR	NM_014579.3	NP_055394.2	Q9NP94	S39A2_HUMAN	solute carrier family 39 (zinc transporter), member 2	184						cytoplasmic membrane-bounded vesicle|integral to plasma membrane	zinc ion transmembrane transporter activity			breast(2)|central_nervous_system(1)|large_intestine(4)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	14	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0187)		CTAGCTGTGGGGCTGCAGCCG	0.557000													31	52					0	0	1	0	0
NSD1	64324	broad.mit.edu	37	5	176721621	176721621	+	Missense_Mutation	SNP	C	C	T			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr5:176721621C>T	ENST00000439151.2	+	23	7297	c.7252C>T	c.(7252-7254)Ctc>Ttc	p.L2418F	NSD1_ENST00000361032.4_Missense_Mutation_p.L2315F|NSD1_ENST00000354179.4_Missense_Mutation_p.L2149F|NSD1_ENST00000347982.4_Missense_Mutation_p.L2149F	NM_022455.4	NP_071900.2	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2418	Pro-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(13)|large_intestine(18)|lung(24)|ovary(2)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(7)|urinary_tract(3)	96	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GTCCCAGAGACTCCCACCTCC	0.507000			T	NUP98	AML		Sotos Syndrome		Weaver syndrome;Sotos syndrome;Beckwith-Wiedemann syndrome	HNSCC(47;0.14)			8	79					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651553	121651553	+	Missense_Mutation	SNP	C	C	A			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr7:121651553C>A	ENST00000393386.2	+	12	2864	c.2453C>A	c.(2452-2454)cCt>cAt	p.P818H	PTPRZ1_ENST00000449182.1_Intron|PTPRZ1_ENST00000483028.1_Intron	NM_001206838.1|NM_002851.2	NP_001193767.1|NP_002842.2	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type, Z polypeptide 1	818					central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity	p.P818L(2)		NS(1)|breast(3)|central_nervous_system(4)|cervix(1)|endometrium(4)|kidney(12)|large_intestine(17)|liver(1)|lung(42)|ovary(4)|prostate(5)|skin(8)|upper_aerodigestive_tract(2)|urinary_tract(2)	106						GATGGTGCACCTTTGCTTCCA	0.458000													61	124					2.5401e-28	2.8147e-28	1	1	0
DMTN	2039	broad.mit.edu	37	8	21925135	21925135	+	Missense_Mutation	SNP	A	A	T			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr8:21925135A>T	ENST00000358242.3	+	4	684	c.191A>T	c.(190-192)tAc>tTc	p.Y64F	DMTN_ENST00000443491.2_Missense_Mutation_p.Y39F|DMTN_ENST00000517600.1_Missense_Mutation_p.Y39F|DMTN_ENST00000432128.1_Missense_Mutation_p.Y64F|DMTN_ENST00000523266.1_Missense_Mutation_p.Y64F|DMTN_ENST00000415253.1_Missense_Mutation_p.Y64F|DMTN_ENST00000381470.3_Missense_Mutation_p.Y64F|DMTN_ENST00000265800.5_Missense_Mutation_p.Y64F|DMTN_ENST00000519907.1_Missense_Mutation_p.Y64F|DMTN_ENST00000523782.2_Missense_Mutation_p.Y39F					dematin actin binding protein																		CTCATGATCTACGAGCCTCAC	0.637000													13	63					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20570580	20570580	+	Missense_Mutation	SNP	T	T	C			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr16:20570580T>C	ENST00000329697.6	-	3	535	c.367A>G	c.(367-369)Atc>Gtc	p.I123V	ACSM2B_ENST00000565232.1_Missense_Mutation_p.I123V|ACSM2B_ENST00000414188.2_Missense_Mutation_p.I123V|ACSM2B_ENST00000565322.1_Missense_Mutation_p.I44V|ACSM2B_ENST00000567001.1_Missense_Mutation_p.I123V	NM_001105069.1	NP_001098539.1	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member 2B	123					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			breast(4)|central_nervous_system(2)|endometrium(5)|kidney(2)|large_intestine(4)|lung(33)|ovary(1)|prostate(1)|skin(5)	57						CAGCCCAGGATCACCAGCCAC	0.577000													3	27					0	0	1	0	0
CPD	1362	broad.mit.edu	37	17	28712043	28712043	+	Silent	SNP	G	G	T			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr17:28712043G>T	ENST00000225719.4	+	2	859	c.783G>T	c.(781-783)gtG>gtT	p.V261V	CPD_ENST00000543464.2_Silent_p.V14V	NM_001304.4	NP_001295.2	O75976	CBPD_HUMAN	carboxypeptidase D	261	Carboxypeptidase-like 1.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(9)|liver(1)|lung(13)|skin(5)|stomach(1)|urinary_tract(1)	36						GTGGCTCAGTGGTAGCAAGCT	0.368000													40	152					7.63091e-17	8.23335e-17	1	1	0
PRPF38B	55119	broad.mit.edu	37	1	109242566	109242580	+	In_Frame_Del	DEL	ATGATCGTCGAAGGA	ATGATCGTCGAAGGA	-	rs140893827		TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr1:109242566_109242580delATGATCGTCGAAGGA	ENST00000370021.1	+	7	1869_1883	c.1232_1246delATGATCGTCGAAGGA	c.(1231-1248)cgc>c	p.HDRRRS411del	PRPF38B_ENST00000370025.4_In_Frame_Del_p.HDRRRS522del			Q5VTL8	PR38B_HUMAN	pre-mRNA processing factor 38B	522	Arg-rich.				mRNA processing|RNA splicing	spliceosomal complex				NS(1)|kidney(3)|large_intestine(5)|lung(8)|prostate(1)|skin(1)	19		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0149)|Lung(183;0.0888)|COAD - Colon adenocarcinoma(174;0.113)|Epithelial(280;0.161)		TCAGACAAACATGATCGTCGAAGGAGCCAAAGTAT	0.377													7	151	---	---	---	---					
AC027612.3	0	broad.mit.edu	37	2	91899626	91899626	+	RNA	DEL	A	A	-			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr2:91899626delA	ENST00000436174.1	-	0	168																											CCAGAGGCTCAAAAAAAAAAA	0.289													5	7	---	---	---	---					
TNRC18	84629	broad.mit.edu	37	7	5434124	5434124	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr7:5434124delG	ENST00000399537.4	-	3	638	c.290delC	c.(289-291)cafs	p.P97fs	TNRC18_ENST00000399434.2_Frame_Shift_Del_p.P23fs|TNRC18_ENST00000430969.1_Frame_Shift_Del_p.P97fs			O15417	TNC18_HUMAN	trinucleotide repeat containing 18	97							DNA binding			central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(8)	11		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GCTAGGGGTTGGGGAGCGGAA	0.677													2	4	---	---	---	---					
SNORA26	0	broad.mit.edu	37	9	89875500	89875500	+	RNA	DEL	A	A	-	rs142686931		TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr9:89875500delA	ENST00000391119.1	+	0	136																											GAGCCACAGCaaaaaaaaaaa	0.363													3	6	---	---	---	---					
RP11-377D9.3	0	broad.mit.edu	37	12	13174141	13174142	+	RNA	INS	-	-	AAC	rs112328257	by1000genomes	TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr12:13174141_13174142insAAC	ENST00000543321.1	+	0	1025																											tctgtctcaaaaacaacaacaa	0.550													4	5	---	---	---	---					
NPIPB5	100132247	broad.mit.edu	37	16	22545540	22545558	+	Frame_Shift_Del	DEL	CGAGCGTCTGCGGGGGCCG	CGAGCGTCTGCGGGGGCCG	-			TCGA-DJ-A4UQ-01A-11D-A257-08	TCGA-DJ-A4UQ-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	076a1f31-3612-4a04-9def-a013b04ba13c	0c59ca72-7df5-4854-883a-7b204a87f2f0	g.chr16:22545540_22545558delCGAGCGTCTGCGGGGGCCG	ENST00000424340.1	+	7	1515_1533	c.1236_1254delCGAGCGTCTGCGGGGGCCG	c.(1234-1254)gcfs	p.AERLRGP412fs	NPIPB5_ENST00000517539.1_Frame_Shift_Del_p.AERLRGP412fs|NPIPB5_ENST00000415654.1_3'UTR	NM_001135865.1	NP_001129337.1			nuclear pore complex interacting protein family, member B5																		AGACACCTGCCGAGCGTCTGCGGGGGCCGCTTCCACCCT	0.562													4	8	---	---	---	---					
