Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DLGAP1	9229	broad.mit.edu	37	18	3879613	3879613	+	Silent	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr18:3879613C>T	ENST00000315677.3	-	4	1051	c.456G>A	c.(454-456)tcG>tcA	p.S152S	DLGAP1_ENST00000584874.1_Silent_p.S152S|DLGAP1_ENST00000581527.1_Silent_p.S152S|DLGAP1-AS3_ENST00000577649.1_RNA|DLGAP1_ENST00000515196.2_Silent_p.S152S	NM_004746.3	NP_004737.2	O14490	DLGP1_HUMAN	discs, large (Drosophila) homolog-associated protein 1	152					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				breast(2)|endometrium(3)|kidney(1)|large_intestine(5)|lung(31)|ovary(2)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(6)|urinary_tract(1)	56		Colorectal(8;0.0257)				CCAGGGAGTGCGACTTGGTGA	0.687000													4	181					0	0	1	0	0
BBS7	0	broad.mit.edu	37	4	122770040	122770040	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr4:122770040C>T	ENST00000264499.4	-	9	1076	c.893G>A	c.(892-894)gGa>gAa	p.G298E	BBS7_ENST00000506636.1_Missense_Mutation_p.G298E	NM_176824.2	NP_789794.1	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7	298					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(9)|lung(11)|ovary(2)|prostate(1)|skin(2)	30						GCTGTCTTTTCCTACACAACC	0.318000									Bardet-Biedl syndrome				26	58					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	G	C	rs145412486	by1000genomes	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr20:29628236G>C	ENST00000278882.3	+	6	618	c.238G>C	c.(238-240)Gct>Cct	p.A80P	FRG1B_ENST00000358464.4_Missense_Mutation_p.A80P|FRG1B_ENST00000439954.2_Missense_Mutation_p.A85P														p.A80P(8)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGGGAAAATGGCTTTGTTGGC	0.363000													10	221					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157665945	157665945	+	Silent	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr1:157665945C>T	ENST00000368184.3	-	7	1308	c.1017G>A	c.(1015-1017)ctG>ctA	p.L339L	FCRL3_ENST00000368186.5_Silent_p.L339L|FCRL3_ENST00000473231.1_5'UTR|RP11-367J7.3_ENST00000453692.1_RNA	NM_052939.3	NP_443171.2	Q96P31	FCRL3_HUMAN	Fc receptor-like 3	339	Ig-like C2-type 4.					integral to membrane|plasma membrane	receptor activity			autonomic_ganglia(1)|breast(3)|endometrium(7)|kidney(1)|large_intestine(13)|lung(31)|ovary(3)|prostate(3)|skin(5)|upper_aerodigestive_tract(2)	69	all_hematologic(112;0.0378)					GCTCTGCCAACAGGGAACGCT	0.522000													26	70					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119810267	119810267	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr4:119810267G>A	ENST00000307142.4	+	1	272	c.76G>A	c.(76-78)Gag>Aag	p.E26K	SYNPO2_ENST00000429713.2_Missense_Mutation_p.E26K|SYNPO2_ENST00000448416.2_Missense_Mutation_p.E26K|SYNPO2_ENST00000434046.2_Missense_Mutation_p.E26K	NM_133477.2	NP_597734.2	Q9UMS6	SYNP2_HUMAN	synaptopodin 2	26	PDZ.					nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			breast(3)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(20)|lung(18)|ovary(2)|prostate(3)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	64						AGGTGGCAAGGAGCAGAAGCA	0.517000													35	65					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11039406	11039406	+	RNA	SNP	T	T	C	rs8134740	by1000genomes	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr21:11039406T>C	ENST00000470054.1	-	0	797									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCATTAGAAATCTGTTTTTCC	0.299000													15	116					0	0	1	0	0
SDHAP3	0	broad.mit.edu	37	5	1593264	1593264	+	RNA	SNP	C	C	T	rs111700178	by1000genomes	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr5:1593264C>T	ENST00000436493.2	-	0	361																											AGGGCACATGCCTGACCAAAG	0.557000													4	57					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628278	29628278	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr20:29628278G>A	ENST00000278882.3	+	6	660	c.280G>A	c.(280-282)Gca>Aca	p.A94T	FRG1B_ENST00000358464.4_Missense_Mutation_p.A94T|FRG1B_ENST00000439954.2_Missense_Mutation_p.A99T																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGCAATGAAGCAGGGGACAT	0.373000													6	163					0	0	1	0	0
HLA-DRB6	0	broad.mit.edu	37	6	32522722	32522722	+	RNA	SNP	C	C	A	rs114905475	by1000genomes	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr6:32522722C>A	ENST00000411500.1	-	0	484					NR_001298.1																						TGGGTCTTTGCAGGATACACA	0.488000													3	30					0.00909568	0.00909568	1	1	0
PRAMEF2	65122	broad.mit.edu	37	1	12920020	12920020	+	Missense_Mutation	SNP	T	T	C	rs3204810		TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr1:12920020T>C	ENST00000240189.2	+	3	847	c.760T>C	c.(760-762)Tgg>Cgg	p.W254R		NM_023014.1	NP_075390.1	O60811	PRAM2_HUMAN	PRAME family member 2	254										breast(2)|endometrium(1)|kidney(2)|large_intestine(2)|lung(22)|prostate(6)|skin(3)|upper_aerodigestive_tract(4)	42	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACTCGAGGGATGGTTAGTCAC	0.438000													7	150					0	0	1	0	0
HELQ	113510	broad.mit.edu	37	4	84347206	84347206	+	Missense_Mutation	SNP	T	T	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr4:84347206T>A	ENST00000295488.3	-	14	2878	c.2716A>T	c.(2716-2718)Att>Ttt	p.I906F	HELQ_ENST00000510985.1_Missense_Mutation_p.I839F	NM_133636.2	NP_598375.2	Q8TDG4	HELQ_HUMAN	helicase, POLQ-like	906							ATP binding|ATP-dependent helicase activity|nucleic acid binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(10)|lung(17)|ovary(2)|skin(2)	38						ACTCCAAGAATGGCAGCTACA	0.388000								Other identified genes with known or suspected DNA repair function					12	154					0	0	1	0	0
PTK7	0	broad.mit.edu	37	6	43109515	43109515	+	Silent	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr6:43109515G>A	ENST00000230419.4	+	11	1949	c.1728G>A	c.(1726-1728)ccG>ccA	p.P576P	PTK7_ENST00000352931.2_Silent_p.P576P|PTK7_ENST00000481273.1_Silent_p.P584P|PTK7_ENST00000349241.2_Silent_p.P446P|PTK7_ENST00000345201.2_Silent_p.P536P	NM_002821.4	NP_002812.2	Q13308	PTK7_HUMAN	protein tyrosine kinase 7	576	Ig-like C2-type 6.				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			NS(1)|breast(4)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(12)|lung(12)|ovary(2)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	46			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			CCAACGGGCCGCAGGGCCAGA	0.652000													5	165					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	G	A	rs7266938	by1000genomes	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr20:29625877G>A	ENST00000278882.3	+	5	501	c.121G>A	c.(121-123)Gcc>Acc	p.A41T	FRG1B_ENST00000358464.4_Missense_Mutation_p.A41T|FRG1B_ENST00000439954.2_Missense_Mutation_p.A46T														p.A41T(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GTACAGAATCGCCCTGAAATC	0.358000													5	103					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr1:16918653C>T	ENST00000430580.2	-	6	853		c.e6+1			NM_017940.3	NP_060410.2	Q3BBV0	NBPF1_HUMAN	neuroblastoma breakpoint family, member 1							cytoplasm									UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													4	76					0	0	1	0	0
CKM	1158	broad.mit.edu	37	19	45810034	45810034	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr19:45810034C>T	ENST00000221476.3	-	8	1294	c.1120G>A	c.(1120-1122)Gac>Aac	p.D374N		NM_001824.4	NP_001815.2	P06732	KCRM_HUMAN	creatine kinase, muscle	374					creatine metabolic process	cytosol	ATP binding|creatine kinase activity			cervix(1)|endometrium(1)|large_intestine(8)|lung(3)|prostate(2)|skin(2)	17		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	ATCATGTCGTCAATGGACTGG	0.612000													6	249					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137623480	137623480	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr9:137623480C>T	ENST00000371817.3	+	8	1717	c.1303C>T	c.(1303-1305)Ccg>Tcg	p.P435S		NM_000093.3|NM_001278074.1	NP_000084.3|NP_001265003.1	P20908	CO5A1_HUMAN	collagen, type V, alpha 1	435	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			NS(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(26)|liver(2)|lung(36)|ovary(4)|pancreas(4)|prostate(5)|skin(10)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(4)	115		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GCCGGGAATGCCGGCGAACCA	0.647000													4	121					0	0	1	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59982897	59982897	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr5:59982897C>T	ENST00000265036.5	-	2	273	c.206G>A	c.(205-207)cGc>cAc	p.R69H	DEPDC1B_ENST00000453022.2_Missense_Mutation_p.R69H|DEPDC1B_ENST00000545085.1_Missense_Mutation_p.R42H	NM_018369.2	NP_060839.2	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B	69	DEP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(6)|ovary(1)|pancreas(2)|skin(2)	17		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				CGTTTGTTTGCGGGTCACTTC	0.473000													4	194					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G	rs10796418	by1000genomes	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr1:16946407T>G	ENST00000412962.1	-	0	1112																											AGCAATCTCCTCACTCAGCTG	0.672000													9	15					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129221571	129221571	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr3:129221571G>A	ENST00000296266.3	+	21	2738	c.2546G>A	c.(2545-2547)cGc>cAc	p.R849H	IFT122_ENST00000507564.1_Missense_Mutation_p.R790H|IFT122_ENST00000347300.2_Missense_Mutation_p.R739H|IFT122_ENST00000513932.1_3'UTR|IFT122_ENST00000440957.2_Missense_Mutation_p.R589H|IFT122_ENST00000504021.1_Missense_Mutation_p.R674H|IFT122_ENST00000431818.2_Missense_Mutation_p.R648H|IFT122_ENST00000348417.2_Missense_Mutation_p.R798H|IFT122_ENST00000349441.2_Missense_Mutation_p.R687H	NM_052985.2	NP_443711.2	Q9HBG6	IF122_HUMAN	intraflagellar transport 122 homolog (Chlamydomonas)	798					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				breast(3)|cervix(1)|endometrium(9)|large_intestine(10)|lung(21)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	52						GACATCGCCCGCAAACTGGAC	0.597000													4	172					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	65005558	65005558	+	Silent	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr16:65005558G>A	ENST00000394156.3	-	11	2019	c.1566C>T	c.(1564-1566)gcC>gcT	p.A522A	CDH11_ENST00000566827.1_Silent_p.A396A|CDH11_ENST00000268603.4_Silent_p.A522A			P55287	CAD11_HUMAN	cadherin 11, type 2, OB-cadherin (osteoblast)	522	Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(5)|kidney(5)|large_intestine(19)|lung(40)|ovary(3)|prostate(3)|skin(2)|urinary_tract(2)	88		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TTGGTCCATTGGCCGTGTCAT	0.413000			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			4	60					0	0	1	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74904577	74904577	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr11:74904577G>A	ENST00000289575.5	+	9	1785	c.1390G>A	c.(1390-1392)Ggc>Agc	p.G464S	SLCO2B1_ENST00000531756.1_Missense_Mutation_p.G209S|SLCO2B1_ENST00000532236.1_Missense_Mutation_p.G348S|SLCO2B1_ENST00000525650.1_Missense_Mutation_p.G320S|SLCO2B1_ENST00000428359.2_Missense_Mutation_p.G442S|SLCO2B1_ENST00000454962.2_Missense_Mutation_p.G237S|SLCO2B1_ENST00000341411.4_Missense_Mutation_p.G237S	NM_007256.4	NP_009187.1	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family, member 2B1	464					sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity	p.G464S(1)		breast(2)|endometrium(1)|large_intestine(7)|lung(20)|ovary(3)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	39					Ergoloid mesylate(DB01049)	CTTCTTTATCGGCTGCTCCAG	0.627000													10	17					0	0	1	0	0
PIK3R5	23533	broad.mit.edu	37	17	8791970	8791970	+	Silent	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr17:8791970G>A	ENST00000447110.1	-	10	1258	c.1134C>T	c.(1132-1134)tcC>tcT	p.S378S	PIK3R5_ENST00000581552.1_Silent_p.S378S|PIK3R5_ENST00000584803.1_Silent_p.S378S	NM_001142633.2|NM_001251851.1|NM_001251852.1|NM_001251853.1|NM_001251855.1	NP_001136105.1|NP_001238780.1|NP_001238781.1|NP_001238782.1|NP_001238784.1	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	378					platelet activation	cytosol|membrane|nucleus				breast(2)|central_nervous_system(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(14)|prostate(3)|skin(4)|urinary_tract(1)	34						CTGAGACAAAGGAAGTCAGCA	0.652000													10	34					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	A	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr20:29625941A>T	ENST00000278882.3	+	5	565	c.185A>T	c.(184-186)gAt>gTt	p.D62V	FRG1B_ENST00000358464.4_Missense_Mutation_p.D62V|FRG1B_ENST00000439954.2_Missense_Mutation_p.D67V														p.D62V(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGGCATTCAGATGCAATTGGA	0.333000													8	101					0	0	1	0	0
ANO8	57719	broad.mit.edu	37	19	17441651	17441651	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr19:17441651G>A	ENST00000159087.4	-	8	1137	c.979C>T	c.(979-981)Cgc>Tgc	p.R327C		NM_020959.2	NP_066010.1	Q9HCE9	ANO8_HUMAN	anoctamin 8	327						chloride channel complex	chloride channel activity			autonomic_ganglia(2)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(2)|lung(7)|ovary(4)|pancreas(1)|prostate(2)|urinary_tract(3)	27						AACTGGGGGCGTGGCTCCTCC	0.612000													69	131					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81110848	81110848	+	Silent	SNP	C	C	T			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr12:81110848C>T	ENST00000228644.3	+	1	158	c.6C>T	c.(4-6)gaC>gaT	p.D2D		NM_005593.2	NP_005584.2	P13349	MYF5_HUMAN	myogenic factor 5	2					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			central_nervous_system(1)|cervix(1)|endometrium(2)|large_intestine(8)|lung(15)|ovary(2)|pancreas(1)	30						GCAGGATGGACGTGATGGATG	0.642000													8	49					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100678988	100678988	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr7:100678988G>A	ENST00000306151.4	+	3	4355	c.4291G>A	c.(4291-4293)Gct>Act	p.A1431T		NM_001040105.1	NP_001035194.1	Q685J3	MUC17_HUMAN	mucin 17, cell surface associated	1431	59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity	p.A1431T(1)		NS(3)|breast(14)|central_nervous_system(2)|cervix(2)|endometrium(27)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(28)|lung(179)|ovary(19)|pancreas(1)|prostate(13)|skin(26)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(4)	343	Lung NSC(181;0.136)|all_lung(186;0.182)					GACCACTTCTGCTGAAGCCAC	0.488000													8	580					0	0	1	0	0
RP11-423O2.5	0	broad.mit.edu	37	1	142803581	142803581	+	RNA	DEL	A	A	-	rs145354541		TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr1:142803581delA	ENST00000423385.1	-	0	1384																											TCATAGATTTAAAAAATTATG	0.274													8	167	---	---	---	---					
RPTN	126638	broad.mit.edu	37	1	152127881	152127884	+	Frame_Shift_Del	DEL	TGTC	TGTC	-			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr1:152127881_152127884delTGTC	ENST00000316073.3	-	3	1755_1758	c.1691_1694delGACA	c.(1690-1695)aafs	p.RQ564fs		NM_001122965.1	NP_001116437.1	Q6XPR3	RPTN_HUMAN	repetin	564	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding			breast(2)|central_nervous_system(1)|endometrium(14)|kidney(2)|large_intestine(1)|lung(32)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	59						GCTCTGGCCTTGTCTGTCTGTCTG	0.485													7	1101	---	---	---	---					
AC018730.1	0	broad.mit.edu	37	2	105440965	105440966	+	RNA	INS	-	-	TGG	rs150937258	by1000genomes	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr2:105440965_105440966insTGG	ENST00000458253.1	-	0	147				AC018730.1_ENST00000447876.1_RNA|AC018730.1_ENST00000454729.1_RNA|AC018730.1_ENST00000413121.1_RNA|AC018730.1_ENST00000443988.1_RNA																							gatggtggtgatggtggtggtg	0.569													2	4	---	---	---	---					
LINC00969	0	broad.mit.edu	37	3	195392917	195392917	+	RNA	DEL	T	T	-			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr3:195392917delT	ENST00000445430.1	+	0	647																											CTTCTTGCCCTTTTTTTTTCT	0.418													2	4	---	---	---	---					
MAML3	55534	broad.mit.edu	37	4	140811064	140811069	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71855026		TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr4:140811064_140811069delTGCTGC	ENST00000509479.2	-	2	2377_2382	c.1521_1526delGCAGCA	c.(1519-1527)caa>ca	p.QQQ507del	MAML3_ENST00000327122.5_In_Frame_Del_p.QQQ351del|MAML3_ENST00000398940.1_Splice_Site_p.37_splice	NM_018717.4	NP_061187.2	Q96JK9	MAML3_HUMAN	mastermind-like 3 (Drosophila)	506	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			breast(1)|endometrium(7)|kidney(2)|large_intestine(1)|lung(9)|ovary(1)|prostate(2)|urinary_tract(2)	25	all_hematologic(180;0.162)					TGAGtgctgttgctgctgctgctgct	0.515													17	126	---	---	---	---					
CAMSAP1	157922	broad.mit.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	-	T	rs148250832	byFrequency	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr9:138715799_138715800insT	ENST00000389532.4	-	10	1460_1461	c.1396_1397insA	c.(1396-1398)cagfs	p.Q466fs	CAMSAP1_ENST00000483991.1_5'UTR|CAMSAP1_ENST00000409386.3_Frame_Shift_Ins_p.Q477fs|CAMSAP1_ENST00000312405.6_Frame_Shift_Ins_p.Q188fs	NM_015447.3	NP_056262.3	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein 1	466						cytoplasm|microtubule				breast(3)|central_nervous_system(2)|endometrium(6)|kidney(4)|large_intestine(11)|lung(16)|ovary(3)|pancreas(1)|skin(1)	47				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GACTCACCTGGTTTTTTTTTCT	0.460													2	4	---	---	---	---					
NOLC1	9221	broad.mit.edu	37	10	103919000	103919002	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr10:103919000_103919002delAGC	ENST00000405356.1	+	6	893_895	c.658_660delAGC	c.(658-660)del	p.S227del	NOLC1_ENST00000605788.1_In_Frame_Del_p.S227del|NOLC1_ENST00000488254.2_In_Frame_Del_p.S228del|NOLC1_ENST00000603742.1_5'UTR			Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	227	11 X 12 AA approximate repeats of an acidic serine cluster.|Interacts with RPA194.				mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			breast(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(12)|ovary(1)|upper_aerodigestive_tract(1)	31		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		tagcagcagtagcagcagcagca	0.517													7	223	---	---	---	---					
C11orf35	256329	broad.mit.edu	37	11	555462	555462	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr11:555462delA	ENST00000329451.3	-	13	1678	c.1616delT	c.(1615-1617)tcfs	p.F539fs		NM_173573.2	NP_775844.2	Q8IXW0	CK035_HUMAN	chromosome 11 open reading frame 35	539	Pro-rich.									NS(1)|breast(1)|central_nervous_system(1)|lung(4)|pancreas(1)	8		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCGCGCGTGGAAGAGCTTCCC	0.781													2	4	---	---	---	---					
C17orf97	400566	broad.mit.edu	37	17	263586	263645	+	In_Frame_Del	DEL	GACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCCAAGGCCCTCAAGGGCTTCCACCCC	GACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCCAAGGCCCTCAAGGGCTTCCACCCC	-	rs71369083	byFrequency	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr17:263586_263645delGACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCCAAGGCCCTCAAGGGCTTCCACCCC	ENST00000360127.6	+	2	968_1027	c.952_1011delGACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCCAAGGCCCTCAAGGGCTTCCACCCC	c.(952-1011)del	p.DPEALKGFHPDPKALKGFHP318del	C17orf97_ENST00000571106.1_Intron|AC108004.3_ENST00000466740.2_RNA	NM_001013672.4	NP_001013694.4	Q6ZQX7	CQ097_HUMAN	chromosome 17 open reading frame 97	348	20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.							p.G334G(4)|p.P327P(1)		breast(1)|kidney(2)|large_intestine(4)|lung(4)|ovary(1)|prostate(1)|skin(1)	14						TTTCCACACTGACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCCAAGGCCCTCAAGGGCTTCCACCCCGACCCCGAGG	0.681													24	79	---	---	---	---					
VEZF1	7716	broad.mit.edu	37	17	56056605	56056607	+	In_Frame_Del	DEL	TGC	TGC	-	rs61731354	byFrequency	TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr17:56056605_56056607delTGC	ENST00000584396.1	-	5	1105_1107	c.1017_1019delGCA	c.(1015-1020)caa>ca	p.QQ343del	VEZF1_ENST00000581208.1_In_Frame_Del_p.QQ352del			Q14119	VEZF1_HUMAN	vascular endothelial zinc finger 1	352	Poly-Gln.				cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(1)|kidney(2)|lung(5)|ovary(1)	10						ttgttgttgttgctgctgctgct	0.463													8	209	---	---	---	---					
CTC-559E9.6	0	broad.mit.edu	37	19	19944259	19944260	+	RNA	DEL	GT	GT	-			TCGA-E8-A438-01A-11D-A23U-08	TCGA-E8-A438-10B-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a4d31231-1d29-49cd-98d7-a658b3a6460f	01117f3f-623d-4fb0-b04f-0601015e88a3	g.chr19:19944259_19944260delGT	ENST00000591884.1	+	0	393																											TGGTAAAAACGTGTGTGTGTGT	0.426													9	161	---	---	---	---					
