Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CXCR2P1	0	broad.mit.edu	37	2	218925283	218925283	+	RNA	SNP	G	G	A	rs3181380	by1000genomes	TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr2:218925283G>A	ENST00000439871.1	-	0	1097					NR_002712.1																						TCGTTGCGGCGCTCACAGGTC	0.557000													3	34					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr20:29628245G>A	ENST00000278882.3	+	6	627	c.247G>A	c.(247-249)Gcc>Acc	p.A83T	FRG1B_ENST00000439954.2_Missense_Mutation_p.A88T|FRG1B_ENST00000358464.4_Missense_Mutation_p.A83T														p.A83T(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGCTTTGTTGGCCTCAAATAG	0.353000													5	139					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr18:14513764C>T	ENST00000358970.5	-	10	1429	c.1430G>A	c.(1429-1431)cGg>cAg	p.R477Q		NM_001137671.1	NP_001131143.1	B2RU33	POTEC_HUMAN	POTE ankyrin domain family, member C	477								p.R477Q(12)		NS(2)|breast(1)|endometrium(9)|kidney(13)|lung(14)|prostate(3)|skin(6)|soft_tissue(1)|urinary_tract(3)	52						AAGTTGTTTCCGGGTATCATT	0.358000													3	35					0	0	1	0	0
ZNF761	388561	broad.mit.edu	37	19	53945909	53945909	+	RNA	SNP	T	T	C	rs28727441	by1000genomes	TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr19:53945909T>C	ENST00000454407.1	+	0	55				TPM3P9_ENST00000424846.3_RNA			Q86XN6	ZN761_HUMAN	zinc finger protein 761						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|kidney(2)|large_intestine(5)|lung(13)|ovary(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	30				GBM - Glioblastoma multiforme(134;0.00786)		ACCCTGACTCTGCCTGAGGCC	0.562000													4	37					0	0	1	0	0
RP11-85G18.6	0	broad.mit.edu	37	10	27538569	27538569	+	RNA	SNP	G	G	A	rs11015624	by1000genomes	TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr10:27538569G>A	ENST00000574842.1	+	0	255				LRRC37A6P_ENST00000284414.4_RNA																							CAGGTCCAAAGGTTGAACTGT	0.478000													7	162					0	0	1	0	0
RP11-85G18.6	0	broad.mit.edu	37	10	27539638	27539638	+	RNA	SNP	T	T	C			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr10:27539638T>C	ENST00000574842.1	+	0	907																											TCCGAAGTTATGGTAACCTCC	0.473000													27	125					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6309777	6309777	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr19:6309777G>A	ENST00000301452.4	-	4	496	c.419C>T	c.(418-420)aCg>aTg	p.T140M		NM_133492.2	NP_597999.1	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	140						endoplasmic reticulum membrane|integral to membrane	ceramidase activity			NS(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(4)|pancreas(1)	15						GGCGTTGACCGTGGGCCGCAG	0.607000													4	59					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325517	150325517	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr7:150325517C>A	ENST00000328902.5	-	3	385	c.169G>T	c.(169-171)Gga>Tga	p.G57*	GIMAP6_ENST00000493969.1_Intron	NM_001244072.1|NM_024711.5	NP_001231001.1|NP_078987.3	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	57							GTP binding			endometrium(4)|kidney(1)|large_intestine(6)|lung(11)|ovary(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	29			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATGCTGTTTCCTGTTGCACTC	0.537000													53	235					9.72345e-25	1.01286e-24	1	1	0
FRG1B	0	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	T	C			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr20:29628243T>C	ENST00000278882.3	+	6	625	c.245T>C	c.(244-246)tTg>tCg	p.L82S	FRG1B_ENST00000439954.2_Missense_Mutation_p.L87S|FRG1B_ENST00000358464.4_Missense_Mutation_p.L82S														p.L82S(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGGCTTTGTTGGCCTCAAAT	0.363000													5	140					0	0	1	0	0
IGKV1D-12	0	broad.mit.edu	37	2	90198906	90198906	+	RNA	SNP	G	G	A			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr2:90198906G>A	ENST00000390276.2	+	0	248																											TTCCAGATGCGACATCCAGAT	0.458000													7	104					0	0	1	0	0
PCDHB18	0	broad.mit.edu	37	5	140615861	140615861	+	RNA	SNP	G	G	A	rs6871453	by1000genomes	TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr5:140615861G>A	ENST00000526308.1	+	0	1924					NR_001281.1															endometrium(9)|lung(7)|ovary(1)|urinary_tract(1)	18						GGTACCTCGGGCGGCCGAGCC	0.701000													5	101					0	0	1	0	0
PCYOX1L	78991	broad.mit.edu	37	5	148743769	148743769	+	Missense_Mutation	SNP	A	A	G			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr5:148743769A>G	ENST00000514349.1	+	2	775	c.196A>G	c.(196-198)Atg>Gtg	p.M66V	PCYOX1L_ENST00000274569.4_Missense_Mutation_p.M156V			Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like	156					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			breast(2)|kidney(1)|large_intestine(2)|lung(2)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGAAGTTCATGAGGTAGGG	0.567000													4	18					0	0	1	0	0
THAP4	51078	broad.mit.edu	37	2	242572861	242572861	+	Silent	SNP	C	C	T			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr2:242572861C>T	ENST00000407315.1	-	2	1142	c.711G>A	c.(709-711)tcG>tcA	p.S237S		NM_015963.5	NP_057047.4	Q8WY91	THAP4_HUMAN	THAP domain containing 4	237							DNA binding|metal ion binding			kidney(1)|large_intestine(3)|lung(2)|ovary(2)|prostate(1)	9		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		AGAAACTGTACGAATGAAGTG	0.532000													3	49					0	0	1	0	0
RP11-782C8.2	0	broad.mit.edu	37	1	143210446	143210446	+	RNA	DEL	T	T	-			TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr1:143210446delT	ENST00000412204.2	-	0	624				RP11-782C8.1_ENST00000438000.1_lincRNA																							GTCCATATACTAAAAAGGTTA	0.284													3	6	---	---	---	---					
RP11-597A11.1	0	broad.mit.edu	37	14	20138373	20138374	+	RNA	INS	-	-	AAG	rs150133272		TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr14:20138373_20138374insAAG	ENST00000548261.1	+	0	391																											GAAACAaaagaaagaaagaaag	0.396													3	5	---	---	---	---					
CYP2D7P1	0	broad.mit.edu	37	22	42537119	42537120	+	RNA	INS	-	-	A	rs142656198	by1000genomes	TCGA-E8-A44M-01A-21D-A23U-08	TCGA-E8-A44M-10A-01D-A23U-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	80ddf79b-b624-4341-8727-e72326c80f3d	ad3886e5-6597-41a8-a0b8-533186183119	g.chr22:42537119_42537120insA	ENST00000435101.1	-	0	296				CYP2D7P1_ENST00000358097.4_RNA|CYP2D7P1_ENST00000433992.1_RNA																endometrium(1)	1						GGGCTACCACCGGGGCTGATGC	0.614													3	6	---	---	---	---					
