Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr1:16918653C>T	ENST00000430580.2	-	6	853		c.e6+1			NM_017940.3	NP_060410.2	Q3BBV0	NBPF1_HUMAN	neuroblastoma breakpoint family, member 1							cytoplasm									UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													4	49					0	0	1	0	0
BFAR	51283	broad.mit.edu	37	16	14761536	14761536	+	Missense_Mutation	SNP	C	C	T			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr16:14761536C>T	ENST00000261658.2	+	8	1482	c.1205C>T	c.(1204-1206)aCg>aTg	p.T402M	BFAR_ENST00000426842.2_Missense_Mutation_p.T274M|BFAR_ENST00000563971.1_Missense_Mutation_p.T277M|BFAR_ENST00000563082.1_3'UTR	NM_016561.2	NP_057645.1	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	402					anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(2)|lung(1)|ovary(2)|skin(1)	11						AAAGTATCAACGCAGGGGCTT	0.488000													49	100					0	0	1	0	0
ACTL6B	51412	broad.mit.edu	37	7	100244387	100244387	+	Missense_Mutation	SNP	A	A	G			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr7:100244387A>G	ENST00000160382.5	-	11	1110	c.1004T>C	c.(1003-1005)aTt>aCt	p.I335T		NM_016188.4	NP_057272.1	O94805	ACL6B_HUMAN	actin-like 6B	335					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			endometrium(1)|large_intestine(3)|lung(7)|ovary(1)|skin(1)	13	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GCGAATATCAATGTCACACAT	0.667000													5	49					0	0	1	0	0
SLC27A3	11000	broad.mit.edu	37	1	153750999	153750999	+	Missense_Mutation	SNP	C	C	G			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr1:153750999C>G	ENST00000271857.2	+	6	2561	c.1801C>G	c.(1801-1803)Ccc>Gcc	p.P601A	SLC27A3_ENST00000484014.1_3'UTR|SLC27A3_ENST00000368661.3_Missense_Mutation_p.P520A			Q5K4L6	S27A3_HUMAN	solute carrier family 27 (fatty acid transporter), member 3	520					fatty acid metabolic process	integral to membrane|mitochondrial membrane	ligase activity|nucleotide binding			NS(1)|endometrium(1)|large_intestine(3)|lung(7)|ovary(1)|prostate(1)	14	all_lung(78;6.47e-32)|Lung NSC(65;2.52e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AATTCGGGACCCCCAGGGGCA	0.577000													8	104					0	0	1	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130846180	130846180	+	Missense_Mutation	SNP	G	G	A			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr5:130846180G>A	ENST00000509018.1	-	8	837	c.632C>T	c.(631-633)aCg>aTg	p.T211M	RAPGEF6_ENST00000308008.6_Missense_Mutation_p.T211M|RAPGEF6_ENST00000510071.1_Missense_Mutation_p.T211M|FNIP1_ENST00000514667.1_Missense_Mutation_p.T261M|RAPGEF6_ENST00000296859.6_Missense_Mutation_p.T211M|RAPGEF6_ENST00000507093.1_Missense_Mutation_p.T211M|RAPGEF6_ENST00000307984.5_Missense_Mutation_p.T211M	NM_001164386.1|NM_016340.5	NP_001157858.1|NP_057424.3	Q8TEU7	RPGF6_HUMAN	Rap guanine nucleotide exchange factor (GEF) 6	211					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(7)|lung(10)|ovary(3)|skin(1)|stomach(1)	31			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		CTCACTCTCCGTAGCCTATGA	0.368000													6	75					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32163439	32163439	+	Silent	SNP	T	T	A			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr6:32163439T>A	ENST00000375023.3	-	30	5925	c.5787A>T	c.(5785-5787)atA>atT	p.I1929I	NOTCH4_ENST00000443903.2_3'UTR	NM_004557.3	NP_004548.3	Q99466	NOTC4_HUMAN	notch 4	1929					cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(4)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|lung(47)|ovary(5)|prostate(4)|skin(10)|upper_aerodigestive_tract(1)|urinary_tract(1)	100						TTCCTCGCATTATCGCAGGGT	0.667000													11	89					0	0	1	0	0
RP11-472B18.1	0	broad.mit.edu	37	4	39483038	39483038	+	RNA	SNP	C	C	T	rs16995316	by1000genomes	TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr4:39483038C>T	ENST00000513652.1	+	0	1045																											TCACCTCTGCCGCGCTAGAAA	0.453000													5	55					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113374352	113374352	+	Silent	SNP	T	T	C			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr3:113374352T>C	ENST00000316407.4	-	7	6587	c.6177A>G	c.(6175-6177)ctA>ctG	p.L2059L	KIAA2018_ENST00000491165.1_Intron|KIAA2018_ENST00000478658.1_Silent_p.L2059L	NM_001009899.2	NP_001009899.2	Q68DE3	K2018_HUMAN	KIAA2018	2059					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			NS(1)|breast(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(13)|liver(1)|lung(30)|ovary(8)|skin(5)|upper_aerodigestive_tract(4)|urinary_tract(2)	80						AATTTTGTGATAGTGTATGCT	0.418000													5	103					0	0	1	0	0
WASH3P	0	broad.mit.edu	37	15	102515257	102515257	+	RNA	SNP	C	C	T			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr15:102515257C>T	ENST00000557932.1	+	0	1103																				central_nervous_system(1)|endometrium(6)|kidney(11)|prostate(5)|stomach(1)|urinary_tract(1)	25						CTCCGGTGGCCGGGCCACTCT	0.647000													3	8					0	0	1	0	0
C2orf15	150590	broad.mit.edu	37	2	99767210	99767210	+	Silent	SNP	T	T	C			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr2:99767210T>C	ENST00000302513.2	+	4	927	c.291T>C	c.(289-291)acT>acC	p.T97T	TSGA10_ENST00000393483.3_Intron|C2orf15_ENST00000409684.1_Silent_p.T97T	NM_144706.2	NP_653307.1	Q8WU43	CB015_HUMAN	chromosome 2 open reading frame 15	97										autonomic_ganglia(1)|breast(1)|endometrium(1)|large_intestine(2)|lung(1)	6						TTGAAGGGACTGGCACAGGAT	0.388000													10	92					0	0	1	0	0
TEAD1	7003	broad.mit.edu	37	11	12785928	12785928	+	Missense_Mutation	SNP	A	A	G			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr11:12785928A>G	ENST00000361905.4	+	3	769	c.104A>G	c.(103-105)tAt>tGt	p.Y35C	TEAD1_ENST00000334310.6_Missense_Mutation_p.Y35C|TEAD1_ENST00000361985.2_Missense_Mutation_p.Y50C|TEAD1_ENST00000527636.1_Missense_Mutation_p.Y50C|TEAD1_ENST00000527575.1_Missense_Mutation_p.Y50C	NM_021961.5	NP_068780.2	P28347	TEAD1_HUMAN	TEA domain family member 1 (SV40 transcriptional enhancer factor)	50					hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(9)	17				Epithelial(150;0.00223)|BRCA - Breast invasive adenocarcinoma(625;0.236)		CTGGCTATCTATCCACCATGT	0.478000													11	92					0	0	1	0	0
ADPGK	83440	broad.mit.edu	37	15	73044692	73044692	+	Missense_Mutation	SNP	G	G	A			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr15:73044692G>A	ENST00000311669.8	-	7	1574	c.1481C>T	c.(1480-1482)cCt>cTt	p.P494L	ADPGK_ENST00000456471.2_Missense_Mutation_p.P220L	NM_031284.4	NP_112574.3	Q9BRR6	ADPGK_HUMAN	ADP-dependent glucokinase	495	ADPK.				glycolysis	extracellular region	ADP-specific glucokinase activity|metal ion binding			breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|lung(2)|skin(1)	7						CTAATAGTGAGGGTGTACTTC	0.433000													15	35					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913377		TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr7:140453136A>T	ENST00000288602.6	-	15	1859	c.1799T>A	c.(1798-1800)gTg>gAg	p.V600E		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	v-raf murine sarcoma viral oncogene homolog B	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(15453)|p.V600K(252)|p.V600R(44)|p.V600D(16)|p.V600A(12)|p.V600_K601>E(12)|p.V600G(11)|p.T599_R603>I(2)|p.V600Q(2)|p.V600_S605>EK(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insDFGLAT(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	NS(588)|adrenal_gland(3)|autonomic_ganglia(3)|biliary_tract(29)|bone(7)|breast(21)|central_nervous_system(99)|cervix(6)|endometrium(33)|eye(72)|gastrointestinal_tract_(site_indeterminate)(2)|genital_tract(4)|haematopoietic_and_lymphoid_tissue(436)|kidney(3)|large_intestine(6953)|liver(17)|lung(192)|oesophagus(4)|ovary(275)|pancreas(15)|pituitary(1)|prostate(25)|salivary_gland(1)|skin(6285)|small_intestine(12)|soft_tissue(40)|stomach(11)|testis(7)|thyroid(12220)|upper_aerodigestive_tract(13)|urinary_tract(3)	27380	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600D(K029AX_SKIN)|V600D(WM115_SKIN)|V600D(WM2664_SKIN)|V600E(8505C_THYROID)|V600E(A101D_SKIN)|V600E(A2058_SKIN)|V600E(A375_SKIN)|V600E(A673_BONE)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(BCPAP_THYROID)|V600E(BHT101_THYROID)|V600E(BT474_BREAST)|V600E(C32_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(COLO205_LARGE_INTESTINE)|V600E(COLO679_SKIN)|V600E(COLO741_SKIN)|V600E(COLO783_SKIN)|V600E(COLO800_SKIN)|V600E(COLO818_SKIN)|V600E(COLO829_SKIN)|V600E(COLO849_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(DU4475_BREAST)|V600E(ES2_OVARY)|V600E(G361_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(HS294T_SKIN)|V600E(HS695T_SKIN)|V600E(HS939T_SKIN)|V600E(IGR1_SKIN)|V600E(IGR37_SKIN)|V600E(IGR39_SKIN)|V600E(K029AX_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(LOXIMVI_SKIN)|V600E(MALME3M_SKIN)|V600E(MELHO_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(RKO_LARGE_INTESTINE)|V600E(RPMI7951_SKIN)|V600E(RVH421_SKIN)|V600E(SH4_SKIN)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(SKHEP1_LIVER)|V600E(SKMEL24_SKIN)|V600E(SKMEL28_SKIN)|V600E(SKMEL5_SKIN)|V600E(SW1417_LARGE_INTESTINE)|V600E(UACC257_SKIN)|V600E(UACC62_SKIN)|V600E(WM793_SKIN)|V600E(WM88_SKIN)|V600E(WM983B_SKIN)	61	"""Mis, T, O"""	"""AKAP9, KIAA1549"""	"""melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma"""		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				33	50					0	0	1	0	0
SENP2	59343	broad.mit.edu	37	3	185327074	185327074	+	Silent	SNP	T	T	C			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr3:185327074T>C	ENST00000296257.5	+	7	898	c.658T>C	c.(658-660)Ttg>Ctg	p.L220L	SENP2_ENST00000545472.1_Silent_p.L210L|SENP2_ENST00000427465.2_Silent_p.L44L	NM_021627.2	NP_067640.2	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific peptidase 2	220					mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(5)|skin(3)	12	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			CCGAAAGTTATTGGAACGACT	0.358000													35	55					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72340946	72340946	+	Missense_Mutation	SNP	C	C	T			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr17:72340946C>T	ENST00000389916.4	+	7	767	c.629C>T	c.(628-630)cCc>cTc	p.P210L		NM_153209.3	NP_694941.2	Q2TAC6	KIF19_HUMAN	kinesin family member 19	210	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(4)|kidney(6)|large_intestine(3)|lung(16)|ovary(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	41						ACCCAGGAGCCCACGGCCGCC	0.667000													6	41					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108488523	108488523	+	Missense_Mutation	SNP	A	A	G			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr2:108488523A>G	ENST00000408999.3	+	20	4140	c.4063A>G	c.(4063-4065)Aaa>Gaa	p.K1355E	RGPD4_ENST00000354986.4_Missense_Mutation_p.K1355E	NM_182588.2	NP_872394.2	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1355	RanBD1 2.				intracellular transport		binding			breast(1)|endometrium(7)|kidney(4)|lung(23)|pancreas(1)|prostate(1)|skin(3)|urinary_tract(3)	43						GGAAAATGAAAAAGTTGTTTT	0.363000													27	184					0	0	1	0	0
NXNL1	115861	broad.mit.edu	37	19	17571489	17571489	+	Missense_Mutation	SNP	C	C	T	rs150719211	byFrequency	TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr19:17571489C>T	ENST00000301944.2	-	1	274	c.190G>A	c.(190-192)Gag>Aag	p.E64K	CTD-2521M24.10_ENST00000594663.1_5'UTR	NM_138454.1	NP_612463.1	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	64	Thioredoxin.				cell redox homeostasis	nuclear outer membrane				central_nervous_system(1)|cervix(1)|large_intestine(1)|lung(1)|prostate(1)|upper_aerodigestive_tract(1)	6						ACATAGAACTCATCTGTGAGC	0.597000													5	103					0	0	1	0	0
GRB14	2888	broad.mit.edu	37	2	165365287	165365288	+	Frame_Shift_Ins	INS	-	-	T			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr2:165365287_165365288insT	ENST00000263915.3	-	7	1429_1430	c.891_892insA	c.(889-894)aaatggfs	p.W298fs	GRB14_ENST00000543549.1_Frame_Shift_Ins_p.W211fs	NM_004490.2	NP_004481.2	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	298	PH.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity	p.K297fs*23(2)		breast(3)|endometrium(2)|large_intestine(6)|lung(10)|ovary(7)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	32						GGTGCTCCATGTTTTTTTTTGC	0.371													9	137	---	---	---	---					
PURA	5813	broad.mit.edu	37	5	139494097	139494098	+	Frame_Shift_Ins	INS	-	-	A			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr5:139494097_139494098insA	ENST00000331327.3	+	1	390_391	c.331_332insA	c.(331-333)cgafs	p.R111fs		NM_005859.4	NP_005850.1	Q00577	PURA_HUMAN	purine-rich element binding protein A	111					DNA unwinding involved in replication|DNA-dependent DNA replication initiation	DNA replication factor A complex	double-stranded telomeric DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|single-stranded DNA binding|transcription factor binding			central_nervous_system(1)|lung(2)|ovary(1)|prostate(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGGAGTTCCGCGACTACCTG	0.688													7	13	---	---	---	---					
RP13-726E6.2	0	broad.mit.edu	37	11	3552650	3552651	+	RNA	INS	-	-	G	rs34642454		TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr11:3552650_3552651insG	ENST00000527970.1	-	0	285																											CAGCACCCCATGGGGGGGCCCT	0.500													3	6	---	---	---	---					
RP11-478B9.1	0	broad.mit.edu	37	12	45466373	45466374	+	RNA	INS	-	-	A			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr12:45466373_45466374insA	ENST00000548424.1	+	0	448																											AAGAAGCATTGAAAAAAATCTT	0.386													2	4	---	---	---	---					
ABCA17P	0	broad.mit.edu	37	16	2475097	2475098	+	RNA	DEL	TC	TC	-			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr16:2475097_2475098delTC	ENST00000469908.1	+	0	3047					NR_003574.1																						GGTAActctgtctctctctctc	0.559													2	4	---	---	---	---					
TUBB8P7	0	broad.mit.edu	37	16	90161966	90161966	+	RNA	DEL	T	T	-	rs56265310		TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr16:90161966delT	ENST00000564451.1	+	0	1319				TUBB8P7_ENST00000567960.1_RNA																							CTACCATGAGTTGGGGTCACC	0.542													7	2	---	---	---	---					
ARID3A	1820	broad.mit.edu	37	19	932497	932499	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr19:932497_932499delGAG	ENST00000263620.3	+	3	775_777	c.448_450delGAG	c.(448-450)del	p.E154del		NM_005224.2	NP_005215.1	Q99856	ARI3A_HUMAN	AT rich interactive domain 3A (BRIGHT-like)	154	Acidic.|Glu-rich.					cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(2)|ovary(1)	10		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ttacgaggatgaggaggaggagg	0.670													3	6	---	---	---	---					
AC006293.3	0	broad.mit.edu	37	19	55221804	55221805	+	RNA	INS	-	-	AC	rs45583536		TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr19:55221804_55221805insAC	ENST00000413439.1	+	0	1415																											CAGAGACAGAGACTGAGGGTCC	0.614													4	9	---	---	---	---					
NCOR1P1	0	broad.mit.edu	37	20	26084384	26084384	+	RNA	DEL	T	T	-			TCGA-EM-A2CS-01A-11D-A19J-08	TCGA-EM-A2CS-10A-01D-A19M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	55ab2585-c937-4a29-9caf-62daf8fccc5d	6a6fd1e9-9604-4d58-a7a7-3ce60b565972	g.chr20:26084384delT	ENST00000478176.1	-	0	150					NR_003678.1																						AAAAAGTCAGTTTTAAACCAC	0.328													9	11	---	---	---	---					
