Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LINC00264	0	broad.mit.edu	37	10	26880266	26880266	+	RNA	SNP	G	G	A	rs138111133	by1000genomes	TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr10:26880266G>A	ENST00000412114.1	+	0	501					NR_026793.1																						ACCAAGCCCAGTGGACAGATG	0.443000													5	53					0	0	1	0	0
SLC31A2	1318	broad.mit.edu	37	9	115923922	115923922	+	Missense_Mutation	SNP	G	G	C			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr9:115923922G>C	ENST00000259392.3	+	3	340	c.207G>C	c.(205-207)gaG>gaC	p.E69D		NM_001860.2	NP_001851.1	O15432	COPT2_HUMAN	solute carrier family 31 (copper transporter), member 2	69						integral to plasma membrane	copper ion transmembrane transporter activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(1)|stomach(1)|upper_aerodigestive_tract(1)	7						CCATCGCAGAGACAGACGGGG	0.552000													34	64					0	0	1	0	0
TSSC2	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr11:3427845C>T	ENST00000529482.1	+	0	962																											CTTCAAGTGGCAGGAGCAGAA	0.587000													4	57					0	0	1	0	0
DNM1P47	0	broad.mit.edu	37	15	102292953	102292953	+	RNA	SNP	T	T	C			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr15:102292953T>C	ENST00000561463.1	+	0	999																											GGCACAGCGGTGCGACGAGAT	0.587000													3	13					0	0	1	0	0
KLHL8	57563	broad.mit.edu	37	4	88106900	88106900	+	Missense_Mutation	SNP	G	G	A			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr4:88106900G>A	ENST00000273963.5	-	3	609	c.268C>T	c.(268-270)Ccc>Tcc	p.P90S	KLHL8_ENST00000498875.2_Intron|KLHL8_ENST00000425278.2_Intron|KLHL8_ENST00000545252.1_Intron|KLHL8_ENST00000512111.1_Missense_Mutation_p.P90S	NM_020803.3	NP_065854.3	Q9P2G9	KLHL8_HUMAN	kelch-like family member 8	90	BTB.									breast(1)|endometrium(5)|kidney(1)|large_intestine(3)|lung(5)|stomach(1)|upper_aerodigestive_tract(1)	17		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		CTAAAGTAGGGAATAACACAA	0.373000													7	24					0	0	1	0	0
PLEKHA3	65977	broad.mit.edu	37	2	179360222	179360222	+	Splice_Site	SNP	G	G	C			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr2:179360222G>C	ENST00000234453.4	+	5	852		c.e5-1			NM_019091.3	NP_061964.3	Q9HB20	PKHA3_HUMAN	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3							cytoplasm|membrane				endometrium(1)|kidney(1)|large_intestine(3)|lung(5)|ovary(1)	11			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.0266)|all cancers(119;0.0865)			TAATTTTTCAGAACATGAATG	0.363000													36	38					0	0	1	0	0
ESYT2	57488	broad.mit.edu	37	7	158527136	158527136	+	Missense_Mutation	SNP	T	T	A			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr7:158527136T>A	ENST00000251527.5	-	21	2678	c.2613A>T	c.(2611-2613)gaA>gaT	p.E871D	ESYT2_ENST00000435514.2_Missense_Mutation_p.E306D	NM_020728.2	NP_065779.1	A0FGR8	ESYT2_HUMAN	extended synaptotagmin-like protein 2	899	C2 3.					integral to membrane|plasma membrane				breast(1)|central_nervous_system(2)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(7)|lung(16)|prostate(2)	32						CTTTGGCAAGTTCTTCAGATG	0.547000													25	52					0	0	1	0	0
KIAA0907	22889	broad.mit.edu	37	1	155887393	155887393	+	Missense_Mutation	SNP	T	T	G			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr1:155887393T>G	ENST00000368320.3	-	11	1362	c.1337A>C	c.(1336-1338)cAg>cCg	p.Q446P	KIAA0907_ENST00000368321.3_Missense_Mutation_p.Q446P			Q7Z7F0	K0907_HUMAN	KIAA0907	446	Pro-rich.									breast(1)|endometrium(2)|kidney(1)|large_intestine(4)|liver(1)|lung(11)|urinary_tract(1)	21	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggctgggg	0.567000													10	43					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117375679	117375679	+	Silent	SNP	G	G	A	rs139385882		TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr11:117375679G>A	ENST00000321322.6	-	10	2323	c.2322C>T	c.(2320-2322)gaC>gaT	p.D774D	DSCAML1_ENST00000527706.1_Silent_p.D504D	NM_020693.2	NP_065744.2	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	714	Ig-like C2-type 8.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			breast(3)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(7)|large_intestine(24)|lung(49)|ovary(6)|pancreas(1)|prostate(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	110	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GGGGGTAGCCGTCCACCGAGC	0.597000													29	49					0	0	1	0	0
OR14C36	127066	broad.mit.edu	37	1	248512355	248512355	+	Silent	SNP	G	G	A	rs146830794		TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr1:248512355G>A	ENST00000317861.1	+	1	279	c.279G>A	c.(277-279)gcG>gcA	p.A93A		NM_001001918.1	NP_001001918.1	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C, member 36	93					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.A93A(1)		central_nervous_system(1)|endometrium(2)|large_intestine(4)|liver(2)|lung(20)|ovary(2)|prostate(3)|skin(7)|upper_aerodigestive_tract(2)	43						TTTCTAAGGCGGGATGTGTAG	0.478000													5	71					0	0	1	0	0
WHAMMP3	0	broad.mit.edu	37	15	23191911	23191911	+	RNA	SNP	C	C	T	rs147199465	by1000genomes	TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr15:23191911C>T	ENST00000400153.2	-	0	1785					NR_003521.1																						TGATTTTCTTCGCACTGATCC	0.408000													5	42					0	0	1	0	0
LL22NC03-80A10.6	0	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr22:22664606A>G	ENST00000426066.1	+	0	787					NR_027293.1																						GTCTTCATGCAAACTTGGTAT	0.398000													3	31					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88886182	88886182	+	Silent	SNP	C	C	T			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr8:88886182C>T	ENST00000319675.3	-	1	114	c.18G>A	c.(16-18)ccG>ccA	p.P6P		NM_152418.3	NP_689631.1	Q8NA75	DC4L2_HUMAN	DDB1 and CUL4 associated factor 4-like 2	6										breast(3)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(19)|liver(2)|lung(40)|ovary(1)|prostate(3)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	83						CGAGCAGTCGCGGTCTTTTGC	0.517000													24	25					0	0	1	0	0
CSAG4	0	broad.mit.edu	37	X	151896231	151896231	+	RNA	SNP	A	A	G			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chrX:151896231A>G	ENST00000361201.4	-	0	499					NR_073432.1															endometrium(2)|kidney(2)|lung(1)	5						GAGTGGCTGGATAGTGTTGGC	0.517000													8	27					0	0	1	0	0
OLFM1	10439	broad.mit.edu	37	9	137982159	137982159	+	Missense_Mutation	SNP	G	G	A			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr9:137982159G>A	ENST00000252854.4	+	2	402	c.215G>A	c.(214-216)cGc>cAc	p.R72H	OLFM1_ENST00000392991.4_Missense_Mutation_p.R90H|OLFM1_ENST00000371793.3_Missense_Mutation_p.R90H|OLFM1_ENST00000371796.3_Missense_Mutation_p.R63H|OLFM1_ENST00000277415.11_Missense_Mutation_p.R72H	NM_014279.4	NP_055094.1	Q99784	NOE1_HUMAN	olfactomedin 1	90					nervous system development	endoplasmic reticulum lumen	protein binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(8)|lung(6)|ovary(1)|prostate(1)|skin(2)	21		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		CGGGATGCCCGCACAAAACAG	0.557000													20	29					0	0	1	0	0
ADPRH	141	broad.mit.edu	37	3	119305355	119305355	+	Silent	SNP	G	G	A			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr3:119305355G>A	ENST00000478399.1	+	3	1927	c.522G>A	c.(520-522)gcG>gcA	p.A174A	ADPRH_ENST00000478927.1_Silent_p.A174A|ADPRH_ENST00000465513.1_Silent_p.A174A|ADPRH_ENST00000357003.3_Silent_p.A174A|ADPRH_ENST00000471850.1_3'UTR			P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	174					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			breast(1)|kidney(1)|lung(10)|ovary(1)	13		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		GGGCCCTTGCGTCTGCTCTTT	0.537000													26	218					0	0	1	0	0
RP11-206L10.10	0	broad.mit.edu	37	1	745643	745643	+	RNA	DEL	C	C	-			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr1:745643delC	ENST00000435300.1	-	0	340																											TTCAAAGTGACAGACTGTGGG	0.299													7	7	---	---	---	---					
GRM6	2916	broad.mit.edu	37	5	178418554	178418555	+	Frame_Shift_Ins	INS	-	-	C	rs17078894	byFrequency	TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr5:178418554_178418555insC	ENST00000231188.5	-	3	905_906	c.727_728insG	c.(727-729)ctgfs	p.L243fs	GRM6_ENST00000517717.1_Frame_Shift_Ins_p.L243fs	NM_000843.3	NP_000834.2	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6	243					detection of visible light|visual perception	integral to plasma membrane				NS(2)|breast(4)|endometrium(9)|large_intestine(12)|lung(21)|ovary(2)|pancreas(1)|prostate(3)|urinary_tract(1)	55	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGCAATACAGACCCCCCCTGGG	0.624													75	156	---	---	---	---					
ECM2	1842	broad.mit.edu	37	9	95277146	95277148	+	In_Frame_Del	DEL	TCC	TCC	-	rs137929518	byFrequency	TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr9:95277146_95277148delTCC	ENST00000344604.5	-	4	968_970	c.819_821delGGA	c.(817-822)gat>ga	p.ED273del	ECM2_ENST00000444490.2_In_Frame_Del_p.ED251del|CENPP_ENST00000375587.3_Intron	NM_001197295.1|NM_001393.3	NP_001184224.1|NP_001384.1	O94769	ECM2_HUMAN	extracellular matrix protein 2, female organ and adipocyte specific	273	Poly-Glu.				cell-matrix adhesion		integrin binding			breast(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(10)|ovary(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	27						ctcctcctcatcctcctcctcct	0.606													7	186	---	---	---	---					
MICALCL	84953	broad.mit.edu	37	11	12316387	12316389	+	In_Frame_Del	DEL	CTA	CTA	-	rs3812754	byFrequency	TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr11:12316387_12316389delCTA	ENST00000256186.2	+	3	1700_1702	c.1409_1411delCTA	c.(1408-1413)cca>c	p.PT470del		NM_032867.2	NP_116256.2	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	470	Poly-Pro.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding	p.T471delT(2)		breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(5)|lung(5)|ovary(3)|skin(3)|upper_aerodigestive_tract(1)	30				Epithelial(150;0.00177)		cctcctcctcctACAGCGGGAGG	0.576													5	5	---	---	---	---					
BCL9L	283149	broad.mit.edu	37	11	118774003	118774014	+	In_Frame_Del	DEL	CGCCCCCGCCCC	CGCCCCCGCCCC	-			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr11:118774003_118774014delCGCCCCCGCCCC	ENST00000334801.3	-	4	1644_1655	c.680_691delGGGGCGGGGGCG	c.(679-693)gtc>g	p.GGGGV227del	BCL9L_ENST00000526143.1_5'UTR	NM_182557.2	NP_872363.1	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	227					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			NS(3)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(13)|lung(20)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|urinary_tract(2)	56	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TTTCCGGGGAcgcccccgcccccgcccccgcc	0.693													4	5	---	---	---	---					
CLIP1	6249	broad.mit.edu	37	12	122812690	122812691	+	Frame_Shift_Ins	INS	-	-	T			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr12:122812690_122812691insT	ENST00000358808.2	-	16	3173_3174	c.3019_3020insA	c.(3019-3021)ccafs	p.P1007fs	CLIP1_ENST00000361654.4_Frame_Shift_Ins_p.P896fs|CLIP1_ENST00000540338.1_Frame_Shift_Ins_p.P1018fs|CLIP1_ENST00000537178.1_Frame_Shift_Ins_p.P972fs|CLIP1_ENST00000545889.1_Frame_Shift_Ins_p.P593fs|CLIP1_ENST00000302528.7_Frame_Shift_Ins_p.P1007fs	NM_001247997.1|NM_002956.2	NP_001234926.1|NP_002947.1	P30622	CLIP1_HUMAN	CAP-GLY domain containing linker protein 1	1018					mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			NS(1)|breast(5)|endometrium(4)|kidney(5)|large_intestine(16)|liver(1)|lung(21)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	60	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		CTGGTTGTGGCTTGTTTCCATT	0.505													8	199	---	---	---	---					
OR4N2	390429	broad.mit.edu	37	14	20296055	20296056	+	Frame_Shift_Ins	INS	-	-	T	rs149523724	by1000genomes	TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr14:20296055_20296056insT	ENST00000568211.1	+	1	448_449	c.448_449insT	c.(448-450)tggfs	p.W150fs	OR4N2_ENST00000315947.1_Frame_Shift_Ins_p.W150fs			Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N, member 2	150					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|liver(1)|lung(32)|ovary(2)|prostate(1)|skin(2)|stomach(2)	52	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGCTCTGTGGCTTGGGGGTTTT	0.530													43	331	---	---	---	---					
RP13-395E19.3	0	broad.mit.edu	37	15	32716934	32716934	+	RNA	DEL	C	C	-			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr15:32716934delC	ENST00000562108.1	-	0	277				ULK4P1_ENST00000565949.1_RNA																							AAAAAAAAAACTTTTGAGGCA	0.289													8	25	---	---	---	---					
DNM1P47	0	broad.mit.edu	37	15	102293062	102293064	+	RNA	DEL	CTC	CTC	-	rs4965539		TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr15:102293062_102293064delCTC	ENST00000561463.1	+	0	1108_1110																											AGTTCATCTTCTCAGAGCTGCTG	0.576													2	4	---	---	---	---					
CTC-513N18.6	0	broad.mit.edu	37	19	20634038	20634039	+	RNA	DEL	TG	TG	-			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr19:20634038_20634039delTG	ENST00000598131.1	+	0	160																											TTAGTAAAAATGTGTGTGTGTG	0.401													10	70	---	---	---	---					
GCAT	23464	broad.mit.edu	37	22	38211250	38211251	+	Frame_Shift_Ins	INS	-	-	A			TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chr22:38211250_38211251insA	ENST00000323205.6	+	5	835_836	c.772_773insA	c.(772-774)atgfs	p.M258fs	GCAT_ENST00000248924.6_Frame_Shift_Ins_p.M232fs	NM_001171690.1	NP_001165161.1	O75600	KBL_HUMAN	glycine C-acetyltransferase	232					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(8)|skin(1)	12	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CTTCATGGATGAATGCCATGCC	0.629													21	15	---	---	---	---					
FTX	0	broad.mit.edu	37	X	73506653	73506654	+	RNA	INS	-	-	A	rs149262205		TCGA-ET-A2N3-01B-21D-A23M-08	TCGA-ET-A2N3-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcfcc7e4-b937-4f55-a703-e73a783d1fc1	27ec3857-71ae-4f7d-944d-112b47b0b97d	g.chrX:73506653_73506654insA	ENST00000429124.1	-	0	174																											acctgtcccttaaaaaaaaaaa	0.455													3	4	---	---	---	---					
