Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GLRB	2743	broad.mit.edu	37	4	158065014	158065014	+	Silent	SNP	C	C	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr4:158065014C>T	ENST00000264428.4	+	8	1077	c.807C>T	c.(805-807)taC>taT	p.Y269Y	GLRB_ENST00000512619.1_Intron|GLRB_ENST00000541722.1_Silent_p.Y269Y|GLRB_ENST00000509282.1_Silent_p.Y269Y	NM_000824.4	NP_000815.1	P48167	GLRB_HUMAN	glycine receptor, beta	269					nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			central_nervous_system(1)|endometrium(3)|large_intestine(11)|lung(6)|skin(5)|upper_aerodigestive_tract(1)	27	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TCGGCTTTTACATGATGGGGG	0.537000													16	37					0	0	1	0	0
ERI3	79033	broad.mit.edu	37	1	44804819	44804819	+	Silent	SNP	G	G	A			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr1:44804819G>A	ENST00000372257.2	-	3	568	c.387C>T	c.(385-387)ggC>ggT	p.G129G	ERI3_ENST00000495828.1_5'UTR|ERI3_ENST00000537474.1_Intron	NM_024066.1	NP_076971.1	O43414	ERI3_HUMAN	ERI1 exoribonuclease family member 3	129						intracellular	exonuclease activity|metal ion binding|nucleic acid binding			endometrium(2)|large_intestine(2)|lung(7)|ovary(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	16						CCATGGATGCGCCAAAGCCGT	0.547000													5	245					0	0	1	0	0
LINC00957	0	broad.mit.edu	37	7	44080541	44080541	+	RNA	SNP	G	G	A	rs3099751		TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr7:44080541G>A	ENST00000441052.1	+	0	1226																											CTGCCGCTGCGCCCCGCACCC	0.617000													11	57					0	0	1	0	0
GTPBP4	23560	broad.mit.edu	37	10	1046705	1046705	+	Missense_Mutation	SNP	G	G	T	rs150247999	byFrequency	TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr10:1046705G>T	ENST00000360803.4	+	7	825	c.743G>T	c.(742-744)cGt>cTt	p.R248L	GTPBP4_ENST00000538293.1_Missense_Mutation_p.R132L|GTPBP4_ENST00000491635.1_3'UTR|GTPBP4_ENST00000545048.1_Missense_Mutation_p.R201L	NM_012341.2	NP_036473.2	Q9BZE4	NOG1_HUMAN	GTP binding protein 4	248					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			endometrium(2)|kidney(1)|large_intestine(3)|lung(11)|ovary(1)|prostate(2)|skin(1)	21		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		GCCCACCTCCGTGCTGCGGTC	0.557000													10	70					7.48243e-07	9.47774e-07	1	1	0
MMD	23531	broad.mit.edu	37	17	53471782	53471782	+	Silent	SNP	C	C	A			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr17:53471782C>A	ENST00000262065.3	-	7	926	c.630G>T	c.(628-630)ctG>ctT	p.L210L		NM_012329.2	NP_036461.2	Q15546	PAQRB_HUMAN	monocyte to macrophage differentiation-associated	210					cytolysis	integral to plasma membrane|late endosome membrane|lysosomal membrane|membrane fraction	receptor activity			breast(1)|large_intestine(1)|lung(4)|prostate(1)	7						TGGCCACAAACAGGTGCCAGA	0.478000													4	148					1	1	1	1	0
MARK3	4140	broad.mit.edu	37	14	103958164	103958164	+	Missense_Mutation	SNP	G	G	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr14:103958164G>T	ENST00000429436.2	+	15	2147	c.1637G>T	c.(1636-1638)aGt>aTt	p.S546I	MARK3_ENST00000553942.1_Missense_Mutation_p.S546I|MARK3_ENST00000440884.3_Missense_Mutation_p.S467I|MARK3_ENST00000561071.1_3'UTR|MARK3_ENST00000416682.2_Missense_Mutation_p.S569I|MARK3_ENST00000335102.5_Missense_Mutation_p.S569I|MARK3_ENST00000303622.9_Missense_Mutation_p.S546I|MARK3_ENST00000216288.7_Missense_Mutation_p.S530I	NM_001128918.1|NM_001128919.1	NP_001122390.1|NP_001122391.1	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	546							ATP binding|protein binding|protein serine/threonine kinase activity			autonomic_ganglia(1)|breast(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(6)|lung(10)|ovary(2)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	30		Melanoma(154;0.155)	Epithelial(46;0.241)			AGTATCAGTAGTGCAGCCACC	0.488000													22	58					4.54149e-19	6.16344e-19	1	1	0
PRDM7	11105	broad.mit.edu	37	16	90126908	90126908	+	Silent	SNP	C	C	G			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr16:90126908C>G	ENST00000449207.2	-	9	1093	c.1074G>C	c.(1072-1074)ggG>ggC	p.G358G	PRDM7_ENST00000325921.6_Intron|PRDM7_ENST00000407825.1_Intron	NM_001098173.1	NP_001091643.1	Q9NQW5	PRDM7_HUMAN	PR domain containing 7	358	SET.					chromosome|nucleus	nucleic acid binding			lung(2)|ovary(2)|stomach(1)	5		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CATACTCATCCCCAGACCAGA	0.532000													15	61					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168096871	168096871	+	Missense_Mutation	SNP	T	T	C			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr5:168096871T>C	ENST00000519560.1	-	35	4672	c.4253A>G	c.(4252-4254)cAc>cGc	p.H1418R	SLIT3_ENST00000332966.8_Missense_Mutation_p.H1425R|SLIT3_ENST00000404867.3_Missense_Mutation_p.H1418R	NM_001271946.1|NM_003062.2	NP_001258875.1|NP_003053.1	O75094	SLIT3_HUMAN	slit homolog 3 (Drosophila)	1418	EGF-like 9.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(15)|liver(2)|lung(48)|ovary(4)|prostate(7)|skin(6)|upper_aerodigestive_tract(3)|urinary_tract(1)	100	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTGCCCATGGTGACACTTGAA	0.577000													10	33					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169510502	169510502	+	Missense_Mutation	SNP	G	G	T	rs140018525	byFrequency	TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr1:169510502G>T	ENST00000367796.3	-	13	4042	c.3841C>A	c.(3841-3843)Ctt>Att	p.L1281I	F5_ENST00000367797.3_Missense_Mutation_p.L1276I			P12259	FA5_HUMAN	coagulation factor V (proaccelerin, labile factor)	1276	35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			NS(1)|breast(4)|central_nervous_system(4)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(24)|lung(55)|ovary(3)|prostate(4)|skin(5)|stomach(1)|upper_aerodigestive_tract(7)|urinary_tract(1)	128	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGGAGAAAGGGGCATCTGA	0.502000													7	366					2.0095e-06	2.38628e-06	1	1	0
MAMLD1	10046	broad.mit.edu	37	X	149639635	149639635	+	Missense_Mutation	SNP	A	A	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chrX:149639635A>T	ENST00000370401.2	+	4	2100	c.1790A>T	c.(1789-1791)cAg>cTg	p.Q597L	MAMLD1_ENST00000432680.2_Missense_Mutation_p.Q572L|MAMLD1_ENST00000262858.5_Missense_Mutation_p.Q597L|MAMLD1_ENST00000426613.2_Missense_Mutation_p.Q572L|MAMLD1_ENST00000455522.2_Missense_Mutation_p.Q78L			Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	597	Poly-Gln.				male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				breast(1)|endometrium(4)|kidney(3)|large_intestine(12)|lung(14)|ovary(1)|prostate(2)	37	Acute lymphoblastic leukemia(192;6.56e-05)					TTgcagctgcagcagcagcag	0.607000													4	159					0	0	1	0	0
ZFR	51663	broad.mit.edu	37	5	32407029	32407029	+	Silent	SNP	A	A	T	rs139769264		TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr5:32407029A>T	ENST00000265069.8	-	6	984	c.882T>A	c.(880-882)gcT>gcA	p.A294A		NM_016107.3	NP_057191.2	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	294	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding	p.A294A(1)		breast(1)|endometrium(3)|kidney(3)|large_intestine(9)|lung(14)|upper_aerodigestive_tract(2)	32				STAD - Stomach adenocarcinoma(35;0.19)		cagcagcagcagctgctgctg	0.483000													3	43					0	0	1	0	0
GH2	2689	broad.mit.edu	37	17	61959155	61959155	+	Missense_Mutation	SNP	C	C	T	rs148779841		TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr17:61959155C>T	ENST00000332800.7	-	1	140	c.7G>A	c.(7-9)Gca>Aca	p.A3T	GH2_ENST00000456543.2_Missense_Mutation_p.A3T|GH2_ENST00000449787.2_Missense_Mutation_p.A3T|GH2_ENST00000423893.2_Missense_Mutation_p.A3T	NM_002059.4|NM_022557.3|NM_022558.3	NP_002050.1|NP_072051.1|NP_072052.1	P01242	SOM2_HUMAN	growth hormone 2	3						extracellular region	hormone activity	p.A3T(2)		breast(3)|large_intestine(3)|lung(14)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(2)	24						CGCTTACCTGCAGCCATTGCC	0.597000													4	59					0	0	1	0	0
TNFAIP2	7127	broad.mit.edu	37	14	103596143	103596143	+	Silent	SNP	C	C	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr14:103596143C>T	ENST00000560869.1	+	4	1566	c.927C>T	c.(925-927)ccC>ccT	p.P309P	TNFAIP2_ENST00000333007.1_Silent_p.P309P|TNFAIP2_ENST00000451723.2_Intron			Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	309					angiogenesis|cell differentiation	extracellular space				NS(1)|breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(4)|prostate(1)|upper_aerodigestive_tract(1)	11		Melanoma(154;0.155)	Epithelial(46;0.191)			GCCTCCTGCCCCCCAGGCAGA	0.652000													18	33					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20327340	20327340	+	Missense_Mutation	SNP	C	C	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr16:20327340C>T	ENST00000302555.5	-	9	1588	c.1439G>A	c.(1438-1440)cGc>cAc	p.R480H	GP2_ENST00000381360.5_Missense_Mutation_p.R336H|GP2_ENST00000381362.4_Missense_Mutation_p.R483H|GP2_ENST00000341642.5_Missense_Mutation_p.R333H			P55259	GP2_HUMAN	glycoprotein 2 (zymogen granule membrane)	483	ZP.					anchored to membrane|extracellular region|plasma membrane				breast(1)|endometrium(1)|kidney(1)|large_intestine(7)|lung(25)|ovary(3)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	48						TACTTCACTGCGGACTTGACT	0.488000													4	72					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr14:105418145G>A	ENST00000333244.5	-	7	3762	c.3643C>T	c.(3643-3645)Ccc>Tcc	p.P1215S	AHNAK2_ENST00000557457.1_Intron	NM_138420.2	NP_612429.2	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1215						nucleus				cervix(4)|endometrium(4)|large_intestine(3)|lung(14)|ovary(2)|prostate(2)|skin(1)|stomach(3)	33		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCGGAAGGGGGCTGAATGCTG	0.647000													3	3					0	0	1	0	0
BPTF	2186	broad.mit.edu	37	17	65888050	65888050	+	Missense_Mutation	SNP	C	C	A			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr17:65888050C>A	ENST00000321892.4	+	7	2394	c.2333C>A	c.(2332-2334)aCc>aAc	p.T778N	BPTF_ENST00000424123.3_Missense_Mutation_p.T639N|BPTF_ENST00000335221.5_Missense_Mutation_p.T778N|BPTF_ENST00000306378.6_Missense_Mutation_p.T652N			Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	778					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(3)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(16)|lung(23)|ovary(3)|pancreas(2)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(2)	78	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CGAATCATCACCAGATTGCGG	0.473000													5	39					0.014758	0.0151569	1	1	0
PCNX	22990	broad.mit.edu	37	14	71443799	71443799	+	Missense_Mutation	SNP	C	C	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr14:71443799C>T	ENST00000304743.2	+	6	1191	c.745C>T	c.(745-747)Cac>Tac	p.H249Y	PCNX_ENST00000439984.3_Missense_Mutation_p.H249Y|PCNX_ENST00000238570.5_Missense_Mutation_p.H249Y	NM_014982.2	NP_055797.2	Q96RV3	PCX1_HUMAN	pecanex homolog (Drosophila)	249	Poly-His.					integral to membrane				NS(2)|biliary_tract(1)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(14)|liver(2)|lung(40)|ovary(1)|prostate(7)|skin(2)|urinary_tract(1)	87			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TAACCACCACCACCATGTTGA	0.493000													5	48					0	0	1	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102549601	102549601	+	Nonsense_Mutation	SNP	C	C	A			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr14:102549601C>A	ENST00000334701.7	-	10	2172	c.1891G>T	c.(1891-1893)Gaa>Taa	p.E631*	HSP90AA1_ENST00000216281.8_Nonsense_Mutation_p.E509*|HSP90AA1_ENST00000441629.2_Nonsense_Mutation_p.E330*	NM_001017963.2	NP_001017963.2	P07900	HS90A_HUMAN	heat shock protein 90kDa alpha (cytosolic), class A member 1	509					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			breast(1)|central_nervous_system(2)|endometrium(2)|kidney(6)|large_intestine(3)|liver(1)|lung(10)|ovary(2)|prostate(1)	28					Rifabutin(DB00615)	CGAAGACGTTCCACAAAGGCT	0.413000													32	113					9.80977e-26	1.38063e-25	1	1	0
OR5M3	219482	broad.mit.edu	37	11	56237418	56237418	+	Missense_Mutation	SNP	C	C	G			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr11:56237418C>G	ENST00000312240.2	-	1	596	c.556G>C	c.(556-558)Gcc>Ccc	p.A186P		NM_001004742.2	NP_001004742.2	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M, member 3	186					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|central_nervous_system(2)|endometrium(2)|large_intestine(7)|lung(15)|ovary(2)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	37	Esophageal squamous(21;0.00448)					CCAGCACAGGCCATTTTGATG	0.398000													13	172					0	0	1	0	0
C17orf97	400566	broad.mit.edu	37	17	263327	263327	+	Silent	SNP	C	C	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr17:263327C>T	ENST00000360127.6	+	2	709	c.693C>T	c.(691-693)gcC>gcT	p.A231A	C17orf97_ENST00000571106.1_Intron|AC108004.3_ENST00000466740.2_RNA	NM_001013672.4	NP_001013694.4	Q6ZQX7	CQ097_HUMAN	chromosome 17 open reading frame 97	231	20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.									breast(1)|kidney(2)|large_intestine(4)|lung(4)|ovary(1)|prostate(1)|skin(1)	14						ACCCCGAGGCCCTCAAGGGCT	0.721000													4	41					0	0	1	0	0
CSAG4	0	broad.mit.edu	37	X	151896589	151896589	+	RNA	SNP	C	C	A			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chrX:151896589C>A	ENST00000361201.4	-	0	351					NR_073432.1													p.L11F(1)		endometrium(2)|kidney(2)|lung(1)	5						GGTTGTTGGACAATGGGCTGG	0.557000													5	221					2.0095e-06	2.38628e-06	1	1	0
AC024560.3	0	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	A	G	rs144273946	by1000genomes	TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr3:197348674A>G	ENST00000418868.1	-	0	585					NR_003266.2																						GGCTCTGTCCACCAAATGCAC	0.478000													4	115					0	0	1	0	0
TBP	6908	broad.mit.edu	37	6	170871049	170871049	+	Silent	SNP	G	G	A	rs10592951		TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr6:170871049G>A	ENST00000392092.2	+	3	504	c.225G>A	c.(223-225)caG>caA	p.Q75Q	TBP_ENST00000540980.1_Silent_p.Q55Q|TBP_ENST00000230354.6_Silent_p.Q75Q	NM_003194.4	NP_003185.1	P20226	TBP_HUMAN	TATA box binding protein	75	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding	p.Q75Q(2)		breast(2)|central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(2)|lung(9)|ovary(1)|prostate(4)|urinary_tract(1)	26		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		aacagcaacagcagcagcagc	0.567000													5	61					0	0	1	0	0
LINC00969	0	broad.mit.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs12107841	by1000genomes	TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr3:195400728A>G	ENST00000445430.1	+	0	1324																											GATTGTGCCCAGCCTGTACGC	0.587000													4	22					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130921558	130921558	+	Missense_Mutation	SNP	G	G	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr12:130921558G>T	ENST00000261655.4	-	10	2047	c.1884C>A	c.(1882-1884)agC>agA	p.S628R	RIMBP2_ENST00000536002.1_Missense_Mutation_p.S536R|RIMBP2_ENST00000535703.1_Missense_Mutation_p.S536R	NM_015347.4	NP_056162.4	O15034	RIMB2_HUMAN	RIMS binding protein 2	628	Pro-rich.					cell junction|synapse				NS(2)|breast(1)|central_nervous_system(5)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(23)|lung(33)|ovary(3)|pancreas(1)|prostate(3)|skin(6)|upper_aerodigestive_tract(5)|urinary_tract(1)	96	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CAGGTGCACGGCTCTGCTCCC	0.662000													13	22					4.3838e-07	5.74429e-07	1	1	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276879	71276879	+	Silent	SNP	G	G	T	rs36179995		TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr11:71276879G>T	ENST00000398531.1	+	1	271	c.246G>T	c.(244-246)ggG>ggT	p.G82G	KRTAP5-10_ENST00000376536.4_Intron	NM_001012710.1	NP_001012728.1	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	82	7 X 4 AA repeats of C-C-X-P.					keratin filament				endometrium(2)|large_intestine(1)|lung(4)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	12						GCTCCAAAGGGGGCTGTGGTT	0.682000													6	291					0.00307968	0.00344199	1	1	0
MLTK	0	broad.mit.edu	37	2	174086201	174086201	+	Silent	SNP	C	C	T			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr2:174086201C>T	ENST00000338983.3	+	12	1506	c.1311C>T	c.(1309-1311)gaC>gaT	p.D437D	MLTK_ENST00000539448.1_Silent_p.D437D|MLK7-AS1_ENST00000423106.2_RNA|MLK7-AS1_ENST00000422703.1_RNA|MLTK_ENST00000409176.2_Intron|MLTK_ENST00000431503.2_Silent_p.D336D|MLTK_ENST00000375213.3_Intron	NM_133646.2	NP_598407.1																					CAGAAGGtgacgatgatgatg	0.403000													5	38					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39799059	39799060	+	Frame_Shift_Ins	INS	-	-	G			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr1:39799059_39799060insG	ENST00000564288.1	+	37	7576_7577	c.6799_6800insG	c.(6799-6801)ggafs	p.G2267fs	MACF1_ENST00000372915.3_Frame_Shift_Ins_p.G2272fs|MACF1_ENST00000476350.1_Intron|MACF1_ENST00000317713.7_Intron|MACF1_ENST00000361689.2_Intron|MACF1_ENST00000539005.1_Intron|MACF1_ENST00000567887.1_Frame_Shift_Ins_p.G2304fs|MACF1_ENST00000545844.1_Intron|MACF1_ENST00000289893.4_Frame_Shift_Ins_p.G707fs			Q9UPN3	MACF1_HUMAN	microtubule-actin crosslinking factor 1	2272					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			breast(11)|central_nervous_system(5)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(36)|lung(78)|ovary(12)|prostate(2)|skin(9)|stomach(2)|upper_aerodigestive_tract(8)|urinary_tract(10)	203	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGATAGTGGCAGGGAAATTTTT	0.391													25	111	---	---	---	---					
RP11-435B5.5	0	broad.mit.edu	37	1	143391935	143391936	+	RNA	INS	-	-	TG			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr1:143391935_143391936insTG	ENST00000428624.1	+	0	2065				RP11-435B5.4_ENST00000423249.1_lincRNA																							ATATATATATATAAAGAGATTG	0.252													2	4	---	---	---	---					
NEK10	152110	broad.mit.edu	37	3	27343258	27343258	+	Frame_Shift_Del	DEL	A	A	-			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr3:27343258delA	ENST00000429845.2	-	14	1459	c.1097delT	c.(1096-1098)acfs	p.I366fs	NEK10_ENST00000341435.5_Frame_Shift_Del_p.I366fs			Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10	366							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(2)|breast(1)|central_nervous_system(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(9)|ovary(5)|pancreas(1)|prostate(1)|skin(4)|stomach(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	41						AAGCTGCTGGATTCGGCCTGC	0.373													2	4	---	---	---	---					
RP11-3P17.4	0	broad.mit.edu	37	3	161146872	161146873	+	RNA	DEL	AT	AT	-			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr3:161146872_161146873delAT	ENST00000473595.1	+	0	1231					NR_102265.1																						TGGTGAAAAGATATATATATAT	0.342													7	15	---	---	---	---					
CCT6P1	0	broad.mit.edu	37	7	65226569	65226569	+	RNA	DEL	T	T	-			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr7:65226569delT	ENST00000442266.1	+	0	1167																											gcccggccCCttttttttttt	0.413													5	2	---	---	---	---					
PODXL	5420	broad.mit.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659		TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr7:131241030_131241035delGGCGAC	ENST00000541194.1	-	1	341_346	c.84_89delGTCGCC	c.(82-90)ccc>cc	p.PSP28del	PODXL_ENST00000322985.9_In_Frame_Del_p.PSP28del|PODXL_ENST00000378555.3_In_Frame_Del_p.PSP28del|PODXL_ENST00000537928.1_In_Frame_Del_p.PSP28del|PODXL_ENST00000465001.1_Intron	NM_001018111.2	NP_001018121.1	O00592	PODXL_HUMAN	podocalyxin-like	28					cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle		p.P30_S31delPS(2)		NS(1)|breast(3)|endometrium(3)|kidney(3)|large_intestine(4)|lung(4)|pancreas(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	24	Melanoma(18;0.162)					ATTCTGGGAGggcgacggcgacggcg	0.748													5	7	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149518533	149518533	+	RNA	DEL	C	C	-	rs11353848		TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr7:149518533delC	ENST00000378016.2	+	0	12602							A2VEC9	SSPO_HUMAN	SCO-spondin						cell adhesion	extracellular space	peptidase inhibitor activity					Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GAGGAGCAGTCCCAGAGCCAG	0.711													3	3	---	---	---	---					
MMP12	4321	broad.mit.edu	37	11	102738795	102738796	+	RNA	INS	-	-	T	rs33924686	by1000genomes	TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr11:102738795_102738796insT	ENST00000532855.1	-	0	725_726							P39900	MMP12_HUMAN	matrix metallopeptidase 12 (macrophage elastase)						positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding	p.N211fs*20(2)		autonomic_ganglia(1)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(4)|lung(9)|prostate(5)|skin(1)|upper_aerodigestive_tract(1)	26		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	AGGAACAAGTGGTGCCTAAGAA	0.416													14	1	---	---	---	---					
EP400	57634	broad.mit.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAG	rs113304321	by1000genomes	TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr12:132547093_132547094insCAG	ENST00000333577.4	+	48	8398_8399	c.8289_8290insCAG	c.(8287-8292)caagca>caCAGagca	p.2763_2763Q>HR	EP400_ENST00000330386.6_In_Frame_Ins_p.2646_2646Q>HR|EP400_ENST00000389562.2_In_Frame_Ins_p.2726_2726Q>HR|EP400_ENST00000389561.2_In_Frame_Ins_p.2727_2727Q>HR|EP400_ENST00000332482.4_In_Frame_Ins_p.2690_2690Q>HR			Q96L91	EP400_HUMAN	E1A binding protein p400	2763	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2726Q(9)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcaacaacagcagcagca	0.564													7	57	---	---	---	---					
SNHG14	0	broad.mit.edu	37	15	25456925	25456925	+	RNA	DEL	G	G	-			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr15:25456925delG	ENST00000424208.1	+	0	2516				SNHG14_ENST00000450809.1_RNA|SNHG14_ENST00000424333.1_RNA	NR_003305.1																						TGTGTGGGCAGGGGGGGTGCC	0.557													8	328	---	---	---	---					
ATP2A1	487	broad.mit.edu	37	16	28913640	28913640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr16:28913640delC	ENST00000395503.4	+	17	2641	c.2457delC	c.(2455-2457)cgfs	p.R819fs	ATP2A1_ENST00000536376.1_Frame_Shift_Del_p.R694fs|ATP2A1_ENST00000357084.3_Frame_Shift_Del_p.R819fs	NM_004320.4	NP_004311.1	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	819					apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			breast(1)|central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(7)|lung(10)|ovary(4)|pancreas(1)|prostate(2)|skin(3)|urinary_tract(2)	38						TCATGGACCGCCCCCCCCGGA	0.657													7	235	---	---	---	---					
SLC9A5	6553	broad.mit.edu	37	16	67300017	67300019	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr16:67300017_67300019delGAG	ENST00000299798.11	+	15	2172_2174	c.2107_2109delGAG	c.(2107-2109)del	p.E708del		NM_004594.2	NP_004585.1	Q14940	SL9A5_HUMAN	solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5	708					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			breast(1)|cervix(1)|endometrium(5)|kidney(4)|large_intestine(3)|lung(9)|ovary(2)|pancreas(1)|prostate(1)	27		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		CGTGGAGTCTGAGGAGGAGGAGG	0.571													13	46	---	---	---	---					
FAM98C	147965	broad.mit.edu	37	19	38899502	38899504	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-KS-A4ID-01A-11D-A257-08	TCGA-KS-A4ID-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcd021c0-b1e1-4e31-aad2-7bcaf13a9ea2	e4dd2de0-cdf9-4083-80cc-d5c82f02aa2d	g.chr19:38899502_38899504delAAG	ENST00000252530.5	+	8	1049_1051	c.1030_1032delAAG	c.(1030-1032)del	p.K349del	FAM98C_ENST00000343358.7_In_Frame_Del_p.K267del|FAM98C_ENST00000588262.1_3'UTR	NM_174905.3	NP_777565.3	Q17RN3	FA98C_HUMAN	family with sequence similarity 98, member C	349										endometrium(2)|large_intestine(3)|lung(6)|pancreas(1)|prostate(1)|skin(1)|urinary_tract(1)	15	all_cancers(60;3.95e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TTGGGGTCGCAAGAAGAAGAAGA	0.606													16	101	---	---	---	---					
