Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRXN3	9369	broad.mit.edu	37	14	79746819	79746819	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr14:79746819G>A	ENST00000281127.7	+	1	1064	c.185G>A	c.(184-186)aGc>aAc	p.S62N	NRXN3_ENST00000554719.1_Intron|NRXN3_ENST00000557594.1_Missense_Mutation_p.S62N|NRXN3_ENST00000335750.5_Intron|NRXN3_ENST00000428277.2_Missense_Mutation_p.S62N	NM_138970.3	NP_620426.2	Q9HDB5	NRX3B_HUMAN	neurexin 3	62					angiogenesis|cell adhesion	integral to membrane				NS(1)|breast(4)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(23)|lung(40)|ovary(3)|pancreas(2)|prostate(5)|skin(7)|upper_aerodigestive_tract(9)|urinary_tract(1)	104		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TTCCATGGCAGCAAGCATCAC	0.507000													4	181					0	0	1	0	0
ASNS	440	broad.mit.edu	37	7	97488559	97488559	+	Silent	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr7:97488559G>A	ENST00000175506.4	-	6	1167	c.639C>T	c.(637-639)caC>caT	p.H213H	ASNS_ENST00000422745.1_Silent_p.H192H|ASNS_ENST00000437628.1_Silent_p.H130H|ASNS_ENST00000394309.3_Silent_p.H213H|ASNS_ENST00000444334.1_Silent_p.H192H|ASNS_ENST00000455086.1_Silent_p.H130H|ASNS_ENST00000394308.3_Silent_p.H213H	NM_183356.3	NP_899199.2	P08243	ASNS_HUMAN	asparagine synthetase (glutamine-hydrolyzing)	213	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CATAGAGGGCGTGCAGGGGTA	0.433000													3	71					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	C	T	rs367060		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:16946434C>T	ENST00000412962.1	-	0	1085																											CTCAGCCTTCCGCCGGGCCAG	0.672000													4	32					0	0	1	0	0
HPS1	3257	broad.mit.edu	37	10	100189379	100189379	+	Silent	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:100189379G>A	ENST00000325103.6	-	10	1121	c.888C>T	c.(886-888)ctC>ctT	p.L296L	HPS1_ENST00000338546.5_Silent_p.L296L|HPS1_ENST00000467246.1_5'UTR|HPS1_ENST00000361490.4_Silent_p.L296L	NM_000195.3	NP_000186.2	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1	296					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(5)|liver(1)|lung(9)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	23		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		ACTCCTCAGGGAGGGAGAAGC	0.597000									Hermansky-Pudlak syndrome				12	45					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120568522	120568522	+	Silent	SNP	G	G	C			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr12:120568522G>C	ENST00000300648.6	-	56	7611	c.7599C>G	c.(7597-7599)ggC>ggG	p.G2533G		NM_006836.1	NP_006827.1	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	2533					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			NS(2)|breast(2)|cervix(2)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(13)|liver(1)|lung(36)|ovary(4)|prostate(7)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	94	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCATGAGAAAGCCCATGCCCC	0.612000													23	95					0	0	1	0	0
C10orf90	118611	broad.mit.edu	37	10	128193324	128193324	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:128193324G>A	ENST00000284694.7	-	3	565	c.445C>T	c.(445-447)Ccc>Tcc	p.P149S	C10orf90_ENST00000392694.1_Missense_Mutation_p.P102S|C10orf90_ENST00000356858.3_Missense_Mutation_p.P102S|C10orf90_ENST00000368674.1_5'UTR|C10orf90_ENST00000454341.1_Missense_Mutation_p.P149S|C10orf90_ENST00000544758.1_Missense_Mutation_p.P246S	NM_001004298.2	NP_001004298.2	Q96M02	CJ090_HUMAN	chromosome 10 open reading frame 90	149										NS(1)|breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(19)|liver(1)|lung(29)|ovary(2)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	65		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		CGGGCTGGGGGGCCCACGCGT	0.697000											OREG0020616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	70					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713773	142713773	+	RNA	SNP	C	C	G			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:142713773C>G	ENST00000369381.2	-	0	832																											TCTTTTTCCACATTGTCATTT	0.284000													4	48					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:16918653C>T	ENST00000430580.2	-	6	853		c.e6+1			NM_017940.3	NP_060410.2	Q3BBV0	NBPF1_HUMAN	neuroblastoma breakpoint family, member 1							cytoplasm									UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													4	38					0	0	1	0	0
HPS1	3257	broad.mit.edu	37	10	100189563	100189563	+	Silent	SNP	C	C	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:100189563C>T	ENST00000325103.6	-	9	1085	c.852G>A	c.(850-852)ggG>ggA	p.G284G	HPS1_ENST00000338546.5_Silent_p.G284G|HPS1_ENST00000467246.1_Intron|HPS1_ENST00000361490.4_Silent_p.G284G	NM_000195.3	NP_000186.2	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1	284					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(5)|liver(1)|lung(9)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	23		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		CTGCAGAGCTCCCCCCAGTTG	0.692000									Hermansky-Pudlak syndrome				38	192					0	0	1	0	0
TRIM65	201292	broad.mit.edu	37	17	73887267	73887267	+	Missense_Mutation	SNP	G	G	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr17:73887267G>T	ENST00000269383.3	-	6	1212	c.1147C>A	c.(1147-1149)Cac>Aac	p.H383N		NM_001256124.1|NM_173547.3	NP_001243053.1|NP_775818.2	Q6PJ69	TRI65_HUMAN	tripartite motif containing 65	383	B30.2/SPRY.					intracellular	zinc ion binding	p.H383N(2)		endometrium(1)|kidney(1)|lung(5)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	12			Epithelial(20;7.53e-06)|all cancers(21;9.11e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			CAGTAGTGGTGCCCGGCCTGG	0.672000													6	75					0.0293803	0.0293803	1	1	0
SLC6A16	28968	broad.mit.edu	37	19	49797224	49797224	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr19:49797224G>A	ENST00000454748.3	-	9	1679	c.1478C>T	c.(1477-1479)cCg>cTg	p.P493L	SLC6A16_ENST00000335875.4_Missense_Mutation_p.P493L			Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	493						integral to membrane|intracellular	neurotransmitter:sodium symporter activity			NS(1)|kidney(2)|large_intestine(5)|lung(17)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	32		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		GAAGACAGACGGAGGAAGGAA	0.493000													3	138					0	0	1	0	0
CDC7	8317	broad.mit.edu	37	1	91967356	91967356	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:91967356T>A	ENST00000428239.1	+	2	342	c.83T>A	c.(82-84)tTa>tAa	p.L28*	CDC7_ENST00000497611.1_3'UTR|CDC7_ENST00000430031.2_Nonsense_Mutation_p.L28*|CDC7_ENST00000234626.6_Nonsense_Mutation_p.L28*	NM_001134420.1	NP_001127892.1	O00311	CDC7_HUMAN	cell division cycle 7	28					cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(8)|ovary(2)|prostate(1)|stomach(2)	23		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		GAAGGCTCTTTAAAAAAAAAC	0.403000													3	77					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142231689	142231689	+	Silent	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr8:142231689G>A	ENST00000519067.1	-	2	567	c.264C>T	c.(262-264)aaC>aaT	p.N88N	SLC45A4_ENST00000517878.1_Silent_p.N139N|SLC45A4_ENST00000024061.3_Silent_p.N88N|SLC45A4_ENST00000433583.2_Silent_p.N81N			Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	139					transport	integral to membrane				breast(1)|central_nervous_system(1)|endometrium(5)|kidney(2)|large_intestine(6)|lung(9)|ovary(3)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	31	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TGGCAGAGCCGTTAAGGAAAA	0.612000													3	44					0	0	1	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr4:146059041A>G	ENST00000454497.2	-	21	2828	c.2691T>C	c.(2689-2691)caT>caC	p.H897H	OTUD4_ENST00000447906.2_Silent_p.H962H|OTUD4_ENST00000455611.2_Intron	NM_001102653.1	NP_001096123.1	Q01804	OTUD4_HUMAN	OTU domain containing 4	961							protein binding			breast(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(9)|lung(10)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	33	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478000													3	156					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713774	142713774	+	RNA	SNP	A	A	G			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:142713774A>G	ENST00000369381.2	-	0	831																											CTTTTTCCACATTGTCATTTT	0.284000													3	49					0	0	1	0	0
HR	55806	broad.mit.edu	37	8	21984718	21984718	+	Missense_Mutation	SNP	T	T	C			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr8:21984718T>C	ENST00000381418.4	-	3	2717	c.1237A>G	c.(1237-1239)Agg>Ggg	p.R413G	HR_ENST00000312841.8_Missense_Mutation_p.R413G	NM_005144.4	NP_005135.2	O43593	HAIR_HUMAN	hair growth associated	413							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(12)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)	27		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CTGCCTGCCCTTTTGAGGGCC	0.662000													3	101					0	0	1	0	0
DNAAF3	352909	broad.mit.edu	37	19	55677164	55677164	+	Missense_Mutation	SNP	T	T	C			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr19:55677164T>C	ENST00000455045.1	-	1	51	c.52A>G	c.(52-54)Att>Gtt	p.I18V	DNAAF3_ENST00000527223.2_Intron|DNAAF3_ENST00000524407.2_Intron|CTD-2587H24.5_ENST00000591665.1_RNA|DNAAF3_ENST00000391720.4_Intron			Q8N9W5	CS051_HUMAN	dynein, axonemal, assembly factor 3	0																	ggttttagaatttcaatccct	0.567000													2	6					0	0	1	0	0
NLRC5	84166	broad.mit.edu	37	16	57115523	57115523	+	Splice_Site	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:57115523G>A	ENST00000436936.1	+	48	5778		c.e48+1		NLRC5_ENST00000308149.7_Splice_Site|NLRC5_ENST00000262510.6_Splice_Site|NLRC5_ENST00000539144.1_Splice_Site			Q86WI3	NLRC5_HUMAN	NLR family, CARD domain containing 5						defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			NS(2)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(16)|lung(21)|ovary(8)|prostate(1)|skin(6)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	75		all_neural(199;0.225)				AAGTCATCCGGTAACAGAGGC	0.627000													4	132					0	0	1	0	0
STK32B	55351	broad.mit.edu	37	4	5500727	5500727	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr4:5500727G>A	ENST00000282908.5	+	12	1584	c.1162G>A	c.(1162-1164)Gga>Aga	p.G388R	STK32B_ENST00000508728.1_3'UTR|STK32B_ENST00000510398.1_Missense_Mutation_p.G341R|STK32B_ENST00000512636.1_Missense_Mutation_p.G311R	NM_018401.1	NP_060871.1	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	388							ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(10)|lung(16)|prostate(1)|skin(2)|upper_aerodigestive_tract(3)	39						CAGCCGAGGGGGAGGCCAGGC	0.627000													3	55					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155317613	155317613	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:155317613G>A	ENST00000368346.3	-	20	8291	c.7652C>T	c.(7651-7653)tCa>tTa	p.S2551L	ASH1L_ENST00000392403.3_Missense_Mutation_p.S2546L			Q9NR48	ASH1L_HUMAN	ash1 (absent, small, or homeotic)-like (Drosophila)	2551					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			autonomic_ganglia(1)|breast(4)|central_nervous_system(1)|endometrium(12)|kidney(13)|large_intestine(28)|lung(39)|ovary(2)|pancreas(1)|prostate(6)|skin(11)|upper_aerodigestive_tract(2)|urinary_tract(4)	124	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AATCTGGGCTGATGCCTCATG	0.483000													3	150					0	0	1	0	0
CX3CL1	6376	broad.mit.edu	37	16	57416149	57416149	+	Silent	SNP	C	C	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:57416149C>T	ENST00000565912.1	+	2	2991	c.285C>T	c.(283-285)ggC>ggT	p.G95G	CX3CL1_ENST00000006053.6_Silent_p.G133G|CX3CL1_ENST00000564948.1_3'UTR|CX3CL1_ENST00000563383.1_Silent_p.G139G			P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1	133	Chemokine.				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity			breast(1)|endometrium(1)|large_intestine(1)|lung(2)	5						AAGCCACAGGCGAAAGCAGTA	0.667000													14	37					0	0	1	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43654238	43654238	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:43654238G>A	ENST00000374466.3	+	3	1072	c.737G>A	c.(736-738)aGa>aAa	p.R246K	CSGALNACT2_ENST00000374464.1_Missense_Mutation_p.R246K	NM_018590.3	NP_061060.3	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate N-acetylgalactosaminyltransferase 2	246					chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			endometrium(12)|kidney(3)|large_intestine(5)|lung(16)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	42						ACGGAATATAGACATGTGACC	0.393000													19	75					0	0	1	0	0
ZNF878	729747	broad.mit.edu	37	19	12155673	12155673	+	Missense_Mutation	SNP	A	A	C			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr19:12155673A>C	ENST00000602107.1	-	5	683	c.684T>G	c.(682-684)agT>agG	p.S228R	ZNF878_ENST00000547628.1_Missense_Mutation_p.S181R|CTD-2006C1.2_ENST00000591898.1_RNA|CTD-2006C1.2_ENST00000591838.1_RNA|CTD-2006C1.2_ENST00000476474.1_RNA|CTD-2006C1.10_ENST00000547473.1_Intron			C9JN71	ZN878_HUMAN	zinc finger protein 878	181					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			cervix(1)|endometrium(1)|kidney(1)|lung(4)|urinary_tract(1)	8						AACTGGGAAAACTGAATGCTT	0.403000													6	261					0	0	1	0	0
LINC00969	0	broad.mit.edu	37	3	195410640	195410640	+	RNA	SNP	T	T	C	rs6583273	by1000genomes	TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr3:195410640T>C	ENST00000445430.1	+	0	1837																											TTGATGAGTATGATCACTCCA	0.468000													2	13					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055315	72055315	+	Silent	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr14:72055315G>A	ENST00000555818.1	+	2	1074	c.726G>A	c.(724-726)aaG>aaA	p.K242K	SIPA1L1_ENST00000381232.3_Silent_p.K242K|SIPA1L1_ENST00000358550.2_Silent_p.K242K	NM_015556.1	NP_056371.1	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like 1	242					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			NS(1)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(11)|kidney(1)|large_intestine(22)|liver(2)|lung(25)|ovary(3)|prostate(3)|skin(3)|stomach(1)	78				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CTCCAACCAAGCTCAGTGACT	0.423000													6	60					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38976750	38976750	+	Missense_Mutation	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr19:38976750G>A	ENST00000355481.4	+	34	5586	c.5455G>A	c.(5455-5457)Gtg>Atg	p.V1819M	RYR1_ENST00000359596.3_Missense_Mutation_p.V1819M|RYR1_ENST00000360985.3_Missense_Mutation_p.V1819M	NM_000540.2|NM_001042723.1	NP_000531.2|NP_001036188.1	P21817	RYR1_HUMAN	ryanodine receptor 1 (skeletal)	1819	6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGGGGAGGCGGTGCGCGACGG	0.706000													3	116					0	0	1	0	0
PRKAA1	5562	broad.mit.edu	37	5	40767657	40767657	+	Silent	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr5:40767657G>A	ENST00000397128.2	-	6	740	c.732C>T	c.(730-732)acC>acT	p.T244T	PRKAA1_ENST00000354209.3_Silent_p.T259T	NM_006251.5|NM_206907.3	NP_006242.5|NP_996790.3	Q13131	AAPK1_HUMAN	protein kinase, AMP-activated, alpha 1 catalytic subunit	244	Protein kinase.				activation of MAPK activity|cell cycle arrest|cholesterol biosynthetic process|fatty acid biosynthetic process|insulin receptor signaling pathway|negative regulation of glucosylceramide biosynthetic process|positive regulation of anti-apoptosis|positive regulation of cholesterol biosynthetic process|regulation of fatty acid oxidation|response to hypoxia	cytosol	ATP binding|cAMP-dependent protein kinase activity|metal ion binding|protein binding			breast(1)	1					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Phenformin(DB00914)	AATATTGAGGGGTATAGAAGA	0.388000													4	82					0	0	1	0	0
HHEX	3087	broad.mit.edu	37	10	94452181	94452181	+	Missense_Mutation	SNP	G	G	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:94452181G>T	ENST00000282728.5	+	2	2217	c.418G>T	c.(418-420)Ggc>Tgc	p.G140C	HHEX_ENST00000472590.2_5'UTR|HHEX_ENST00000492654.2_5'UTR	NM_002729.4	NP_002720.1	Q03014	HHEX_HUMAN	hematopoietically expressed homeobox	140					anterior/posterior pattern formation|B cell differentiation|cell cycle|DNA conformation change|negative regulation of angiogenesis|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of vascular endothelial growth factor receptor signaling pathway|poly(A)+ mRNA export from nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|Wnt receptor signaling pathway	cytoplasm|nucleus|protein-DNA complex	DNA bending activity|eukaryotic initiation factor 4E binding|protein homodimerization activity|repressing transcription factor binding|sequence-specific DNA binding|TBP-class protein binding|transcription regulatory region DNA binding			kidney(2)|large_intestine(2)|lung(5)|ovary(1)	10						AAGGAAAGGCGGCCAGGTGAG	0.587000													20	59					1.96895e-08	2.13771e-08	1	1	0
RP11-798G7.5	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs149697015	by1000genomes	TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr17:43587569G>C	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							aactccgtctgaaaagaaaag	0.443000													4	31					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114270000	114270000	+	Silent	SNP	G	G	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr7:114270000G>A	ENST00000393500.3	+	11	1132	c.312G>A	c.(310-312)caG>caA	p.Q104Q	FOXP2_ENST00000393498.2_Silent_p.Q159Q|AC020606.1_ENST00000580664.1_RNA|FOXP2_ENST00000360232.4_Silent_p.Q179Q|FOXP2_ENST00000393491.3_Silent_p.Q87Q|FOXP2_ENST00000350908.4_Silent_p.Q179Q|FOXP2_ENST00000408937.3_Silent_p.Q204Q|FOXP2_ENST00000378237.3_Silent_p.Q179Q|FOXP2_ENST00000390668.3_Silent_p.Q203Q|FOXP2_ENST00000393489.3_Silent_p.Q87Q|FOXP2_ENST00000403559.4_Silent_p.Q196Q|FOXP2_ENST00000393494.2_Silent_p.Q179Q			O15409	FOXP2_HUMAN	forkhead box P2	179	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding	p.Q204Q(1)		breast(3)|endometrium(7)|kidney(4)|large_intestine(7)|lung(22)|ovary(4)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	52						agcaacaacagcagcagcagc	0.498000													3	44					0	0	1	0	0
RP11-435B5.5	0	broad.mit.edu	37	1	143391935	143391936	+	RNA	INS	-	-	TG			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:143391935_143391936insTG	ENST00000428624.1	+	0	2065				RP11-435B5.4_ENST00000423249.1_lincRNA																							ATATATATATATAAAGAGATTG	0.252													4	6	---	---	---	---					
ANKRD20A8P	0	broad.mit.edu	37	2	95513688	95513689	+	RNA	INS	-	-	TA			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr2:95513688_95513689insTA	ENST00000432432.2	-	0	850					NR_040113.1																						CTCACCTAATGTATAAGATGGA	0.327													7	101	---	---	---	---					
HMMR	3161	broad.mit.edu	37	5	162917425	162917426	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr5:162917425_162917426insA	ENST00000416990.2	+	17	2144_2145	c.1647_1648insA	c.(1645-1650)gcaaaafs	p.AK549fs	HMMR_ENST00000358715.3_Frame_Shift_Ins_p.AK663fs|RP11-80G7.1_ENST00000514724.2_RNA|RP11-80G7.1_ENST00000521666.1_RNA|HMMR_ENST00000432118.2_Frame_Shift_Ins_p.AK577fs|HMMR_ENST00000353866.3_Frame_Shift_Ins_p.AK648fs|HMMR_ENST00000393915.4_Frame_Shift_Ins_p.AK664fs			O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor (RHAMM)	663						cell surface|cytoplasm	hyaluronic acid binding			cervix(1)|kidney(3)|large_intestine(6)|lung(9)|pancreas(1)|prostate(1)|skin(1)|stomach(1)	23	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		GTCAGCTTGCTAAAAAAAAACA	0.307													9	65	---	---	---	---					
ERICH1-AS1	0	broad.mit.edu	37	8	845007	845008	+	RNA	INS	-	-	G			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr8:845007_845008insG	ENST00000524139.1	+	0	151				ERICH1-AS1_ENST00000578889.1_RNA|ERICH1-AS1_ENST00000577187.1_RNA|ERICH1-AS1_ENST00000522092.1_RNA																							ggtggctggcagggcagggtgg	0.698													2	4	---	---	---	---					
AE000661.37	0	broad.mit.edu	37	14	22933391	22933391	+	RNA	DEL	C	C	-	rs36090939		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr14:22933391delC	ENST00000514473.2	-	0	225				AE000661.37_ENST00000556777.1_RNA|TRDC_ENST00000390477.2_RNA																							TTAGAAATGGCTAAGAAACCA	0.408													4	3	---	---	---	---					
C16orf71	146562	broad.mit.edu	37	16	4796953	4796955	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:4796953_4796955delGAG	ENST00000299320.5	+	8	1685_1687	c.1207_1209delGAG	c.(1207-1209)del	p.E409del	RP11-127I20.7_ENST00000588099.1_RNA|C16orf71_ENST00000590191.1_In_Frame_Del_p.E426del	NM_139170.2	NP_631909.2	Q8IYS4	CP071_HUMAN	chromosome 16 open reading frame 71	409								p.E403delE(1)		breast(1)|central_nervous_system(1)|large_intestine(4)|lung(4)|ovary(1)	11						CTCTGACAGTGAGGAGGAGGAGG	0.611													3	6	---	---	---	---					
CTD-3037G24.3	0	broad.mit.edu	37	16	12681775	12681775	+	RNA	DEL	T	T	-			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:12681775delT	ENST00000564505.1	-	0	307																											CCCTCCTGCCTTTTTTCTGGG	0.463													2	4	---	---	---	---					
ROCK1P1	0	broad.mit.edu	37	18	112519	112520	+	RNA	INS	-	-	A	rs140158594	by1000genomes	TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr18:112519_112520insA	ENST00000576266.1	+	0	153_154																											CCAGCTCCCCCGGGGCCTCCGT	0.530													2	4	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chrX:152087570_152087572delGAG	ENST00000535861.1	+	7	523_525	c.475_477delGAG	c.(475-477)del	p.E165del	ZNF185_ENST00000370270.1_In_Frame_Del_p.E25del|ZNF185_ENST00000370268.4_In_Frame_Del_p.E165del|ZNF185_ENST00000449285.2_In_Frame_Del_p.E165del|ZNF185_ENST00000324823.6_In_Frame_Del_p.E30del|ZNF185_ENST00000318504.7_In_Frame_Del_p.E165del|ZNF185_ENST00000318529.8_In_Frame_Del_p.E30del|ZNF185_ENST00000539731.1_In_Frame_Del_p.E165del	NM_001178106.1	NP_001171577.1	O15231	ZN185_HUMAN	zinc finger protein 185 (LIM domain)	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			NS(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(3)|ovary(3)	12	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.596													9	52	---	---	---	---					
