Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC15A3	51296	broad.mit.edu	37	11	60714262	60714262	+	Missense_Mutation	SNP	C	C	A	rs142952480	byFrequency	TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr11:60714262C>A	ENST00000227880.3	-	2	823	c.590G>T	c.(589-591)cGc>cTc	p.R197L		NM_016582.2	NP_057666.1	Q8IY34	S15A3_HUMAN	solute carrier family 15 (oligopeptide transporter), member 3	197					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity	p.R197L(1)		central_nervous_system(1)|kidney(4)|large_intestine(1)|lung(9)|prostate(2)	17						GTTGAAGAAGCGGCGGGTGGC	0.597000													4	203					0.184627	0.184627	1	1	0
APOL5	80831	broad.mit.edu	37	22	36122619	36122619	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr22:36122619G>A	ENST00000249044.2	+	3	504	c.504G>A	c.(502-504)atG>atA	p.M168I		NM_030642.1	NP_085145.1	Q9BWW9	APOL5_HUMAN	apolipoprotein L, 5	168					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(3)|large_intestine(4)|lung(6)|skin(2)|urinary_tract(1)	19						GCAGTCTCATGCTCTCAGCAA	0.537000													19	71					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169108863	169108863	+	Missense_Mutation	SNP	G	G	C			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr5:169108863G>C	ENST00000256935.8	+	7	666	c.586G>C	c.(586-588)Gag>Cag	p.E196Q		NM_004946.2	NP_004937.1	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	196					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			NS(2)|breast(5)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(42)|liver(2)|lung(63)|ovary(5)|pancreas(3)|prostate(7)|skin(5)|stomach(2)|upper_aerodigestive_tract(3)	160	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TAAAATCACAGAGCGTATCAA	0.373000													6	111					0	0	1	0	0
C16orf87	388272	broad.mit.edu	37	16	46843541	46843541	+	Missense_Mutation	SNP	G	G	C			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr16:46843541G>C	ENST00000285697.4	-	3	581	c.320C>G	c.(319-321)tCt>tGt	p.S107C	C16orf87_ENST00000564250.1_5'UTR|C16orf87_ENST00000394806.2_Intron	NM_001001436.2	NP_001001436.1	Q6PH81	CP087_HUMAN	chromosome 16 open reading frame 87	107										large_intestine(4)|urinary_tract(1)	5						TTTTTTGGCAGATGCACTTTT	0.338000													4	169					0	0	1	0	0
D86994.2	0	broad.mit.edu	37	22	23006961	23006961	+	RNA	SNP	C	C	T			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr22:23006961C>T	ENST00000385099.1	+	0	64																											GGCTCTGCTCCTCCTCACCCT	0.627000													4	9					0	0	1	0	0
PIK3CD	5293	broad.mit.edu	37	1	9777593	9777593	+	Splice_Site	SNP	A	A	G			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr1:9777593A>G	ENST00000536656.1	+	8	1033		c.e8-1		PIK3CD_ENST00000361110.2_Splice_Site|PIK3CD_ENST00000377346.4_Splice_Site			O00329	PK3CD_HUMAN	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta						phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(12)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)	31	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		CCCGGCCCCCAGCCTTCCTCT	0.647000													11	39					0	0	1	0	0
EML4	27436	broad.mit.edu	37	2	42510053	42510053	+	Silent	SNP	A	A	G			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr2:42510053A>G	ENST00000318522.5	+	8	1144	c.882A>G	c.(880-882)ctA>ctG	p.L294L	EML4_ENST00000402711.2_Silent_p.L236L|EML4_ENST00000401738.3_Silent_p.L305L	NM_019063.3	NP_061936.2	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	294					microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(543)	NS(2)|breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	12						TAGTAGTACTATTTAATTATG	0.378000			T	ALK	NSCLC								5	79					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913377		TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr7:140453136A>T	ENST00000288602.6	-	15	1859	c.1799T>A	c.(1798-1800)gTg>gAg	p.V600E		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	v-raf murine sarcoma viral oncogene homolog B	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(15453)|p.V600K(252)|p.V600R(44)|p.V600D(16)|p.V600A(12)|p.V600_K601>E(12)|p.V600G(11)|p.T599_R603>I(2)|p.V600Q(2)|p.V600_S605>EK(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insDFGLAT(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	NS(588)|adrenal_gland(3)|autonomic_ganglia(3)|biliary_tract(29)|bone(7)|breast(21)|central_nervous_system(99)|cervix(6)|endometrium(33)|eye(72)|gastrointestinal_tract_(site_indeterminate)(2)|genital_tract(4)|haematopoietic_and_lymphoid_tissue(436)|kidney(3)|large_intestine(6953)|liver(17)|lung(192)|oesophagus(4)|ovary(275)|pancreas(15)|pituitary(1)|prostate(25)|salivary_gland(1)|skin(6285)|small_intestine(12)|soft_tissue(40)|stomach(11)|testis(7)|thyroid(12220)|upper_aerodigestive_tract(13)|urinary_tract(3)	27380	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600D(K029AX_SKIN)|V600D(WM115_SKIN)|V600D(WM2664_SKIN)|V600E(8505C_THYROID)|V600E(A101D_SKIN)|V600E(A2058_SKIN)|V600E(A375_SKIN)|V600E(A673_BONE)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(BCPAP_THYROID)|V600E(BHT101_THYROID)|V600E(BT474_BREAST)|V600E(C32_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(COLO205_LARGE_INTESTINE)|V600E(COLO679_SKIN)|V600E(COLO741_SKIN)|V600E(COLO783_SKIN)|V600E(COLO800_SKIN)|V600E(COLO818_SKIN)|V600E(COLO829_SKIN)|V600E(COLO849_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(DU4475_BREAST)|V600E(ES2_OVARY)|V600E(G361_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(HS294T_SKIN)|V600E(HS695T_SKIN)|V600E(HS939T_SKIN)|V600E(IGR1_SKIN)|V600E(IGR37_SKIN)|V600E(IGR39_SKIN)|V600E(K029AX_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(LOXIMVI_SKIN)|V600E(MALME3M_SKIN)|V600E(MELHO_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(RKO_LARGE_INTESTINE)|V600E(RPMI7951_SKIN)|V600E(RVH421_SKIN)|V600E(SH4_SKIN)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(SKHEP1_LIVER)|V600E(SKMEL24_SKIN)|V600E(SKMEL28_SKIN)|V600E(SKMEL5_SKIN)|V600E(SW1417_LARGE_INTESTINE)|V600E(UACC257_SKIN)|V600E(UACC62_SKIN)|V600E(WM793_SKIN)|V600E(WM88_SKIN)|V600E(WM983B_SKIN)	61	"""Mis, T, O"""	"""AKAP9, KIAA1549"""	"""melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma"""		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				7	46					0	0	1	0	0
TUBB8P7	0	broad.mit.edu	37	16	90162462	90162462	+	RNA	SNP	A	A	G			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr16:90162462A>G	ENST00000567960.1	+	0	1198				TUBB8P7_ENST00000564451.1_RNA														p.T398T(1)									ACTGGTACACAGGCGAGGGCA	0.522000													4	100					0	0	1	0	0
DDX23	9416	broad.mit.edu	37	12	49229903	49229903	+	Splice_Site	SNP	C	C	T			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr12:49229903C>T	ENST00000308025.3	-	11	1462		c.e11+1			NM_004818.2	NP_004809.2	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23							catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			NS(1)|cervix(1)|kidney(4)|large_intestine(6)|lung(17)|ovary(1)|prostate(1)|skin(2)|urinary_tract(3)	36						GCTGACCTCACCTGTCAATTT	0.483000													49	169					0	0	1	0	0
STXBP5	0	broad.mit.edu	37	6	147685192	147685192	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr6:147685192C>T	ENST00000367481.3	+	23	2971	c.2863C>T	c.(2863-2865)Cgg>Tgg	p.R955W	STXBP5_ENST00000321680.6_Missense_Mutation_p.R991W|STXBP5_ENST00000179882.6_Missense_Mutation_p.R646W|STXBP5_ENST00000367480.3_Missense_Mutation_p.R938W	NM_139244.4	NP_640337.3	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn)	991					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding	p.R955W(1)|p.R991W(1)		breast(2)|endometrium(4)|kidney(3)|large_intestine(6)|lung(21)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	42		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		TACCAATATGCGGATAGCCAG	0.363000													6	184					0	0	1	0	0
RTBDN	83546	broad.mit.edu	37	19	12940686	12940686	+	Silent	SNP	G	G	T	rs149960614		TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr19:12940686G>T	ENST00000589272.1	-	3	533	c.204C>A	c.(202-204)gcC>gcA	p.A68A	CTD-2265O21.3_ENST00000588469.1_RNA|RTBDN_ENST00000592204.1_Silent_p.A46A|RTBDN_ENST00000458671.2_Silent_p.A36A|RTBDN_ENST00000322912.5_Silent_p.A68A|RTBDN_ENST00000393233.2_5'UTR			Q9BSG5	RTBDN_HUMAN	retbindin	36						extracellular region				kidney(1)|large_intestine(5)|liver(1)|lung(4)|prostate(1)	12						GCTGGGACCTGGCTTGGAGTG	0.637000													9	32					2.74318e-10	3.06591e-10	1	1	0
SPTA1	6708	broad.mit.edu	37	1	158615133	158615133	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr1:158615133C>T	ENST00000368148.3	-	29	4219	c.4039G>A	c.(4039-4041)Gcc>Acc	p.A1347T	SPTA1_ENST00000368147.3_Missense_Mutation_p.A1347T	NM_003126.2	NP_003117.2	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1 (elliptocytosis 2)	1347					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			NS(3)|breast(7)|cervix(1)|endometrium(22)|kidney(9)|large_intestine(29)|liver(2)|lung(183)|ovary(5)|prostate(18)|skin(11)|soft_tissue(1)|stomach(1)|upper_aerodigestive_tract(9)|urinary_tract(6)	307	all_hematologic(112;0.0378)					TCCTCTAAGGCCTGGAAGGTG	0.473000													18	40					0	0	1	0	0
AJ271736.10	0	broad.mit.edu	37	X	155252868	155252868	+	RNA	SNP	T	T	A			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chrX:155252868T>A	ENST00000285718.7	+	0	819				WASH6P_ENST00000461007.1_RNA														p.P304P(5)									TAGCCGAGCCTCTCAAGGCAG	0.632000													5	9					0	0	1	0	0
D86994.2	0	broad.mit.edu	37	22	23006960	23006960	+	RNA	SNP	C	C	A			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr22:23006960C>A	ENST00000385099.1	+	0	63																											GGGCTCTGCTCCTCCTCACCC	0.627000													4	9					0.00909568	0.009601	1	1	0
ANKRD13D	338692	broad.mit.edu	37	11	67059566	67059566	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr11:67059566C>T	ENST00000447274.2	+	6	1560	c.385C>T	c.(385-387)Cgg>Tgg	p.R129W	ANKRD13D_ENST00000514166.1_Missense_Mutation_p.R129W|ANKRD13D_ENST00000308440.6_Missense_Mutation_p.R129W|ANKRD13D_ENST00000511455.2_Missense_Mutation_p.R216W			Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	129										endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(3)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GGCCGCCATGCGGCCCAGCGA	0.632000													4	108					0	0	1	0	0
AC018890.6	0	broad.mit.edu	37	2	175585079	175585079	+	RNA	DEL	A	A	-			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr2:175585079delA	ENST00000442996.1	+	0	217																											TTTCATTCTCAAAAAAAAAAA	0.368											OREG0015078	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
DGKB	1607	broad.mit.edu	37	7	14652983	14652983	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr7:14652983delC	ENST00000403951.2	-	16	1762	c.1343delG	c.(1342-1344)gtfs	p.G449fs	DGKB_ENST00000407950.1_Frame_Shift_Del_p.G441fs|DGKB_ENST00000406247.3_Frame_Shift_Del_p.G449fs|DGKB_ENST00000399322.3_Frame_Shift_Del_p.G449fs|DGKB_ENST00000403963.1_5'UTR|DGKB_ENST00000402815.1_Frame_Shift_Del_p.G448fs|DGKB_ENST00000258767.5_Frame_Shift_Del_p.G449fs|DGKB_ENST00000444700.2_Frame_Shift_Del_p.G430fs			Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta 90kDa	449	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|liver(1)|lung(34)|ovary(4)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	72					Phosphatidylserine(DB00144)	TTGTTTTCCACCACTTTTGGG	0.318													2	4	---	---	---	---					
RP11-274B21.1	0	broad.mit.edu	37	7	128210235	128210235	+	RNA	DEL	T	T	-			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr7:128210235delT	ENST00000605862.1	+	0	189																											gttttagttcttTTTTTTTTT	0.443													3	6	---	---	---	---					
EP400	57634	broad.mit.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAG	rs113304321	by1000genomes	TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr12:132547093_132547094insCAG	ENST00000333577.4	+	48	8398_8399	c.8289_8290insCAG	c.(8287-8292)caagca>caCAGagca	p.2763_2763Q>HR	EP400_ENST00000389562.2_In_Frame_Ins_p.2726_2726Q>HR|EP400_ENST00000389561.2_In_Frame_Ins_p.2727_2727Q>HR|EP400_ENST00000332482.4_In_Frame_Ins_p.2690_2690Q>HR|EP400_ENST00000330386.6_In_Frame_Ins_p.2646_2646Q>HR			Q96L91	EP400_HUMAN	E1A binding protein p400	2763	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2726Q(9)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcaacaacagcagcagca	0.564													19	39	---	---	---	---					
LSM14A	26065	broad.mit.edu	37	19	34710340	34710340	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E8-A414-01A-11D-A23M-08	TCGA-E8-A414-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25dd3d5c-8dbe-4adc-aa69-92fb7555b60b	ef1cce9d-bdc5-4303-9def-d252d105a958	g.chr19:34710340delC	ENST00000544216.3	+	7	903	c.826delC	c.(826-828)ggfs	p.R276fs	LSM14A_ENST00000540746.2_Frame_Shift_Del_p.R235fs|LSM14A_ENST00000433627.5_Frame_Shift_Del_p.R276fs	NM_015578.2	NP_056393.2	Q8ND56	LS14A_HUMAN	LSM14A, SCD6 homolog A (S. cerevisiae)	276					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				breast(1)|endometrium(4)|kidney(1)|large_intestine(8)|lung(7)|skin(1)	22	Esophageal squamous(110;0.162)					TGGGGGTCATCGGGGTGGCAG	0.438													7	130	---	---	---	---					
