Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KMT2D	8085	broad.mit.edu	37	12	49445334	49445334	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr12:49445334G>A	ENST00000301067.7	-	10	2131	c.2132C>T	c.(2131-2133)cCg>cTg	p.P711L		NM_003482.3	NP_003473.3			lysine (K)-specific methyltransferase 2D																		CGAGTCCTCCGGTGGTGGGGA	0.672000													16	81					0	0	1	0	0
DOCK7	85440	broad.mit.edu	37	1	63044512	63044512	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr1:63044512G>A	ENST00000251157.5	-	17	2030	c.1997C>T	c.(1996-1998)cCa>cTa	p.P666L	DOCK7_ENST00000340370.5_Missense_Mutation_p.P666L	NM_001271999.1	NP_001258928.1	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	666	DHR-1.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(8)|kidney(6)|large_intestine(19)|lung(42)|ovary(2)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	92						ATATCCAACTGGTGTTTCAAG	0.313000													5	29					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155311968	155311968	+	Missense_Mutation	SNP	T	T	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr3:155311968T>A	ENST00000460012.1	-	4	499	c.142A>T	c.(142-144)Att>Ttt	p.I48F	PLCH1_ENST00000447496.2_Missense_Mutation_p.I66F|PLCH1_ENST00000414191.1_Missense_Mutation_p.I48F|PLCH1_ENST00000334686.6_Missense_Mutation_p.I48F|PLCH1_ENST00000340059.7_Missense_Mutation_p.I66F|PLCH1_ENST00000494598.1_Missense_Mutation_p.I66F			Q4KWH8	PLCH1_HUMAN	phospholipase C, eta 1	66	PH.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			NS(3)|breast(3)|endometrium(9)|kidney(4)|large_intestine(20)|lung(45)|ovary(2)|prostate(5)|skin(8)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(4)	107			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			ATGGAATCAATAAGTACTGTG	0.403000													18	32					0	0	1	0	0
SLC22A6	9356	broad.mit.edu	37	11	62744805	62744805	+	Missense_Mutation	SNP	G	G	C			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr11:62744805G>C	ENST00000377871.3	-	9	1682	c.1416C>G	c.(1414-1416)agC>agG	p.S472R	SLC22A6_ENST00000421062.2_Intron|SLC22A6_ENST00000360421.4_Missense_Mutation_p.S472R|SLC22A6_ENST00000458333.2_Intron	NM_004790.4|NM_153278.2	NP_004781.2|NP_695010.1	Q4U2R8	S22A6_HUMAN	solute carrier family 22 (organic anion transporter), member 6	472					alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding			breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|lung(18)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	36						TCACCAGTGGGCTCACGATGC	0.622000													7	36					0	0	1	0	0
BTN3A3	10384	broad.mit.edu	37	6	26452015	26452015	+	Missense_Mutation	SNP	A	A	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr6:26452015A>T	ENST00000244519.2	+	11	1374	c.1131A>T	c.(1129-1131)agA>agT	p.R377S	BTN3A3_ENST00000361232.3_Missense_Mutation_p.R328S|BTN3A3_ENST00000339789.4_Missense_Mutation_p.R335S	NM_006994.4	NP_008925.1	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3	377	B30.2/SPRY.					integral to membrane				cervix(1)|endometrium(3)|large_intestine(4)|liver(1)|lung(15)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	30						ACCCTGAGAGATTTGAATGGC	0.537000													12	55					0	0	1	0	0
VTRNA2-1	0	broad.mit.edu	37	5	135416184	135416184	+	RNA	SNP	A	A	G			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr5:135416184A>G	ENST00000602301.1	-	0	102					NR_030583.2																						AATTTATTGCATAAAAGGGTC	0.433000													20	43					0	0	1	0	0
MALAT1	0	broad.mit.edu	37	11	65272954	65272954	+	RNA	SNP	C	C	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr11:65272954C>T	ENST00000534336.1	+	0	7722					NR_002819.2																						AGGGGGAAAGCGGGCAACCAC	0.478000													14	69					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr12:132547087G>A	ENST00000333577.4	+	48	8392	c.8283G>A	c.(8281-8283)caG>caA	p.Q2761Q	EP400_ENST00000330386.6_Silent_p.Q2644Q|EP400_ENST00000389561.2_Silent_p.Q2725Q|EP400_ENST00000332482.4_Silent_p.Q2688Q|EP400_ENST00000389562.2_Silent_p.Q2724Q			Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2724Q(16)|p.Q2725Q(1)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.562000													4	59					0	0	1	0	0
POU2AF1	5450	broad.mit.edu	37	11	111228203	111228203	+	Silent	SNP	G	G	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr11:111228203G>A	ENST00000393067.3	-	4	937	c.423C>T	c.(421-423)acC>acT	p.T141T		NM_006235.2	NP_006226.2	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	141			T -> A (in dbSNP:rs1042750).		humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			breast(1)|kidney(2)|lung(2)	5		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		GAGAGGCATAGGTCAACACTG	0.577000			T	BCL6	NHL								11	49					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541674	55541674	+	Missense_Mutation	SNP	A	A	G			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr11:55541674A>G	ENST00000361760.1	+	1	761	c.761A>G	c.(760-762)cAt>cGt	p.H254R		NM_001001967.1	NP_001001967.1	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D, member 13	254					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|liver(1)|lung(20)|ovary(1)|pancreas(2)|skin(2)|stomach(1)|urinary_tract(1)	40		all_epithelial(135;0.196)				ACTATCTTCCATGGAACTATC	0.443000													22	50					0	0	1	0	0
NPAP1	23742	broad.mit.edu	37	15	24921341	24921341	+	Silent	SNP	A	A	G			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr15:24921341A>G	ENST00000329468.2	+	1	801	c.327A>G	c.(325-327)ggA>ggG	p.G109G		NM_018958.2	NP_061831.2			nuclear pore associated protein 1																		CGAGGTTTGGACACCCCAGTT	0.677000													9	56					0	0	1	0	0
LNPEP	4012	broad.mit.edu	37	5	96358148	96358148	+	Missense_Mutation	SNP	A	A	G			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr5:96358148A>G	ENST00000231368.5	+	14	3213	c.2521A>G	c.(2521-2523)Aaa>Gaa	p.K841E	LNPEP_ENST00000395770.3_Missense_Mutation_p.K827E	NM_005575.2	NP_005566.2	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase	841					cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(9)|lung(10)|ovary(3)|skin(1)|urinary_tract(1)	34		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		TACTGCCATGAAACTGTTTGA	0.443000													12	22					0	0	1	0	0
ARSK	153642	broad.mit.edu	37	5	94891099	94891099	+	Silent	SNP	C	C	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr5:94891099C>T	ENST00000380009.4	+	1	322	c.117C>T	c.(115-117)agC>agT	p.S39S	ARSK_ENST00000504763.1_Silent_p.S39S	NM_198150.2	NP_937793.1	Q6UWY0	ARSK_HUMAN	arylsulfatase family, member K	39						extracellular region	arylsulfatase activity|metal ion binding			endometrium(2)|kidney(1)|large_intestine(3)|lung(8)|pancreas(1)|skin(1)	16		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		TGGTCGTGAGCGACTCCTTCG	0.701000													5	22					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr20:33345744C>T	ENST00000374796.2	-	8	3377	c.807G>A	c.(805-807)caG>caA	p.Q269Q	NCOA6_ENST00000359003.2_Silent_p.Q269Q			Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	269	CREBBP-binding region.|Gln-rich.|NCOA1-binding region.|TBP/GTF2A-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding	p.Q269Q(15)		NS(2)|breast(6)|central_nervous_system(3)|cervix(1)|endometrium(9)|kidney(8)|large_intestine(16)|lung(37)|ovary(4)|prostate(5)|skin(13)|upper_aerodigestive_tract(2)|urinary_tract(1)	107						gctgctgctgctgttgttgtt	0.537000													4	50					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179399347	179399347	+	Missense_Mutation	SNP	A	A	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr2:179399347A>T	ENST00000589042.1	-	358	102219	c.101995T>A	c.(101995-101997)Tgg>Agg	p.W33999R	TTN-AS1_ENST00000589842.1_RNA|TTN-AS1_ENST00000592836.1_RNA|TTN-AS1_ENST00000589391.1_RNA|TTN_ENST00000359218.5_Missense_Mutation_p.W25059R|TTN-AS1_ENST00000588244.1_RNA|TTN-AS1_ENST00000589434.1_RNA|TTN_ENST00000460472.2_Missense_Mutation_p.W24934R|TTN-AS1_ENST00000442329.2_RNA|TTN-AS1_ENST00000431259.2_RNA|TTN-AS1_ENST00000591867.1_RNA|TTN_ENST00000342175.6_Missense_Mutation_p.W25126R|TTN-AS1_ENST00000592182.1_RNA|TTN-AS1_ENST00000590040.1_RNA|TTN-AS1_ENST00000592750.1_RNA|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000592689.1_RNA|TTN-AS1_ENST00000592600.1_RNA|TTN-AS1_ENST00000450692.2_RNA|TTN-AS1_ENST00000591332.1_RNA|TTN-AS1_ENST00000588804.1_RNA|TTN_ENST00000591111.1_Missense_Mutation_p.W32358R|TTN-AS1_ENST00000588716.1_RNA|TTN-AS1_ENST00000590807.1_RNA|TTN-AS1_ENST00000588257.1_RNA|TTN-AS1_ENST00000591466.1_RNA|TTN-AS1_ENST00000586831.1_RNA|TTN-AS1_ENST00000586707.1_RNA|TTN-AS1_ENST00000456053.1_RNA|TTN-AS1_ENST00000419746.1_RNA|TTN-AS1_ENST00000586452.1_RNA|TTN-AS1_ENST00000585451.1_RNA|TTN-AS1_ENST00000585358.1_RNA|TTN-AS1_ENST00000585487.1_RNA|TTN_ENST00000342992.6_Missense_Mutation_p.W31431R	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	32358	Ig-like 150.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAAGTGACCACATGTCTGTG	0.453000													16	56					0	0	1	0	0
HCFC1	3054	broad.mit.edu	37	X	153219825	153219825	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chrX:153219825G>A	ENST00000310441.7	-	17	4991	c.4025C>T	c.(4024-4026)aCg>aTg	p.T1342M	HCFC1_ENST00000369984.4_Missense_Mutation_p.T1342M|HCFC1_ENST00000354233.3_Missense_Mutation_p.T1273M	NM_005334.2	NP_005325.2	P51610	HCFC1_HUMAN	host cell factor C1 (VP16-accessory protein)	1342					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			NS(1)|breast(2)|central_nervous_system(2)|endometrium(12)|kidney(3)|large_intestine(3)|lung(18)|ovary(2)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	47	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGGCTGGCCCGTGCCCCCGTT	0.687000													5	189					0	0	1	0	0
ZC3H13	23091	broad.mit.edu	37	13	46549950	46549950	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr13:46549950G>A	ENST00000242848.4	-	12	2284	c.1936C>T	c.(1936-1938)Cga>Tga	p.R646*	ZC3H13_ENST00000282007.3_Nonsense_Mutation_p.R646*			Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	646	Arg/Ser-rich.						nucleic acid binding|zinc ion binding	p.R646*(1)		cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(27)|lung(25)|ovary(2)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	79		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CCCTGATGTCGAATTGGTGAG	0.403000													12	27					0	0	1	0	0
ZNF76	7629	broad.mit.edu	37	6	35255551	35255551	+	Missense_Mutation	SNP	G	G	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr6:35255551G>T	ENST00000373953.3	+	5	627	c.361G>T	c.(361-363)Gac>Tac	p.D121Y	ZNF76_ENST00000440666.2_Missense_Mutation_p.D95Y|ZNF76_ENST00000339411.5_Missense_Mutation_p.D121Y	NM_003427.3	NP_003418.2	P36508	ZNF76_HUMAN	zinc finger protein 76	121					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|cervix(1)|kidney(1)|large_intestine(4)|lung(5)|ovary(1)|prostate(1)|skin(1)|stomach(1)	16						GGGCTTGGAGGACCTGGCAGC	0.607000													7	25					0.00198382	0.00204581	1	1	0
ALPK3	57538	broad.mit.edu	37	15	85383174	85383174	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr15:85383174C>T	ENST00000258888.5	+	5	1437	c.1270C>T	c.(1270-1272)Cag>Tag	p.Q424*		NM_020778.4	NP_065829.3	Q96L96	ALPK3_HUMAN	alpha-kinase 3	424					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			NS(3)|breast(2)|central_nervous_system(2)|endometrium(12)|kidney(4)|large_intestine(9)|lung(27)|ovary(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	81			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CGACCGCTTCCAGCGAAAGCG	0.692000													6	25					0	0	1	0	0
ZNF761	388561	broad.mit.edu	37	19	53945837	53945837	+	RNA	SNP	T	T	C	rs17855120	by1000genomes	TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr19:53945837T>C	ENST00000454407.1	+	0	55				TPM3P9_ENST00000424846.3_RNA			Q86XN6	ZN761_HUMAN	zinc finger protein 761						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|kidney(2)|large_intestine(5)|lung(13)|ovary(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	30				GBM - Glioblastoma multiforme(134;0.00786)		GGACCAGACTTTGCTTGACCT	0.512000													4	32					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	31983589	31983589	+	Missense_Mutation	SNP	G	G	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr5:31983589G>A	ENST00000438447.1	+	3	1193	c.805G>A	c.(805-807)Ggc>Agc	p.G269S	PDZD2_ENST00000282493.3_Missense_Mutation_p.G269S			O15018	PDZD2_HUMAN	PDZ domain containing 2	269					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus		p.G269S(1)		NS(2)|breast(4)|central_nervous_system(5)|cervix(2)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(31)|lung(58)|ovary(6)|prostate(2)|skin(8)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	148						GCTAGAAAATGGCCCAGATTC	0.557000													21	56					0	0	1	0	0
MTERF	7978	broad.mit.edu	37	7	91503312	91503312	+	Missense_Mutation	SNP	T	T	C			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr7:91503312T>C	ENST00000419292.1	-	2	812	c.736A>G	c.(736-738)Aac>Gac	p.N246D	CTB-104F4.2_ENST00000454222.1_RNA|MTERF_ENST00000351870.3_Missense_Mutation_p.N266D|MTERF_ENST00000406735.2_Missense_Mutation_p.N246D			Q99551	MTERF_HUMAN	mitochondrial transcription termination factor	266					DNA geometric change|regulation of transcription, DNA-dependent|termination of mitochondrial transcription	mitochondrial nucleoid	double-stranded DNA binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(4)|liver(1)|lung(2)|skin(1)	14	all_cancers(62;2.28e-09)|all_epithelial(64;1.07e-07)|Breast(17;0.00371)|all_hematologic(106;0.091)|all_lung(186;0.178)|Lung NSC(181;0.235)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.0993)|Kidney(17;0.118)|Epithelial(20;0.136)|LUSC - Lung squamous cell carcinoma(200;0.176)			TCCTCACTGTTCAAATTGAAA	0.383000													5	39					0	0	1	0	0
PIK3R5	23533	broad.mit.edu	37	17	8790952	8790952	+	Missense_Mutation	SNP	C	C	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr17:8790952C>A	ENST00000447110.1	-	11	1789	c.1665G>T	c.(1663-1665)caG>caT	p.Q555H	PIK3R5_ENST00000584803.1_Missense_Mutation_p.Q555H|PIK3R5_ENST00000581552.1_Missense_Mutation_p.Q555H	NM_001142633.2|NM_001251851.1|NM_001251852.1|NM_001251853.1|NM_001251855.1	NP_001136105.1|NP_001238780.1|NP_001238781.1|NP_001238782.1|NP_001238784.1	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	555					platelet activation	cytosol|membrane|nucleus				breast(2)|central_nervous_system(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(14)|prostate(3)|skin(4)|urinary_tract(1)	34						CGTAGAAGAACTGAAGTTTGA	0.607000													3	11					0.115264	0.115264	1	1	0
ZNF763	284390	broad.mit.edu	37	19	12087920	12087920	+	Missense_Mutation	SNP	C	C	T			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr19:12087920C>T	ENST00000343949.5	+	2	235	c.80C>T	c.(79-81)tCg>tTg	p.S27L	ZNF763_ENST00000538752.1_Missense_Mutation_p.S44L|ZNF763_ENST00000592625.1_Missense_Mutation_p.S24L|ZNF763_ENST00000358987.3_Missense_Mutation_p.S24L|ZNF763_ENST00000591944.1_Missense_Mutation_p.S93L|ZNF763_ENST00000545530.1_Intron|ZNF763_ENST00000590798.1_Missense_Mutation_p.S44L	NM_001012753.1	NP_001012771.1			zinc finger protein 763									p.S26L(1)		central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(9)	15						CTGGATATTTCGCAGAGGAAA	0.493000													45	91					0	0	1	0	0
C1orf53	388722	broad.mit.edu	37	1	197871974	197871974	+	Silent	SNP	G	G	A			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr1:197871974G>A	ENST00000367393.3	+	1	198	c.195G>A	c.(193-195)agG>agA	p.R65R		NM_001024594.2	NP_001019765.1	Q5VUE5	CA053_HUMAN	chromosome 1 open reading frame 53	65										endometrium(1)|lung(1)	2						GAGCGGCGAGGCCTTCGGTGA	0.711000													6	9					0	0	1	0	0
TMEM63A	9725	broad.mit.edu	37	1	226034840	226034842	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr1:226034840_226034842delCTG	ENST00000366835.3	-	24	2593_2595	c.2323_2325delCAG	c.(2323-2325)del	p.Q775del		NM_014698.2	NP_055513.2	O94886	TM63A_HUMAN	transmembrane protein 63A	775						integral to membrane|lysosomal membrane	nucleotide binding	p.Q775delQ(1)		breast(2)|endometrium(3)|large_intestine(5)|lung(6)|ovary(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	24	Breast(184;0.197)					CACCATAGGTCTGCTGCTGCTGC	0.626													9	145	---	---	---	---					
SLC35G2	80723	broad.mit.edu	37	3	136574141	136574143	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr3:136574141_136574143delAGA	ENST00000446465.2	+	2	1467_1469	c.839_841delAGA	c.(838-843)gag>g	p.EK280del	SLC35G2_ENST00000393079.3_In_Frame_Del_p.EK280del|RP11-85F14.5_ENST00000470236.1_RNA|RP11-85F14.5_ENST00000474250.1_RNA|RP11-85F14.5_ENST00000461864.1_RNA	NM_025246.2	NP_079522.2	Q8TBE7	TMM22_HUMAN	solute carrier family 35, member G2	280	DUF6 2.					Golgi apparatus|integral to membrane											TCCATCAAGGAGAAGATCAGCAT	0.424													30	118	---	---	---	---					
BAI3	577	broad.mit.edu	37	6	69666603	69666603	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr6:69666603delA	ENST00000370598.1	+	8	2248	c.1427delA	c.(1426-1428)gafs	p.E476fs		NM_001704.2	NP_001695.1	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	476	TSP type-1 4.				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(2)|breast(4)|central_nervous_system(5)|endometrium(5)|kidney(2)|large_intestine(28)|liver(1)|lung(111)|ovary(10)|pancreas(4)|prostate(7)|skin(22)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(4)	210		all_lung(197;0.212)				GGCGGCTGGGAAAGGCGAATA	0.502													23	101	---	---	---	---					
KAT5	10524	broad.mit.edu	37	11	65484145	65484145	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr11:65484145delC	ENST00000341318.4	+	9	1271	c.1037delC	c.(1036-1038)tcfs	p.S346fs	KAT5_ENST00000530446.1_Frame_Shift_Del_p.S294fs|KAT5_ENST00000534650.1_Frame_Shift_Del_p.S102fs|KAT5_ENST00000377046.3_Frame_Shift_Del_p.S313fs|KAT5_ENST00000352980.4_Frame_Shift_Del_p.S261fs	NM_182710.2	NP_874369.1	Q92993	KAT5_HUMAN	K(lysine) acetyltransferase 5	313					androgen receptor signaling pathway|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|double-strand break repair|interspecies interaction between organisms|negative regulation of interleukin-2 production|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nucleolus|perinuclear region of cytoplasm|Piccolo NuA4 histone acetyltransferase complex	androgen receptor binding|histone acetyltransferase activity|metal ion binding|repressing transcription factor binding|transcription coactivator activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(9)	21						CAGAGTTATTCCCAGAACCTG	0.493													22	61	---	---	---	---					
MAP3K9	4293	broad.mit.edu	37	14	71275774	71275776	+	In_Frame_Del	DEL	CCT	CCT	-	rs3832971		TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr14:71275774_71275776delCCT	ENST00000554752.2	-	1	112_114	c.113_115delAGG	c.(112-117)gcg>g	p.EA38del	MAP3K9_ENST00000381250.4_In_Frame_Del_p.EA38del|MAP3K9_ENST00000555993.2_In_Frame_Del_p.EA38del			P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase 9	38	Ala-rich.|Poly-Glu.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity	p.E38delE(1)		breast(1)|central_nervous_system(3)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(5)|lung(25)|ovary(2)|prostate(1)|skin(3)|stomach(2)	46				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GCCGCCGCCGcctcctcctcctc	0.773													3	4	---	---	---	---					
PIK3R6	146850	broad.mit.edu	37	17	8742936	8742936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr17:8742936delT	ENST00000311434.9	-	3	331	c.92delA	c.(91-93)acfs	p.N31fs	PIK3R6_ENST00000434064.2_5'UTR	NM_001010855.2	NP_001010855.1	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	31					platelet activation	cytosol											CTTACCTTGGTTGCTCTGCAG	0.647													2	4	---	---	---	---					
GATA5	140628	broad.mit.edu	37	20	61041598	61041598	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chr20:61041598delG	ENST00000252997.2	-	4	770	c.709delC	c.(709-711)gcfs	p.R238fs		NM_080473.4	NP_536721.1	Q9BWX5	GATA5_HUMAN	GATA binding protein 5	238					blood coagulation|intestinal epithelial cell differentiation|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			kidney(1)|lung(3)|ovary(1)|stomach(1)	6	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;3.08e-06)			CCGGCGCGGCGGGACGAGGAC	0.721													2	4	---	---	---	---					
RP11-1007I13.4	0	broad.mit.edu	37	X	151296337	151296337	+	RNA	DEL	A	A	-	rs5904334		TCGA-E8-A432-01A-11D-A23M-08	TCGA-E8-A432-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d434e375-e0a6-4f04-b106-ab3c84590b36	2a2116f3-bd77-4060-91f8-11f3d1af5327	g.chrX:151296337delA	ENST00000509345.2	-	0	172																											GGAATTCCAGAAAAAAAAAAA	0.448													3	3	---	---	---	---					
