Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRSS45	377047	broad.mit.edu	37	3	46784402	46784402	+	Splice_Site	SNP	C	C	T			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr3:46784402C>T	ENST00000442359.2	-	3	453		c.e3+1		PRSS50_ENST00000460241.1_Intron	NM_199183.2	NP_954652.2	Q7RTY3	PRS45_HUMAN	protease, serine, 45						proteolysis		serine-type endopeptidase activity			kidney(1)|large_intestine(1)|lung(2)|prostate(1)	5						CAGAAACTCACATAGCACAAG	0.582000													9	16					0	0	1	0	0
ABO	28	broad.mit.edu	37	9	136131300	136131300	+	RNA	SNP	G	G	C			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr9:136131300G>C	ENST00000453660.2	-	0	828							P16442	BGAT_HUMAN	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)						protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	fucosylgalactoside 3-alpha-galactosyltransferase activity|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity|metal ion binding			central_nervous_system(1)|endometrium(3)|large_intestine(2)|lung(2)|prostate(1)|stomach(2)	11				OV - Ovarian serous cystadenocarcinoma(145;5.82e-06)|Epithelial(140;3.45e-05)		CTCTTGCACCGACCCCCCGAA	0.677000													3	18					0	0	1	0	0
ESPNP	0	broad.mit.edu	37	1	17029257	17029257	+	RNA	SNP	T	T	C	rs12125112	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr1:17029257T>C	ENST00000492551.1	-	0	1108					NR_026567.1																						CATGTAGATGTCAGCTGCCTG	0.657000													5	59					0	0	1	0	0
ST5	6764	broad.mit.edu	37	11	8747678	8747678	+	Silent	SNP	G	G	A			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr11:8747678G>A	ENST00000534127.1	-	7	1804	c.1419C>T	c.(1417-1419)aaC>aaT	p.N473N	ST5_ENST00000526757.1_Silent_p.N53N|ST5_ENST00000530438.1_Silent_p.N53N|ST5_ENST00000357665.1_Silent_p.N473N|ST5_ENST00000313726.6_Silent_p.N473N	NM_005418.3	NP_005409.3	P78524	ST5_HUMAN	suppression of tumorigenicity 5	473					positive regulation of ERK1 and ERK2 cascade		protein binding			NS(1)|breast(2)|endometrium(5)|kidney(3)|large_intestine(13)|liver(1)|lung(10)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)	39				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		ACTTGGGTTGGTTCTCAGTAC	0.478000													12	94					0	0	1	0	0
JMY	133746	broad.mit.edu	37	5	78610535	78610535	+	Missense_Mutation	SNP	T	T	G			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr5:78610535T>G	ENST00000396137.4	+	9	2982	c.2520T>G	c.(2518-2520)gaT>gaG	p.D840E	JMY_ENST00000412001.1_Intron	NM_152405.4	NP_689618.4	Q8N9B5	JMY_HUMAN	junction mediating and regulatory protein, p53 cofactor	840					'de novo' actin filament nucleation|actin polymerization-dependent cell motility|Arp2/3 complex-mediated actin nucleation|cell cycle arrest|DNA repair|induction of apoptosis|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	cell leading edge|cytoplasm|cytoskeleton|nucleus	actin binding|transcription coactivator activity			endometrium(4)|kidney(2)|large_intestine(2)|lung(6)|skin(1)|urinary_tract(1)	16		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;4.45e-45)|Epithelial(54;5.85e-40)|all cancers(79;2.89e-35)		TGGAGAAAGATCTGCCTAGAA	0.592000													4	40					0	0	1	0	0
NBPF9	400818	broad.mit.edu	37	1	144823868	144823868	+	Missense_Mutation	SNP	T	T	G			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr1:144823868T>G	ENST00000440491.2	+	9	1135	c.1135T>G	c.(1135-1137)Tat>Gat	p.Y379D	NBPF9_ENST00000468645.1_3'UTR|NBPF9_ENST00000338347.4_Missense_Mutation_p.Y379D|NBPF9_ENST00000281815.8_Missense_Mutation_p.Y64D	NM_001037675.2	NP_001032764.1			neuroblastoma breakpoint family, member 9											NS(2)|prostate(1)	3						GGACTCACTGTATAGATGTTA	0.478000													3	30					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058353	11058353	+	RNA	SNP	T	T	C	rs79433933	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr21:11058353T>C	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GAAATCTCTTTATAAAACCTT	0.343000													5	71					0	0	1	0	0
ZNRD1-AS1	0	broad.mit.edu	37	6	29977359	29977359	+	RNA	SNP	G	G	A	rs3831361	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr6:29977359G>A	ENST00000376797.3	-	0	731				HLA-J_ENST00000462773.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA																							ATTTGTTCATGCCTTCCCTTT	0.453000													5	32					0	0	1	0	0
SIRPB1	10326	broad.mit.edu	37	20	1585397	1585397	+	Missense_Mutation	SNP	T	T	C	rs148754551	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr20:1585397T>C	ENST00000279477.7	-	3	806	c.742A>G	c.(742-744)Acc>Gcc	p.T248A	SIRPB1_ENST00000381603.3_Intron|SIRPB1_ENST00000568365.1_Missense_Mutation_p.T248A|RP4-576H24.4_ENST00000564763.1_Intron|SIRPB1_ENST00000381605.4_Intron	NM_001135844.2	NP_001129316.1	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1	248					cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding	p.T248A(5)		central_nervous_system(2)|kidney(2)|large_intestine(4)|lung(16)|ovary(1)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)	31						CCTCGGATGGTCTCAGACAAG	0.627000													3	27					0	0	1	0	0
CYC1	1537	broad.mit.edu	37	8	145150795	145150795	+	Silent	SNP	G	G	A	rs146030978		TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr8:145150795G>A	ENST00000318911.4	+	2	262	c.189G>A	c.(187-189)gcG>gcA	p.A63A		NM_001916.3	NP_001907.2	P08574	CY1_HUMAN	cytochrome c-1	63					respiratory electron transport chain|transport	cell junction|integral to membrane|mitochondrial inner membrane|respiratory chain	electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity|heme binding			endometrium(1)|kidney(1)|large_intestine(2)|lung(8)|ovary(1)|prostate(2)	15	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;8.71e-40)|all cancers(56;3e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCTGTCAGCGCTGGGCATGC	0.662000											OREG0019052	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	63					0	0	1	0	0
TBC1D32	221322	broad.mit.edu	37	6	121544383	121544383	+	Splice_Site	SNP	A	A	G			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr6:121544383A>G	ENST00000275159.6	-	21	2479	c.2481_splice	c.e21+1	p.I827_splice	TBC1D32_ENST00000398212.2_Splice_Site_p.I827_splice|TBC1D32_ENST00000398197.2_5'UTR					TBC1 domain family, member 32																		ATGACTTACAATAACACATGT	0.299000													23	32					0	0	1	0	0
ZNRD1-AS1	0	broad.mit.edu	37	6	29977358	29977358	+	RNA	SNP	T	T	C	rs146982767	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr6:29977358T>C	ENST00000376797.3	-	0	731				HLA-J_ENST00000462773.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA																							GATTTGTTCATGCCTTCCCTT	0.448000													5	32					0	0	1	0	0
TRBC2	0	broad.mit.edu	37	7	142499762	142499762	+	RNA	SNP	A	A	G	rs706	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr7:142499762A>G	ENST00000466254.1	+	0	405																											GTGCACAGGTACCTACATGCT	0.542000													5	117					0	0	1	0	0
USP32P2	0	broad.mit.edu	37	17	18416747	18416747	+	RNA	SNP	G	G	T	rs141915702	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr17:18416747G>T	ENST00000425211.1	-	0	2522																											GGCAGAGTCGGTGTCAATTTC	0.428000													4	45					0.00909568	0.00940932	1	1	0
CACNA1D	776	broad.mit.edu	37	3	53810919	53810919	+	Missense_Mutation	SNP	T	T	A			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr3:53810919T>A	ENST00000288139.3	+	38	4701	c.4583T>A	c.(4582-4584)cTg>cAg	p.L1528Q	CACNA1D_ENST00000350061.5_Missense_Mutation_p.L1508Q|CACNA1D_ENST00000422281.2_Missense_Mutation_p.L1493Q|CACNA1D_ENST00000540742.1_Missense_Mutation_p.L400Q	NM_000720.2	NP_000711.1	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type, alpha 1D subunit	1508					axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			breast(3)|central_nervous_system(9)|cervix(2)|endometrium(11)|kidney(7)|large_intestine(13)|liver(1)|lung(29)|ovary(6)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	90				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GTGGTCACTCTGCTTCGACGC	0.527000													7	45					0	0	1	0	0
ZNF28	7576	broad.mit.edu	37	19	53321259	53321259	+	Translation_Start_Site	SNP	G	G	A	rs112424230	by1000genomes	TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr19:53321259G>A	ENST00000457749.2	-	0	72				ZNF28_ENST00000594602.1_De_novo_Start_OutOfFrame|ZNF28_ENST00000464469.2_5'UTR|ZNF28_ENST00000414252.2_De_novo_Start_InFrame	NM_006969.3	NP_008900.3	P17035	ZNF28_HUMAN	zinc finger protein 28						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(11)|liver(1)|lung(10)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	34				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TCTTCCTCACGTACCAAGATT	0.428000													4	70					0	0	1	0	0
MT-RNR2	0	broad.mit.edu	37	MT	3072	3072	+	RNA	SNP	T	T	C			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chrM:3072T>C	ENST00000387347.2	+	0	1402					NR_039705.1																						CGTGATCTGAGTTCAGACCGG	0.468000													9	0					0	0	1	0	0
KIAA1549L	25758	broad.mit.edu	37	11	33564403	33564403	+	Missense_Mutation	SNP	A	A	G			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr11:33564403A>G	ENST00000321505.4	+	1	583	c.403A>G	c.(403-405)Acc>Gcc	p.T135A	KIAA1549L_ENST00000265654.5_Missense_Mutation_p.T135A|KIAA1549L_ENST00000389726.3_Missense_Mutation_p.T135A					KIAA1549-like																		CATAGAAATGACCAGCAGAAA	0.522000											OREG0020868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	44					0	0	1	0	0
UBE2U	148581	broad.mit.edu	37	1	64676469	64676469	+	Missense_Mutation	SNP	C	C	A			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr1:64676469C>A	ENST00000371077.4	+	4	710	c.286C>A	c.(286-288)Cct>Act	p.P96T	UBE2U_ENST00000371076.3_Missense_Mutation_p.P96T			Q5VVX9	UBE2U_HUMAN	ubiquitin-conjugating enzyme E2U (putative)	96							ATP binding|protein binding|ubiquitin-protein ligase activity			large_intestine(3)|lung(2)|skin(1)	6						TTTGGACAACCCTGAGAAGTG	0.308000													3	41					0.115264	0.115264	1	1	0
ATRX	546	broad.mit.edu	37	X	76875995	76875995	+	Missense_Mutation	SNP	C	C	A			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chrX:76875995C>A	ENST00000373344.5	-	20	5354	c.5140G>T	c.(5140-5142)Gat>Tat	p.D1714Y	ATRX_ENST00000395603.3_Missense_Mutation_p.D1676Y|ATRX_ENST00000480283.1_5'UTR	NM_000489.3	NP_000480.2	P46100	ATRX_HUMAN	alpha thalassemia/mental retardation syndrome X-linked	1714	Helicase ATP-binding.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding	p.?(1)		bone(1)|breast(6)|central_nervous_system(31)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(15)|kidney(14)|large_intestine(1)|liver(1)|lung(40)|ovary(2)|pancreas(13)|prostate(5)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(2)	145					Phosphatidylserine(DB00144)	ACAACAAAATCAGGGCCTACA	0.284000			"""Mis, F, N"""		"""Pancreatic neuroendocrine tumors, paediatric GBM"""		ATR-X (alpha thalassemia/mental retardation) syndrome						6	14					0.00116845	0.00129827	1	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913377		TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr7:140453136A>T	ENST00000288602.6	-	15	1859	c.1799T>A	c.(1798-1800)gTg>gAg	p.V600E		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	v-raf murine sarcoma viral oncogene homolog B	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(15453)|p.V600K(252)|p.V600R(44)|p.V600D(16)|p.V600A(12)|p.V600_K601>E(12)|p.V600G(11)|p.T599_R603>I(2)|p.V600Q(2)|p.V600_S605>EK(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insDFGLAT(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	NS(588)|adrenal_gland(3)|autonomic_ganglia(3)|biliary_tract(29)|bone(7)|breast(21)|central_nervous_system(99)|cervix(6)|endometrium(33)|eye(72)|gastrointestinal_tract_(site_indeterminate)(2)|genital_tract(4)|haematopoietic_and_lymphoid_tissue(436)|kidney(3)|large_intestine(6953)|liver(17)|lung(192)|oesophagus(4)|ovary(275)|pancreas(15)|pituitary(1)|prostate(25)|salivary_gland(1)|skin(6285)|small_intestine(12)|soft_tissue(40)|stomach(11)|testis(7)|thyroid(12220)|upper_aerodigestive_tract(13)|urinary_tract(3)	27380	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600D(K029AX_SKIN)|V600D(WM115_SKIN)|V600D(WM2664_SKIN)|V600E(8505C_THYROID)|V600E(A101D_SKIN)|V600E(A2058_SKIN)|V600E(A375_SKIN)|V600E(A673_BONE)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(BCPAP_THYROID)|V600E(BHT101_THYROID)|V600E(BT474_BREAST)|V600E(C32_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(COLO205_LARGE_INTESTINE)|V600E(COLO679_SKIN)|V600E(COLO741_SKIN)|V600E(COLO783_SKIN)|V600E(COLO800_SKIN)|V600E(COLO818_SKIN)|V600E(COLO829_SKIN)|V600E(COLO849_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(DU4475_BREAST)|V600E(ES2_OVARY)|V600E(G361_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(HS294T_SKIN)|V600E(HS695T_SKIN)|V600E(HS939T_SKIN)|V600E(IGR1_SKIN)|V600E(IGR37_SKIN)|V600E(IGR39_SKIN)|V600E(K029AX_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(LOXIMVI_SKIN)|V600E(MALME3M_SKIN)|V600E(MELHO_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(RKO_LARGE_INTESTINE)|V600E(RPMI7951_SKIN)|V600E(RVH421_SKIN)|V600E(SH4_SKIN)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(SKHEP1_LIVER)|V600E(SKMEL24_SKIN)|V600E(SKMEL28_SKIN)|V600E(SKMEL5_SKIN)|V600E(SW1417_LARGE_INTESTINE)|V600E(UACC257_SKIN)|V600E(UACC62_SKIN)|V600E(WM793_SKIN)|V600E(WM88_SKIN)|V600E(WM983B_SKIN)	61	"""Mis, T, O"""	"""AKAP9, KIAA1549"""	"""melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma"""		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				46	45					0	0	1	0	0
SDHAP1	0	broad.mit.edu	37	3	195711343	195711344	+	RNA	INS	-	-	T			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr3:195711343_195711344insT	ENST00000427841.1	-	0	585					NR_003264.2																						AAAGACTTCTCTGTGAGCTTTG	0.381													3	3	---	---	---	---					
CWH43	80157	broad.mit.edu	37	4	49063893	49063893	+	Frame_Shift_Del	DEL	A	A	-			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr4:49063893delA	ENST00000226432.4	+	16	2269	c.2086delA	c.(2086-2088)aafs	p.K696fs	CWH43_ENST00000513409.1_Frame_Shift_Del_p.K669fs	NM_025087.2	NP_079363.2	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	696					GPI anchor biosynthetic process	integral to membrane				cervix(1)|endometrium(4)|kidney(1)|large_intestine(4)|lung(26)|ovary(1)|prostate(1)|skin(4)|urinary_tract(1)	43						GAATACTCCCAAATACTTTTT	0.254													11	16	---	---	---	---					
CTC-338M12.9	0	broad.mit.edu	37	5	180708658	180708658	+	RNA	DEL	A	A	-			TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr5:180708658delA	ENST00000412295.2	+	0	238																											GAGCGGTAGGAGgggggctgg	0.711													2	4	---	---	---	---					
BHLHE22	27319	broad.mit.edu	37	8	65494021	65494023	+	In_Frame_Del	DEL	GCA	GCA	-	rs62519837		TCGA-EL-A4K1-01A-11D-A257-08	TCGA-EL-A4K1-11A-11D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ad7e48d-ad2d-4b88-841b-8dcf2ac88399	5d6424d3-35dc-4aa9-9490-d60a5fb0ee44	g.chr8:65494021_65494023delGCA	ENST00000321870.1	+	1	1208_1210	c.674_676delGCA	c.(673-678)ggc>g	p.GS225del	RP11-21C4.1_ENST00000517909.1_RNA	NM_152414.4	NP_689627.1	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix family, member e22	225	Gly-rich.|Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus		p.S234delS(1)|p.S226G(1)		NS(1)|central_nervous_system(1)|lung(1)|prostate(1)|skin(1)	5						ggcagcggcggcagcagcagcag	0.709													2	4	---	---	---	---					
