Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM2	7799	broad.mit.edu	37	1	14059320	14059320	+	Silent	SNP	A	A	G			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr1:14059320A>G	ENST00000235372.7	+	4	1030	c.174A>G	c.(172-174)ccA>ccG	p.P58P	PRDM2_ENST00000376048.5_Silent_p.P58P|PRDM2_ENST00000311066.5_Silent_p.P58P	NM_012231.4	NP_036363.2	Q13029	PRDM2_HUMAN	PR domain containing 2, with ZNF domain	58	SET.					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(16)|lung(20)|ovary(3)|prostate(3)|skin(1)|urinary_tract(2)	55	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		AATTTGGGCCATTTGTTGGTG	0.289000													3	59					0	0	0.014758	0	0
IP6K2	51447	broad.mit.edu	37	3	48732456	48732456	+	Missense_Mutation	SNP	C	C	A			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr3:48732456C>A	ENST00000431721.2	-	3	671	c.434G>T	c.(433-435)aGg>aTg	p.R145M	IP6K2_ENST00000340879.4_Intron|IP6K2_ENST00000432678.2_Intron|IP6K2_ENST00000446860.1_Missense_Mutation_p.R148M|IP6K2_ENST00000436134.1_Intron|IP6K2_ENST00000413298.1_Intron|IP6K2_ENST00000450045.1_Intron|IP6K2_ENST00000449610.1_Missense_Mutation_p.R90M|IP6K2_ENST00000453202.1_Missense_Mutation_p.R90M|IP6K2_ENST00000328631.5_Intron|IP6K2_ENST00000417896.1_Missense_Mutation_p.R90M|IP6K2_ENST00000443964.1_Missense_Mutation_p.R149M	NM_001190316.1	NP_001177245.1	Q9UHH9	IP6K2_HUMAN	inositol hexakisphosphate kinase 2	177					negative regulation of cell growth|phosphatidylinositol phosphorylation|positive regulation of apoptosis|type I interferon-mediated signaling pathway	intermediate filament cytoskeleton|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity			biliary_tract(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(7)|ovary(1)	15						CTGCCAGGGCCTTCCATGGCC	0.607000													13	24					5.50884e-06	1.1362e-05	0.093190	1	0
DNM1P47	0	broad.mit.edu	37	15	102305092	102305092	+	RNA	SNP	A	A	G			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr15:102305092A>G	ENST00000561463.1	+	0	13138																											CATGAACACCATCAGCACAGC	0.632000													4	27					0	0	0.021553	0	0
TSPAN33	340348	broad.mit.edu	37	7	128801563	128801563	+	Missense_Mutation	SNP	T	T	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:128801563T>C	ENST00000289407.4	+	2	255	c.146T>C	c.(145-147)cTa>cCa	p.L49P		NM_178562.3	NP_848657.1	Q86UF1	TSN33_HUMAN	tetraspanin 33	49						integral to membrane				NS(1)|endometrium(1)|large_intestine(3)|lung(7)|ovary(1)|prostate(1)	14						TACGCTCGGCTAATGAAGCAT	0.572000													3	175					0	0	0.115264	0	0
POU2F2	5452	broad.mit.edu	37	19	42603703	42603703	+	Missense_Mutation	SNP	C	C	A			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr19:42603703C>A	ENST00000389341.5	-	7	543	c.477G>T	c.(475-477)caG>caT	p.Q159H	POU2F2_ENST00000342301.4_Missense_Mutation_p.Q159H|POU2F2_ENST00000533720.1_Missense_Mutation_p.Q159H|POU2F2_ENST00000560558.1_Missense_Mutation_p.Q120H|POU2F2_ENST00000560398.1_Missense_Mutation_p.Q181H|POU2F2_ENST00000529952.1_Missense_Mutation_p.Q159H|POU2F2_ENST00000529067.1_Missense_Mutation_p.Q159H|POU2F2_ENST00000526816.2_Missense_Mutation_p.Q159H	NM_001207025.2|NM_001247994.1|NM_002698.4	NP_001193954.1|NP_001234923.1|NP_002689.1	P09086	PO2F2_HUMAN	POU class 2 homeobox 2	159					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			kidney(1)|large_intestine(5)|lung(4)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	17		Prostate(69;0.059)				CGGCCCGGGGCTGGGAGGTCA	0.607000													14	32					2.23348e-06	4.91366e-06	0.146539	1	0
SSTR2	0	broad.mit.edu	37	17	71166132	71166132	+	Missense_Mutation	SNP	G	G	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr17:71166132G>T	ENST00000357585.2	+	2	1043	c.674G>T	c.(673-675)tGt>tTt	p.C225F	RP11-143K11.5_ENST00000580671.1_RNA|SSTR2_ENST00000315332.2_Missense_Mutation_p.C225F	NM_001050.2	NP_001041.1	P30874	SSR2_HUMAN	somatostatin receptor 2	225					digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity			endometrium(2)|large_intestine(5)|lung(2)|prostate(2)	11			LUSC - Lung squamous cell carcinoma(166;0.197)			ACCATCATCTGTCTTTGCTAC	0.502000													18	145					5.03518e-11	1.18686e-10	0.043863	1	0
ALMS1	7840	broad.mit.edu	37	2	73828375	73828375	+	Missense_Mutation	SNP	A	A	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr2:73828375A>T	ENST00000264448.6	+	19	12034	c.11923A>T	c.(11923-11925)Aac>Tac	p.N3975Y	ALMS1_ENST00000409009.1_Missense_Mutation_p.N3933Y|ALMS1_ENST00000464408.2_3'UTR	NM_015120.4	NP_055935.4	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3975					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				breast(4)|endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(31)|lung(68)|ovary(4)|pancreas(4)|prostate(3)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(2)	147						AAAGAAGGAAAACGTGCCTAA	0.468000													6	203					0	0	0.021553	0	0
DNM1P47	0	broad.mit.edu	37	15	102305084	102305084	+	RNA	SNP	T	T	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr15:102305084T>C	ENST00000561463.1	+	0	13130																											GACATCAACATGAACACCATC	0.632000													4	24					0	0	0.014758	0	0
ANKRD30BP2	0	broad.mit.edu	37	21	14414902	14414902	+	RNA	SNP	G	G	A	rs2821609	by1000genomes	TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr21:14414902G>A	ENST00000507941.1	+	0	95																											CCAGCTTGACGTCCTTGATGG	0.443000													8	49					0	0	0.047766	0	0
TUBB8P7	0	broad.mit.edu	37	16	90161618	90161618	+	RNA	SNP	C	C	T	rs13338202	by1000genomes	TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr16:90161618C>T	ENST00000564451.1	+	0	971				TUBB8P7_ENST00000567960.1_RNA														p.D118D(2)									CAGTGATGGACGTTGTCAGAA	0.607000													3	31					0	0	0.009096	0	0
ALS2CR12	130540	broad.mit.edu	37	2	202216069	202216069	+	Missense_Mutation	SNP	C	C	T	rs142397497		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr2:202216069C>T	ENST00000405148.2	-	2	502	c.59G>A	c.(58-60)cGg>cAg	p.R20Q	ALS2CR12_ENST00000286190.5_Missense_Mutation_p.R20Q|ALS2CR12_ENST00000448967.1_5'UTR|ALS2CR12_ENST00000392257.3_Missense_Mutation_p.R20Q|ALS2CR12_ENST00000439709.1_Missense_Mutation_p.R20Q	NM_139163.2	NP_631902.2	Q96Q35	AL2SB_HUMAN	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12	20					regulation of GTPase activity		protein binding	p.R20Q(1)		NS(1)|breast(5)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(6)|ovary(2)	21						GATTAGCTTCCGTGGTCCCAA	0.557000													25	49					0	0	0.134883	0	0
KLHL14	57565	broad.mit.edu	37	18	30349946	30349946	+	Silent	SNP	C	C	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr18:30349946C>T	ENST00000359358.4	-	2	1047	c.609G>A	c.(607-609)aaG>aaA	p.K203K	KLHL14_ENST00000358095.4_Silent_p.K203K|AC012123.1_ENST00000426194.1_Intron	NM_020805.1	NP_065856.1	Q9P2G3	KLH14_HUMAN	kelch-like family member 14	203						cytosol|endoplasmic reticulum membrane				breast(3)|central_nervous_system(1)|endometrium(1)|large_intestine(4)|lung(20)|ovary(2)	31						TGTTGGCCAGCTTCTTGGTCT	0.627000													4	114					0	0	0.014758	0	0
NR3C2	0	broad.mit.edu	37	4	149075797	149075797	+	Nonsense_Mutation	SNP	G	G	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr4:149075797G>C	ENST00000355292.3	-	5	2644	c.2282C>G	c.(2281-2283)tCa>tGa	p.S761*	NR3C2_ENST00000342437.4_Intron|NR3C2_ENST00000344721.4_Nonsense_Mutation_p.S757*|NR3C2_ENST00000512865.1_Intron|NR3C2_ENST00000503313.1_5'UTR|NR3C2_ENST00000358102.3_Nonsense_Mutation_p.S757*|RP11-76G10.1_ENST00000514843.1_RNA|NR3C2_ENST00000511528.1_Nonsense_Mutation_p.S761*			P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	757	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(14)|liver(1)|lung(11)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	41	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ATCTGGTTTTGAGCTGTCATA	0.493000													4	215					0	0	0.009096	0	0
HACE1	57531	broad.mit.edu	37	6	105198273	105198273	+	Missense_Mutation	SNP	C	C	A			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr6:105198273C>A	ENST00000262903.4	-	20	2562	c.2286G>T	c.(2284-2286)caG>caT	p.Q762H	HACE1_ENST00000369125.2_Missense_Mutation_p.Q547H|HACE1_ENST00000517995.1_5'UTR	NM_020771.3	NP_065822.2	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	762	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(11)|lung(17)|ovary(5)|pancreas(1)|skin(1)|upper_aerodigestive_tract(2)	44		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		TATGAAAGCCCTGTAAAAAAG	0.383000													3	43					0.115264	0.190186	0.115264	1	0
OR4C6	219432	broad.mit.edu	37	11	55432991	55432991	+	Missense_Mutation	SNP	G	G	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr11:55432991G>C	ENST00000314259.3	+	1	378	c.349G>C	c.(349-351)Gcc>Ccc	p.A117P		NM_001004704.1	NP_001004704.1	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C, member 6	117					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(4)|lung(49)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	71						CACTGTGATGGCCTATGACCG	0.567000													3	98					0	0	0.115264	0	0
CSMD1	64478	broad.mit.edu	37	8	3008978	3008978	+	Missense_Mutation	SNP	G	G	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr8:3008978G>T	ENST00000602557.1	-	41	6530	c.5975C>A	c.(5974-5976)cCa>cAa	p.P1992Q	CSMD1_ENST00000400186.3_Missense_Mutation_p.P1992Q|CSMD1_ENST00000539096.1_Missense_Mutation_p.P1991Q|CSMD1_ENST00000602723.1_Missense_Mutation_p.P1992Q|CSMD1_ENST00000523387.1_5'UTR|CSMD1_ENST00000542608.1_Missense_Mutation_p.P1991Q|CSMD1_ENST00000537824.1_Missense_Mutation_p.P1991Q|CSMD1_ENST00000520002.1_Missense_Mutation_p.P1992Q			Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1	1992	CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTAAGAACCTGGGAAGCCGGG	0.488000													10	28					6.40141e-05	0.000124263	0.080935	1	0
INTU	27152	broad.mit.edu	37	4	128627849	128627850	+	Frame_Shift_Ins	INS	-	-	A			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr4:128627849_128627850insA	ENST00000335251.5	+	12	2099_2100	c.1996_1997insA	c.(1996-1998)aaafs	p.K666fs		NM_015693.3	NP_056508.2	Q9ULD6	PDZD6_HUMAN	inturned planar cell polarity protein	666										breast(3)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(8)|liver(2)|lung(17)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	43						TGGATCACGTGAAAAAACAGAT	0.465													40	87	---	---	---	---					
CTC-338M12.9	0	broad.mit.edu	37	5	180708776	180708777	+	RNA	INS	-	-	G	rs140221514		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr5:180708776_180708777insG	ENST00000412295.2	+	0	238																											gggcggtaggagggggctggag	0.728													2	4	---	---	---	---					
GS1-124K5.2	0	broad.mit.edu	37	7	65888988	65888988	+	RNA	DEL	T	T	-			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:65888988delT	ENST00000442578.1	-	0	826																											tttttttttcttttttttttt	0.488													2	4	---	---	---	---					
RP11-467H10.2	0	broad.mit.edu	37	7	76685729	76685730	+	RNA	DEL	AA	AA	-			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:76685729_76685730delAA	ENST00000459742.1	+	0	58																											tctgtctcacaaaaaaaaaaaa	0.540													2	4	---	---	---	---					
POLI	11201	broad.mit.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	CGA	-	rs140689079		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr18:51795958_51795960delCGA	ENST00000579534.1	+	1	185_187	c.42_44delCGA	c.(40-45)ggc>gg	p.GD14del	POLI_ENST00000406285.3_In_Frame_Del_p.GD14del|POLI_ENST00000579434.1_5'UTR	NM_007195.2	NP_009126.2	Q9UNA4	POLI_HUMAN	polymerase (DNA directed) iota	14					DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding	p.D17delD(1)		breast(1)|endometrium(4)|kidney(2)|large_intestine(10)|lung(5)|ovary(3)|urinary_tract(1)	26				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		AAGGCGGCGGCGACGACGACGAG	0.729								DNA polymerases (catalytic subunits)					3	3	---	---	---	---					
