Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLXNA3	55558	broad.mit.edu	37	X	153698460	153698460	+	Missense_Mutation	SNP	G	G	A			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chrX:153698460G>A	ENST00000369682.3	+	29	5111	c.4936G>A	c.(4936-4938)Ggc>Agc	p.G1646S	PLXNA3_ENST00000493546.1_3'UTR	NM_017514.3	NP_059984.2	P51805	PLXA3_HUMAN	plexin A3	1646					axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			breast(2)|central_nervous_system(2)|cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(26)|ovary(2)|prostate(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	48	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGGGGACCGTGGCAGCAAGAT	0.627000													7	67					0	0	1	0	0
VCP	7415	broad.mit.edu	37	9	35061662	35061662	+	Missense_Mutation	SNP	A	A	G			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr9:35061662A>G	ENST00000358901.6	-	10	2001	c.1106T>C	c.(1105-1107)aTt>aCt	p.I369T		NM_007126.3	NP_009057.1	P55072	TERA_HUMAN	valosin containing protein	369					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			breast(3)|endometrium(2)|kidney(1)|large_intestine(4)|lung(10)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)	24			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AGGAATTCCAATATCTACCTC	0.483000													17	128					0	0	1	0	0
RP11-1166P10.6	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	A	C			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr16:32070612A>C	ENST00000566806.1	-	0	499																											GGTCTCCTGCAAGGCTTCTGG	0.552000													4	60					0	0	1	0	0
ALX3	257	broad.mit.edu	37	1	110607406	110607406	+	Missense_Mutation	SNP	G	G	A			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr1:110607406G>A	ENST00000369792.4	-	2	484	c.397C>T	c.(397-399)Cat>Tat	p.H133Y		NM_006492.2	NP_006483.2	O95076	ALX3_HUMAN	ALX homeobox 3	133						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(3)|skin(1)|upper_aerodigestive_tract(1)	6		all_cancers(81;2.35e-05)|all_epithelial(167;7.69e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.015)|all cancers(265;0.0706)|Epithelial(280;0.0758)|Colorectal(144;0.113)|LUSC - Lung squamous cell carcinoma(189;0.135)		AGAGGAAGATGCAGGCTGGCC	0.632000													26	51					0	0	1	0	0
TSPAN32	10077	broad.mit.edu	37	11	2324041	2324041	+	Translation_Start_Site	SNP	A	A	G	rs2074022	by1000genomes	TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr11:2324041A>G	ENST00000451520.2	+	1	89	c.1A>G	c.(1-3)Atg>Gtg	p.M1V	TSPAN32_ENST00000182290.4_Intron|TSPAN32_ENST00000483227.1_Intron|TSPAN32_ENST00000381121.3_Intron			Q96QS1	TSN32_HUMAN	tetraspanin 32	0					cell-cell signaling	integral to membrane				breast(1)|central_nervous_system(1)|lung(4)|ovary(1)|skin(1)	8		all_epithelial(84;4.89e-05)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.00791)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.000533)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		CAGCAGTCCCATGCCCCACAC	0.642000													3	20					0	0	1	0	0
TUBB8P7	0	broad.mit.edu	37	16	90160948	90160948	+	RNA	SNP	G	G	A	rs8049119	by1000genomes	TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr16:90160948G>A	ENST00000564451.1	+	0	894				TUBB8P7_ENST00000567960.1_RNA																							TGGCAGGTACGTGCCTCGCGC	0.711000													3	32					0	0	1	0	0
LRRC37A11P	0	broad.mit.edu	37	17	37188240	37188240	+	RNA	SNP	C	C	T	rs34700711	by1000genomes	TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr17:37188240C>T	ENST00000425901.2	+	0	2082					NR_033753.2																						ACAGTTCAACCTCTGGACCTG	0.512000													5	83					0	0	1	0	0
RNF157	114804	broad.mit.edu	37	17	74154479	74154479	+	Missense_Mutation	SNP	C	C	T			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr17:74154479C>T	ENST00000269391.6	-	13	1540	c.1408G>A	c.(1408-1410)Gga>Aga	p.G470R	RNF157_ENST00000319945.6_Missense_Mutation_p.G470R	NM_052916.2	NP_443148.1	Q96PX1	RN157_HUMAN	ring finger protein 157	470	Ser-rich.						zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|large_intestine(3)|lung(12)|ovary(2)|prostate(1)|skin(1)|stomach(2)|urinary_tract(1)	25			LUSC - Lung squamous cell carcinoma(166;0.187)			ATTACCTCTCCGAGATGCTGA	0.532000													5	103					0	0	1	0	0
LIMS1	3987	broad.mit.edu	37	2	109292399	109292399	+	Missense_Mutation	SNP	A	A	G			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr2:109292399A>G	ENST00000393310.1	+	6	727	c.560A>G	c.(559-561)aAa>aGa	p.K187R	LIMS1_ENST00000544547.1_Missense_Mutation_p.K199R|LIMS1_ENST00000409441.1_Missense_Mutation_p.K224R|LIMS1_ENST00000542845.1_Missense_Mutation_p.K249R|LIMS1_ENST00000410093.1_Missense_Mutation_p.K191R|LIMS1_ENST00000332345.6_Missense_Mutation_p.K187R|LIMS1_ENST00000338045.3_Missense_Mutation_p.K187R	NM_001193488.1	NP_001180417.1	P48059	LIMS1_HUMAN	LIM and senescent cell antigen-like domains 1	187					cell aging|cell junction assembly|cellular response to transforming growth factor beta stimulus|negative regulation of transcription, DNA-dependent	cytosol|focal adhesion|perinuclear region of cytoplasm	protein binding|zinc ion binding			breast(2)|endometrium(2)|kidney(1)|large_intestine(1)|lung(4)	10						TGCCATGATAAAATGGGGGTC	0.557000													4	47					0	0	1	0	0
TRIM49C	642612	broad.mit.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	G	A	rs145791878	by1000genomes	TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr11:89774252G>A	ENST00000448984.1	+	8	1222	c.893G>A	c.(892-894)aGt>aAt	p.S298N	TRIM49C_ENST00000432771.1_Intron	NM_001195234.1	NP_001182163.1	P0CI26	T49L2_HUMAN	tripartite motif containing 49C	298	B30.2/SPRY.					intracellular	zinc ion binding	p.S298N(4)		endometrium(3)|kidney(1)|lung(4)	8						GAAGCCAACAGTGATATCTTT	0.323000													5	63					0	0	1	0	0
KCNJ10	3766	broad.mit.edu	37	1	160011624	160011624	+	Missense_Mutation	SNP	C	C	G			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr1:160011624C>G	ENST00000368089.3	-	2	925	c.699G>C	c.(697-699)caG>caC	p.Q233H	KCNJ10_ENST00000509700.1_5'UTR	NM_002241.4	NP_002232.2	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily J, member 10	233						integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(7)|ovary(1)|prostate(1)	17	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCACATTGACCTGGTTGAGCC	0.502000													23	75					0	0	1	0	0
CUL4B	8450	broad.mit.edu	37	X	119660702	119660702	+	Missense_Mutation	SNP	G	G	T			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chrX:119660702G>T	ENST00000371322.5	-	20	2663	c.2602C>A	c.(2602-2604)Ctt>Att	p.L868I	CUL4B_ENST00000336592.6_Missense_Mutation_p.L873I|CUL4B_ENST00000404115.3_Missense_Mutation_p.L886I	NM_001079872.1	NP_001073341.1	Q13620	CUL4B_HUMAN	cullin 4B	886					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(7)|lung(14)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	36						CTCTTCTTAAGATCAGCAGGC	0.358000													4	61					0.00909568	0.0104432	1	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913377		TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr7:140453136A>T	ENST00000288602.6	-	15	1859	c.1799T>A	c.(1798-1800)gTg>gAg	p.V600E		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	v-raf murine sarcoma viral oncogene homolog B	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(15453)|p.V600K(252)|p.V600R(44)|p.V600D(16)|p.V600A(12)|p.V600_K601>E(12)|p.V600G(11)|p.T599_R603>I(2)|p.V600Q(2)|p.V600_S605>EK(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insDFGLAT(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	NS(588)|adrenal_gland(3)|autonomic_ganglia(3)|biliary_tract(29)|bone(7)|breast(21)|central_nervous_system(99)|cervix(6)|endometrium(33)|eye(72)|gastrointestinal_tract_(site_indeterminate)(2)|genital_tract(4)|haematopoietic_and_lymphoid_tissue(436)|kidney(3)|large_intestine(6953)|liver(17)|lung(192)|oesophagus(4)|ovary(275)|pancreas(15)|pituitary(1)|prostate(25)|salivary_gland(1)|skin(6285)|small_intestine(12)|soft_tissue(40)|stomach(11)|testis(7)|thyroid(12220)|upper_aerodigestive_tract(13)|urinary_tract(3)	27380	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600D(K029AX_SKIN)|V600D(WM115_SKIN)|V600D(WM2664_SKIN)|V600E(8505C_THYROID)|V600E(A101D_SKIN)|V600E(A2058_SKIN)|V600E(A375_SKIN)|V600E(A673_BONE)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(BCPAP_THYROID)|V600E(BHT101_THYROID)|V600E(BT474_BREAST)|V600E(C32_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(COLO205_LARGE_INTESTINE)|V600E(COLO679_SKIN)|V600E(COLO741_SKIN)|V600E(COLO783_SKIN)|V600E(COLO800_SKIN)|V600E(COLO818_SKIN)|V600E(COLO829_SKIN)|V600E(COLO849_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(DU4475_BREAST)|V600E(ES2_OVARY)|V600E(G361_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(HS294T_SKIN)|V600E(HS695T_SKIN)|V600E(HS939T_SKIN)|V600E(IGR1_SKIN)|V600E(IGR37_SKIN)|V600E(IGR39_SKIN)|V600E(K029AX_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(LOXIMVI_SKIN)|V600E(MALME3M_SKIN)|V600E(MELHO_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(RKO_LARGE_INTESTINE)|V600E(RPMI7951_SKIN)|V600E(RVH421_SKIN)|V600E(SH4_SKIN)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(SKHEP1_LIVER)|V600E(SKMEL24_SKIN)|V600E(SKMEL28_SKIN)|V600E(SKMEL5_SKIN)|V600E(SW1417_LARGE_INTESTINE)|V600E(UACC257_SKIN)|V600E(UACC62_SKIN)|V600E(WM793_SKIN)|V600E(WM88_SKIN)|V600E(WM983B_SKIN)	61	"""Mis, T, O"""	"""AKAP9, KIAA1549"""	"""melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma"""		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				21	60					0	0	1	0	0
LRRC37A11P	0	broad.mit.edu	37	17	37188177	37188177	+	RNA	SNP	C	C	A			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr17:37188177C>A	ENST00000425901.2	+	0	2019					NR_033753.2																						CTTGAGGTGACACTTCCACCG	0.502000													8	100					0.307466	0.307466	1	1	0
ANKZF1	55139	broad.mit.edu	37	2	220097799	220097799	+	Splice_Site	SNP	A	A	G			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr2:220097799A>G	ENST00000323348.5	+	6	732		c.e6-1		ANKZF1_ENST00000410034.3_Splice_Site|ANKZF1_ENST00000409849.1_Splice_Site	NM_018089.2	NP_060559.2	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing 1							intracellular	zinc ion binding			breast(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(8)|ovary(2)|prostate(1)|skin(1)|urinary_tract(1)	23		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCTGTCATCAAGGATCCCCCA	0.468000													60	117					0	0	1	0	0
LINC00971	0	broad.mit.edu	37	3	84741480	84741480	+	RNA	DEL	A	A	-	rs140144338		TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr3:84741480delA	ENST00000484892.1	-	0	2354					NR_033860.1																						CCTGTCCCAGAAAAAAAAAAA	0.388													2	4	---	---	---	---					
NSUN3	63899	broad.mit.edu	37	3	93802955	93802956	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr3:93802955_93802956delAT	ENST00000314622.4	+	3	338_339	c.127_128delAT	c.(127-129)afs	p.I43fs		NM_022072.3	NP_071355.1	Q9H649	NSUN3_HUMAN	NOP2/Sun domain family, member 3	43							methyltransferase activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(10)|skin(1)	18						TTCTAGGGAGATACTAACATCT	0.332													12	52	---	---	---	---					
SNORA26	0	broad.mit.edu	37	9	89875500	89875500	+	RNA	DEL	A	A	-	rs142686931		TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr9:89875500delA	ENST00000391119.1	+	0	136																											GAGCCACAGCaaaaaaaaaaa	0.363													2	4	---	---	---	---					
CCER1	196477	broad.mit.edu	37	12	91347581	91347582	+	In_Frame_Ins	INS	-	-	TCT			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr12:91347581_91347582insTCT	ENST00000358859.2	-	1	1371_1372	c.938_939insAGA	c.(937-939)ggt>gAGAgt	p.313_313G>ES	CCER1_ENST00000548187.1_Intron	NM_152638.2	NP_689851.1			coiled-coil glutamate-rich protein 1																		catcttcgacctcttcctcctc	0.535													29	67	---	---	---	---					
TPTE2P1	0	broad.mit.edu	37	13	25527490	25527491	+	RNA	INS	-	-	AAAAAG			TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr13:25527490_25527491insAAAAAG	ENST00000429698.1	-	0	282																											AGGAAGGTTCTAAAAAAAATTT	0.252													3	3	---	---	---	---					
ACTG1	71	broad.mit.edu	37	17	79478060	79478060	+	Frame_Shift_Del	DEL	G	G	-	rs143205514	byFrequency	TCGA-EM-A4FF-01A-11D-A257-08	TCGA-EM-A4FF-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d646e7-56a5-4300-8262-fc3568731137	4189595e-d0f6-47bc-ab41-0ef3359201e1	g.chr17:79478060delG	ENST00000575842.1	-	4	1303	c.877delC	c.(877-879)tgfs	p.L293fs	ACTG1_ENST00000331925.2_Frame_Shift_Del_p.L293fs|AC139149.1_ENST00000584254.1_RNA|ACTG1_ENST00000575087.1_Frame_Shift_Del_p.L293fs|ACTG1_ENST00000573283.1_Frame_Shift_Del_p.L293fs			P63261	ACTG_HUMAN	actin, gamma 1	293					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|lung(8)|ovary(2)|prostate(5)|urinary_tract(1)	29	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			TTGGCGTACAGGTCTTTGCGG	0.592													7	99	---	---	---	---					
