Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC22A20	0	broad.mit.edu	37	11	64981812	64981812	+	RNA	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr11:64981812G>A	ENST00000525437.1	+	0	430							A6NK97	S22AK_HUMAN							ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)|endometrium(2)|large_intestine(1)|lung(2)|prostate(2)	8						TCTGGTGTGTGAGGCCCGCAC	0.667000													23	53					0	0	1	0	0
REG1B	5968	broad.mit.edu	37	2	79312700	79312700	+	Silent	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr2:79312700G>A	ENST00000305089.3	-	5	431	c.351C>T	c.(349-351)tcC>tcT	p.S117S		NM_006507.3	NP_006498.1	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta	117	C-type lectin.				cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(40)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)	51						AGGAGACCAGGGACCCACTAC	0.547000													14	150					0	0	1	0	0
HIST1H4G	8369	broad.mit.edu	37	6	26246947	26246947	+	Missense_Mutation	SNP	C	C	T			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr6:26246947C>T	ENST00000244537.4	-	1	312	c.259G>A	c.(259-261)Gtg>Atg	p.V87M		NM_003547.2	NP_003538.1	Q99525	H4G_HUMAN	histone cluster 1, H4g	87					nucleosome assembly	nucleosome|nucleus	DNA binding			breast(1)|endometrium(1)|large_intestine(1)|lung(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	7		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				ACGTAGACCACGGCCATGGCG	0.572000													49	113					0	0	1	0	0
CACUL1	143384	broad.mit.edu	37	10	120450854	120450854	+	Silent	SNP	C	C	T			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr10:120450854C>T	ENST00000369151.3	-	7	1431	c.948G>A	c.(946-948)gcG>gcA	p.A316A	CACUL1_ENST00000544392.1_5'UTR	NM_153810.4	NP_722517.3			CDK2-associated, cullin domain 1																		CAGATTCCACCGCCGGAGGGA	0.353000													20	536					0	0	1	0	0
ATP2B3	492	broad.mit.edu	37	X	152815009	152815009	+	Missense_Mutation	SNP	G	G	C			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chrX:152815009G>C	ENST00000370186.1	+	9	1677	c.1351G>C	c.(1351-1353)Ggc>Cgc	p.G451R	ATP2B3_ENST00000370181.2_Missense_Mutation_p.G451R|ATP2B3_ENST00000393842.1_Missense_Mutation_p.G451R|ATP2B3_ENST00000359149.3_Missense_Mutation_p.G465R|ATP2B3_ENST00000349466.2_Missense_Mutation_p.G465R|ATP2B3_ENST00000263519.4_Missense_Mutation_p.G465R			Q16720	AT2B3_HUMAN	ATPase, Ca++ transporting, plasma membrane 3	465					ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			NS(2)|breast(5)|endometrium(7)|large_intestine(8)|lung(23)|ovary(1)|pancreas(1)|skin(3)	50	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGAGACCATGGGCAACGCCAC	0.577000													34	448					0	0	1	0	0
SH3RF3	344558	broad.mit.edu	37	2	110065657	110065657	+	Silent	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr2:110065657G>A	ENST00000309415.6	+	8	1860	c.1860G>A	c.(1858-1860)cgG>cgA	p.R620R		NM_001099289.1	NP_001092759.1	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	620							zinc ion binding			endometrium(2)|kidney(1)|large_intestine(6)|liver(2)|lung(5)|ovary(2)	18						CTCAGGACCGGCCAACTGCCA	0.657000													4	56					0	0	1	0	0
ZNHIT2	741	broad.mit.edu	37	11	64884900	64884900	+	Missense_Mutation	SNP	C	C	T			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr11:64884900C>T	ENST00000310597.4	-	1	270	c.226G>A	c.(226-228)Gag>Aag	p.E76K	AP003068.12_ENST00000527789.1_RNA	NM_014205.2	NP_055020.1	Q9UHR6	ZNHI2_HUMAN	zinc finger, HIT-type containing 2	76							metal ion binding			breast(1)|endometrium(1)|large_intestine(2)|lung(1)|urinary_tract(1)	6						TCCTCGGTCTCGCGTTGCTGA	0.701000													3	14					0	0	1	0	0
GLUD1	2746	broad.mit.edu	37	10	88854287	88854287	+	Silent	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr10:88854287G>A	ENST00000277865.4	-	1	336	c.240C>T	c.(238-240)atC>atT	p.I80I		NM_005271.3	NP_005262.1	P00367	DHE3_HUMAN	glutamate dehydrogenase 1	80					glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding	p.I80I(1)		endometrium(3)|kidney(2)|large_intestine(4)|liver(1)|lung(11)|prostate(1)	22					L-Glutamic Acid(DB00142)|NADH(DB00157)	TGTCCTCCACGATGCTGGCGC	0.672000													113	249					0	0	1	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1605959	1605959	+	Missense_Mutation	SNP	T	T	G			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr11:1605959T>G	ENST00000382171.2	-	1	554	c.521A>C	c.(520-522)aAg>aCg	p.K174T	KRTAP5-AS1_ENST00000524947.1_RNA|KRTAP5-AS1_ENST00000534077.1_RNA|KRTAP5-AS1_ENST00000424148.1_RNA|KRTAP5-AS1_ENST00000532922.1_RNA	NM_001005922.1	NP_001005922.1	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	174	8 X 4 AA repeats of C-C-X-P.					keratin filament				endometrium(3)|kidney(1)|lung(9)|skin(2)|upper_aerodigestive_tract(1)	16		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACAGCCCCCCTTGGAGCCCCC	0.677000													22	418					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26529693	26529693	+	Missense_Mutation	SNP	G	G	C			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr11:26529693G>C	ENST00000256737.3	+	5	1327	c.475G>C	c.(475-477)Gat>Cat	p.D159H	ANO3_ENST00000537978.1_Missense_Mutation_p.D143H|ANO3_ENST00000525139.1_Missense_Mutation_p.D143H|ANO3_ENST00000531568.1_Missense_Mutation_p.D13H|ANO3_ENST00000531646.1_Missense_Mutation_p.D159H	NM_031418.2	NP_113606.2	Q9BYT9	ANO3_HUMAN	anoctamin 3	159						chloride channel complex	chloride channel activity			breast(2)|central_nervous_system(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(12)|lung(33)|ovary(2)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	68						TCTGTTCAAAGATGGCAAAAA	0.333000													8	156					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G	rs10796418	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr1:16946407T>G	ENST00000412962.1	-	0	1112																											AGCAATCTCCTCACTCAGCTG	0.672000													8	75					0	0	1	0	0
AMPD3	272	broad.mit.edu	37	11	10524303	10524303	+	Silent	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr11:10524303G>A	ENST00000444303.2	+	12	1873	c.1401G>A	c.(1399-1401)caG>caA	p.Q467Q	AMPD3_ENST00000530864.1_3'UTR|AMPD3_ENST00000396554.3_Silent_p.Q635Q	NM_001172431.1	NP_001165902.1	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3	626					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(12)|ovary(1)|prostate(3)|skin(1)	25				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		ACCTTGCTCAGATCCCCATTG	0.483000													23	573					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195505830	195505830	+	Silent	SNP	G	G	C			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr3:195505830G>C	ENST00000463781.3	-	2	13080	c.12621C>G	c.(12619-12621)acC>acG	p.T4207T	MUC4_ENST00000346145.4_Intron|MUC4_ENST00000475231.1_Silent_p.T4207T|MUC4_ENST00000349607.4_Intron	NM_018406.6	NP_060876.5	Q99102	MUC4_HUMAN	mucin 4, cell surface associated	970					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity	p.T4207T(1)		NS(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(5)|lung(23)|ovary(3)|prostate(8)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	51	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CAGGAAGAGGGGTGGCGTGAC	0.602000													7	14					0	0	1	0	0
TSPAN10	83882	broad.mit.edu	37	17	79609410	79609410	+	RNA	SNP	G	G	T	rs7406219	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr17:79609410G>T	ENST00000328585.4	+	0	62					NM_031945.3	NP_114151.3	Q9H1Z9	TSN10_HUMAN	tetraspanin 10							integral to membrane				ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			CGGCGCCTGTGCTGGGGGCTT	0.657000													11	219					3.07112e-06	3.07112e-06	1	1	0
ZCCHC2	54877	broad.mit.edu	37	18	60242771	60242771	+	Missense_Mutation	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr18:60242771G>A	ENST00000269499.5	+	13	3875	c.3457G>A	c.(3457-3459)Gcc>Acc	p.A1153T	ZCCHC2_ENST00000586834.1_Missense_Mutation_p.A832T	NM_017742.4	NP_060212.4	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	1153					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			breast(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(4)|lung(10)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	25						GTCCATGGAGGCCAATCAACA	0.453000													35	102					0	0	1	0	0
RBFADN	0	broad.mit.edu	37	18	77794529	77794529	+	Missense_Mutation	SNP	C	C	G			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr18:77794529C>G	ENST00000569722.1	+	1	184	c.34C>G	c.(34-36)Cgc>Ggc	p.R12G	RBFA_ENST00000586847.1_3'UTR|RBFA_ENST00000262197.7_Missense_Mutation_p.R12G|RBFA_ENST00000306735.5_Missense_Mutation_p.R12G																							GTGGCGCTCCCGCGCGGGTCT	0.716000													15	32					0	0	1	0	0
CSAG4	0	broad.mit.edu	37	X	151896692	151896692	+	RNA	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chrX:151896692G>A	ENST00000361201.4	-	0	248					NR_073432.1															endometrium(2)|kidney(2)|lung(1)	5						CCCCAGGACAGTGaaggcagg	0.512000													115	233					0	0	1	0	0
PAX5	5079	broad.mit.edu	37	9	36923383	36923383	+	Silent	SNP	C	C	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr9:36923383C>A	ENST00000358127.4	-	7	953	c.879G>T	c.(877-879)gtG>gtT	p.V293V	PAX5_ENST00000414447.1_Silent_p.V250V|PAX5_ENST00000520154.1_Intron|PAX5_ENST00000522003.1_Silent_p.V185V|PAX5_ENST00000377853.2_Silent_p.V293V|PAX5_ENST00000523241.1_Intron|PAX5_ENST00000520281.1_Silent_p.V250V|PAX5_ENST00000377847.2_Silent_p.V293V|PAX5_ENST00000446742.1_Silent_p.V227V|PAX5_ENST00000377852.2_Silent_p.V293V|PAX5_ENST00000523145.1_Silent_p.V185V	NM_016734.1	NP_057953.1	Q02548	PAX5_HUMAN	paired box 5	293					cell differentiation|humoral immune response|nervous system development|organ morphogenesis|spermatogenesis|transcription from RNA polymerase II promoter	nucleus	DNA binding	p.?(23)	PAX5/JAK2(18)	NS(1)|central_nervous_system(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(151)|kidney(1)|lung(10)|prostate(1)|skin(1)	171		all_cancers(2;3.46e-10)|Acute lymphoblastic leukemia(2;7.09e-56)|all_hematologic(2;6.65e-44)		GBM - Glioblastoma multiforme(29;0.0108)		GCGGGCCTGGCACACTGCTCC	0.617000			"""T, Mis, D, F, S"""	"""IGH@, ETV6, PML, FOXP1, ZNF521, ELN"""	"""NHL, ALL, B-ALL"""								16	237					1.67942e-08	1.76781e-08	1	1	0
TDRD7	23424	broad.mit.edu	37	9	100227132	100227132	+	Missense_Mutation	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr9:100227132G>A	ENST00000355295.4	+	8	1746	c.1451G>A	c.(1450-1452)gGc>gAc	p.G484D	TDRD7_ENST00000422139.2_Missense_Mutation_p.G410D	NM_014290.2	NP_055105.2	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	484					lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			endometrium(3)|kidney(4)|large_intestine(6)|lung(8)|ovary(2)|pancreas(1)|prostate(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29		Acute lymphoblastic leukemia(62;0.158)				AGGTATGTGGGCAAAGACTAT	0.388000													66	168					0	0	1	0	0
NSUN5P1	0	broad.mit.edu	37	7	75044431	75044431	+	RNA	SNP	C	C	T	rs236650	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr7:75044431C>T	ENST00000393633.2	+	0	3599																				large_intestine(1)|lung(1)	2						GCTGGACCCCCGCCAGGCTCC	0.632000													6	123					0	0	1	0	0
RP11-206L10.2	0	broad.mit.edu	37	1	700532	700532	+	RNA	SNP	T	T	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr1:700532T>A	ENST00000428504.1	-	0	1021					NR_033908.1																						aaaaaaaaaaTTCCTTTGGGA	0.453000													5	13					0	0	1	0	0
SRGAP1	57522	broad.mit.edu	37	12	64491038	64491038	+	Missense_Mutation	SNP	G	G	A			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr12:64491038G>A	ENST00000355086.3	+	15	2220	c.1696G>A	c.(1696-1698)Gat>Aat	p.D566N	SRGAP1_ENST00000543397.1_Missense_Mutation_p.D503N|RP11-196H14.2_ENST00000535594.1_RNA|SRGAP1_ENST00000357825.3_Missense_Mutation_p.D543N	NM_020762.2	NP_065813.1	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	566	Rho-GAP.				axon guidance	cytosol				breast(4)|central_nervous_system(3)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(11)|lung(26)|ovary(2)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)	65			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		TCCTTTGGCTGATGACCAGAG	0.358000													33	105					0	0	1	0	0
SNHG14	0	broad.mit.edu	37	15	25324141	25324141	+	RNA	SNP	C	C	T	rs4344720	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr15:25324141C>T	ENST00000549804.2	+	0	1376																											TCCCTTCATACGGTATGTGTT	0.473000													8	163					0	0	1	0	0
RP11-423H2.1	0	broad.mit.edu	37	5	177311024	177311024	+	RNA	SNP	C	C	T			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr5:177311024C>T	ENST00000506672.1	+	0	1321					NR_003615.2																						TTGCCCCCAGCATGAGTTAAC	0.478000													6	15					0	0	1	0	0
TRIM33	51592	broad.mit.edu	37	1	114968116	114968118	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr1:114968116_114968118delTGT	ENST00000358465.2	-	9	1731_1733	c.1648_1650delACA	c.(1648-1650)del	p.T550del	TRIM33_ENST00000450349.2_In_Frame_Del_p.T158del|TRIM33_ENST00000369543.2_In_Frame_Del_p.T550del	NM_015906.3	NP_056990.3	Q9UPN9	TRI33_HUMAN	tripartite motif containing 33	550	Poly-Thr.				negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			breast(2)|central_nervous_system(5)|cervix(1)|endometrium(7)|kidney(2)|large_intestine(10)|lung(14)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	48	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATGCTGTTGTGTTGTTGTTGTT	0.429			T	RET	papillary thyroid								10	944	---	---	---	---					
AC016995.3	0	broad.mit.edu	37	2	38710017	38710019	+	RNA	DEL	AAT	AAT	-	rs2005502	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr2:38710017_38710019delAAT	ENST00000417039.1	-	0	696																											TTCTTtaaaaaataaataaataa	0.246													3	3	---	---	---	---					
ERC2	26059	broad.mit.edu	37	3	55733470	55733472	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr3:55733470_55733472delTGG	ENST00000288221.6	-	16	3036_3038	c.2781_2783delCCA	c.(2779-2784)cat>ca	p.HH931del		NM_015576.1	NP_056391.1	O15083	ERC2_HUMAN	ELKS/RAB6-interacting/CAST family member 2	931	Poly-His.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			breast(2)|endometrium(5)|large_intestine(6)|liver(1)|lung(14)|ovary(2)|urinary_tract(1)	31				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		gtggtggtgatggtggtggtggt	0.502													11	698	---	---	---	---					
CDH10	1008	broad.mit.edu	37	5	24511559	24511560	+	Frame_Shift_Ins	INS	-	-	GCTTTGA			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr5:24511559_24511560insGCTTTGA	ENST00000264463.4	-	6	1385_1386	c.878_879insTCAAAGC	c.(877-879)gacfs	p.D293fs		NM_006727.3	NP_006718.2	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 (T2-cadherin)	293	Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(29)|lung(111)|ovary(6)|pancreas(6)|skin(4)|stomach(2)|upper_aerodigestive_tract(4)	185				STAD - Stomach adenocarcinoma(35;0.0556)		CAGCATCAGTTGCTTTGACACT	0.426										HNSCC(23;0.051)			7	308	---	---	---	---					
AC073316.1	0	broad.mit.edu	37	7	3337336	3337338	+	RNA	DEL	GAG	GAG	-	rs71881628		TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr7:3337336_3337338delGAG	ENST00000437354.1	-	0	224																											agtggaagaagaggaggaggagg	0.448													3	4	---	---	---	---					
POU6F2	11281	broad.mit.edu	37	7	39379288	39379290	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr7:39379288_39379290delCAG	ENST00000518318.2	+	5	601_603	c.559_561delCAG	c.(559-561)del	p.Q196del	POU6F2_ENST00000559001.1_In_Frame_Del_p.Q188del|POU6F2_ENST00000403058.1_In_Frame_Del_p.Q196del|POU6F2_ENST00000517348.1_3'UTR			P78424	PO6F2_HUMAN	POU class 6 homeobox 2	196	Gln-rich.			Q -> QQ (in Ref. 1; AAB49727/AAB49728).	central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			NS(3)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(4)|lung(16)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	42						gctccagctccagcagcagcagc	0.616													8	79	---	---	---	---					
SRRT	51593	broad.mit.edu	37	7	100479332	100479332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr7:100479332delG	ENST00000388793.4	+	4	524	c.304delG	c.(304-306)ggfs	p.G106fs	SRRT_ENST00000347433.4_Frame_Shift_Del_p.G106fs|SRRT_ENST00000432932.1_Frame_Shift_Del_p.G106fs|SRRT_ENST00000457580.2_Frame_Shift_Del_p.G106fs	NM_001128852.1|NM_015908.5	NP_001122324.1|NP_056992.4	Q9BXP5	SRRT_HUMAN	serrate RNA effector molecule homolog (Arabidopsis)	106				G -> GG (in Ref. 3; CAB46374).	cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding	p.G104fs*45(1)		breast(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(12)|lung(5)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	40						GCCCTATGCTGGGGGGGGTGG	0.607													7	164	---	---	---	---					
XRCC2	7516	broad.mit.edu	37	7	152346220	152346220	+	Frame_Shift_Del	DEL	A	A	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr7:152346220delA	ENST00000359321.1	-	3	435	c.350delT	c.(349-351)tgfs	p.L117fs	XRCC2_ENST00000495707.1_5'UTR	NM_005431.1	NP_005422.1	O43543	XRCC2_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 2	117					meiosis	nucleus	ATP binding|DNA binding|DNA-dependent ATPase activity	p.V118fs*5(1)		NS(1)|breast(1)|large_intestine(5)|liver(1)|lung(1)|prostate(2)	11		all_hematologic(28;0.0592)|Prostate(32;0.081)	OV - Ovarian serous cystadenocarcinoma(82;0.0423)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0429)		GCAGTACACCAAAAAAAATCT	0.393								Homologous recombination					7	301	---	---	---	---					
FAM66D	0	broad.mit.edu	37	8	11994626	11994627	+	RNA	DEL	GT	GT	-	rs138516564	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr8:11994626_11994627delGT	ENST00000434078.2	+	0	608					NR_027425.1																						gtatttgtgcgtgtgtgtgtgt	0.510													9	124	---	---	---	---					
HRCT1	646962	broad.mit.edu	37	9	35906583	35906584	+	In_Frame_Ins	INS	-	-	CCACCA	rs112821450	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr9:35906583_35906584insCCACCA	ENST00000354323.2	+	1	395_396	c.299_300insCCACCA	c.(298-300)cca>cCCACCAca	p.100_101insTT		NM_001039792.1	NP_001034881.1	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	100	His-rich.					integral to membrane		p.L100H(1)		NS(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|prostate(1)	4						cctcaccacctccaccaccacc	0.668													10	44	---	---	---	---					
ROR2	4920	broad.mit.edu	37	9	94486026	94486028	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr9:94486026_94486028delTCC	ENST00000375708.3	-	9	2946_2948	c.2748_2750delGGA	c.(2746-2751)gaa>ga	p.EE916del	ROR2_ENST00000375715.1_Intron|ROR2_ENST00000550066.1_5'UTR	NM_004560.3	NP_004551.2	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	916					negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			autonomic_ganglia(1)|breast(1)|central_nervous_system(5)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(12)|lung(31)|ovary(3)|prostate(6)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	71						GACAGAGCCTTCCTCCTCCTCCT	0.645													8	360	---	---	---	---					
AGAP11	119385	broad.mit.edu	37	10	88754812	88754813	+	RNA	INS	-	-	ATA	rs71019443		TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr10:88754812_88754813insATA	ENST00000444431.1	+	0	335				RP11-96C23.14_ENST00000444180.3_RNA|RP11-96C23.5_ENST00000433214.2_RNA			Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase activating protein 11						regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding										AATTGATGATGataataatagt	0.292													4	7	---	---	---	---					
NLRP6	171389	broad.mit.edu	37	11	281553	281555	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr11:281553_281555delGAG	ENST00000534750.1	+	4	2024_2026	c.1819_1821delGAG	c.(1819-1821)del	p.E611del	NLRP6_ENST00000312165.5_In_Frame_Del_p.E611del	NM_001276700.1	NP_001263629.1	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	611	Poly-Glu.					cytoplasm	ATP binding			breast(1)|skin(1)|upper_aerodigestive_tract(2)	4		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGAAGAGCCAGAGGAGGAGGAGG	0.670													7	459	---	---	---	---					
R3HDM2	22864	broad.mit.edu	37	12	57674205	57674207	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr12:57674205_57674207delTGC	ENST00000402412.1	-	14	1668_1670	c.1278_1280delGCA	c.(1276-1281)caa>ca	p.QQ426del	R3HDM2_ENST00000347140.3_In_Frame_Del_p.QQ412del|R3HDM2_ENST00000441731.2_In_Frame_Del_p.QQ73del|R3HDM2_ENST00000413953.2_In_Frame_Del_p.QQ139del|RP11-123K3.4_ENST00000548184.1_RNA|R3HDM2_ENST00000403821.2_In_Frame_Del_p.QQ412del|R3HDM2_ENST00000358907.2_In_Frame_Del_p.QQ412del|R3HDM2_ENST00000393811.2_In_Frame_Del_p.QQ139del			Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	412	Gln-rich.					nucleus	nucleic acid binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(3)|ovary(3)|pancreas(1)|prostate(1)|skin(1)|urinary_tract(1)	22						AGCAGGAAGTtgctgctgctgct	0.576													10	370	---	---	---	---					
EP400	57634	broad.mit.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAG	rs113304321	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr12:132547093_132547094insCAG	ENST00000333577.4	+	48	8398_8399	c.8289_8290insCAG	c.(8287-8292)caagca>caCAGagca	p.2763_2763Q>HR	EP400_ENST00000389562.2_In_Frame_Ins_p.2726_2726Q>HR|EP400_ENST00000389561.2_In_Frame_Ins_p.2727_2727Q>HR|EP400_ENST00000332482.4_In_Frame_Ins_p.2690_2690Q>HR|EP400_ENST00000330386.6_In_Frame_Ins_p.2646_2646Q>HR			Q96L91	EP400_HUMAN	E1A binding protein p400	2763	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2726Q(9)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcaacaacagcagcagca	0.564													21	188	---	---	---	---					
EXOC3L4	91828	broad.mit.edu	37	14	103570295	103570295	+	Frame_Shift_Del	DEL	C	C	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr14:103570295delC	ENST00000380069.3	+	3	1143	c.1067delC	c.(1066-1068)gcfs	p.A356fs		NM_001077594.1	NP_001071062.1	Q17RC7	EX3L4_HUMAN	exocyst complex component 3-like 4	356										cervix(2)|endometrium(2)|lung(4)|ovary(1)|skin(1)	10						TTCCTGGGCGCCCCGGGGCTG	0.721													2	4	---	---	---	---					
RP11-566K19.6	0	broad.mit.edu	37	15	23108635	23108636	+	RNA	INS	-	-	T	rs149146243	by1000genomes	TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr15:23108635_23108636insT	ENST00000557922.1	-	0	378					NR_040057.1																						caatatttaaatttttttaatt	0.262													4	4	---	---	---	---					
SNHG14	0	broad.mit.edu	37	15	25326493	25326494	+	RNA	DEL	CT	CT	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr15:25326493_25326494delCT	ENST00000546682.1	+	0	71				SNORD116-15_ENST00000384445.1_RNA|SNHG14_ENST00000549804.2_RNA	NR_003361.1																						TGAGTGAAAACTCTATACCGTC	0.465													8	863	---	---	---	---					
MESP2	145873	broad.mit.edu	37	15	90320121	90320144	+	In_Frame_Del	DEL	AGGGGCAGGGGCAAGGGCAGGGGC	AGGGGCAGGGGCAAGGGCAGGGGC	-	rs56192595		TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr15:90320121_90320144delAGGGGCAGGGGCAAGGGCAGGGGC	ENST00000341735.3	+	1	533_556	c.533_556delAGGGGCAGGGGCAAGGGCAGGGGC	c.(532-558)gag>g	p.EGQGQGQGQ178del	MESP2_ENST00000560219.1_Intron|MESP2_ENST00000558723.1_Intron	NM_001039958.1	NP_001035047.1	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog (mouse)	178					Notch signaling pathway	nucleus	DNA binding	p.Q198_G205delQGQGQGQG(1)		kidney(1)|large_intestine(2)|lung(1)|skin(1)|upper_aerodigestive_tract(1)	6	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			ACGCaggcggaggggcaggggcaagggcaggggcaggggcaggg	0.777													4	3	---	---	---	---					
EME2	197342	broad.mit.edu	37	16	1824298	1824300	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr16:1824298_1824300delTGC	ENST00000307394.7	+	3	422_424	c.422_424delTGC	c.(421-426)ttg>t	p.LL143del	EME2_ENST00000568449.1_In_Frame_Del_p.LL143del			A4GXA9	EME2_HUMAN	essential meiotic structure-specific endonuclease subunit 2	143					DNA recombination|DNA repair	nucleus	DNA binding|endonuclease activity			central_nervous_system(1)|kidney(2)|lung(5)|pancreas(1)	9						GAACAGGAATTGCTGCTGCTGCT	0.655								Direct reversal of damage;Homologous recombination					8	311	---	---	---	---					
PDILT	204474	broad.mit.edu	37	16	20370700	20370702	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr16:20370700_20370702delCCA	ENST00000302451.4	-	12	1942_1944	c.1694_1696delTGG	c.(1693-1698)gct>g	p.VA565del		NM_174924.1	NP_777584.1	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis expressed	565					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			breast(2)|central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(13)|liver(1)|lung(33)|prostate(3)|skin(1)|urinary_tract(1)	61						TTTGGCTTAGCCACCACCACCAC	0.478													7	699	---	---	---	---					
CCDC135	84229	broad.mit.edu	37	16	57731885	57731887	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr16:57731885_57731887delGGA	ENST00000360716.3	+	3	245_247	c.24_26delGGA	c.(22-27)gtg>gt	p.VE8del	RP11-405F3.4_ENST00000563062.1_RNA|CCDC135_ENST00000394337.4_In_Frame_Del_p.VE8del|CCDC135_ENST00000336825.8_In_Frame_Del_p.VE8del			Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	8						cytoplasm				breast(1)|central_nervous_system(2)|cervix(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(12)|ovary(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	30						Gggagaaggtggaggaggaggag	0.591													8	359	---	---	---	---					
TERF2IP	54386	broad.mit.edu	37	16	75690204	75690206	+	In_Frame_Del	DEL	GAA	GAA	-	rs140846731		TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr16:75690204_75690206delGAA	ENST00000300086.4	+	3	992_994	c.895_897delGAA	c.(895-897)del	p.E304del		NM_018975.3	NP_061848.2	Q9NYB0	TE2IP_HUMAN	telomeric repeat binding factor 2, interacting protein	304	Asp/Glu-rich (acidic).				negative regulation of DNA recombination at telomere|negative regulation of telomere maintenance|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of double-strand break repair via homologous recombination|telomere maintenance via telomerase|transcription, DNA-dependent	cytoplasm|nuclear telomere cap complex|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(1)	5						TGATgaggaggaagaagaagaag	0.424													13	314	---	---	---	---					
TRPV2	51393	broad.mit.edu	37	17	16335490	16335492	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr17:16335490_16335492delTGC	ENST00000338560.7	+	12	2264_2266	c.1865_1867delTGC	c.(1864-1869)gtg>g	p.VL622del	TRPV2_ENST00000583241.1_3'UTR|TRPV2_ENST00000577397.1_In_Frame_Del_p.VL192del	NM_016113.4	NP_057197.2	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel, subfamily V, member 2	622					sensory perception	integral to plasma membrane|melanosome	calcium channel activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(7)|lung(9)|ovary(1)|pancreas(1)|prostate(2)|stomach(3)	28				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CGCGGCATGGTGCTGCTGCTGCT	0.596													9	279	---	---	---	---					
SNORD3A	0	broad.mit.edu	37	17	19091424	19091425	+	RNA	INS	-	-	T			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr17:19091424_19091425insT	ENST00000365494.1	+	0	96_97																											gagaggtagcgttttctcctga	0.490													8	1882	---	---	---	---					
ROCK1P1	0	broad.mit.edu	37	18	112402	112405	+	RNA	DEL	AACC	AACC	-	rs113232824		TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr18:112402_112405delAACC	ENST00000576266.1	+	0	36_39																											CCCTGCCCCGAACCACCCGACCCC	0.711													8	18	---	---	---	---					
FFAR2	2867	broad.mit.edu	37	19	35940788	35940790	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-ET-A40T-01A-11D-A23M-08	TCGA-ET-A40T-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bcaa7922-868c-471a-b78c-f22fba89fbbc	2ca23f5a-c310-4dc8-9416-444b90fcbf71	g.chr19:35940788_35940790delCTG	ENST00000599180.1	+	2	252_254	c.172_174delCTG	c.(172-174)del	p.L62del	FFAR2_ENST00000601590.1_Intron|FFAR2_ENST00000246549.2_In_Frame_Del_p.L62del			O15552	FFAR2_HUMAN	free fatty acid receptor 2	62						integral to plasma membrane	G-protein coupled receptor activity|lipid binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(7)|lung(6)|skin(1)|urinary_tract(1)	22	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CGACCTCCTCCTGCTGCTGCTGC	0.645													9	180	---	---	---	---					
