Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MT-CO2	4513	broad.mit.edu	37	MT	7976	7976	+	Missense_Mutation	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chrM:7976G>A	ENST00000361739.1	+	1	391	c.391G>A	c.(391-393)Ggc>Agc	p.G131S						mitochondrially encoded cytochrome c oxidase II											endometrium(5)|kidney(8)|lung(2)|pancreas(3)|prostate(1)	19						TCCTAGAACCAGGCGACCTGC	0.468000													5	32					0	0	1	0	0
PHF17	0	broad.mit.edu	37	4	129770169	129770169	+	Missense_Mutation	SNP	A	A	G			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr4:129770169A>G	ENST00000226319.6	+	5	611	c.331A>G	c.(331-333)Agg>Ggg	p.R111G	PHF17_ENST00000413543.2_Missense_Mutation_p.R111G|PHF17_ENST00000452328.2_Splice_Site|PHF17_ENST00000512960.1_Missense_Mutation_p.R111G|PHF17_ENST00000511647.1_Missense_Mutation_p.R111G	NM_199320.2	NP_955352.1	Q6IE81	JADE1_HUMAN		111					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding			NS(1)|breast(2)|endometrium(1)|kidney(2)|large_intestine(10)|lung(10)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	29						CATGTTCATCAGGCCCAAGAA	0.507000													4	107					0	0	1	0	0
DDX52	11056	broad.mit.edu	37	17	35992180	35992180	+	Missense_Mutation	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr17:35992180G>A	ENST00000349699.2	-	4	609	c.566C>T	c.(565-567)aCg>aTg	p.T189M	DDX52_ENST00000394367.3_Missense_Mutation_p.T81M	NM_007010.3	NP_008941.2	Q9Y2R4	DDX52_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	189						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			biliary_tract(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(3)|lung(5)|ovary(1)|skin(3)	17		Breast(25;0.00637)|Ovarian(249;0.15)				TTGGATTGGCGTAGGCATTTG	0.418000													5	116					0	0	1	0	0
TNFRSF14	8764	broad.mit.edu	37	1	2493197	2493197	+	Missense_Mutation	SNP	G	G	T	rs145758620		TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr1:2493197G>T	ENST00000355716.4	+	6	936	c.637G>T	c.(637-639)Gtc>Ttc	p.V213F		NM_003820.2	NP_003811.2	Q92956	TNR14_HUMAN	tumor necrosis factor receptor superfamily, member 14	213					immune response|interspecies interaction between organisms|T cell costimulation		tumor necrosis factor receptor activity			kidney(1)	1	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;1.11e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000326)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.199)		CCTCGTCATCGTCATTGTTTG	0.602000			"""Mis, N, F"""		follicular lymphoma								4	104					0.00909568	0.00909568	1	1	0
FRG1B	0	broad.mit.edu	37	20	29628278	29628278	+	Missense_Mutation	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr20:29628278G>A	ENST00000278882.3	+	6	660	c.280G>A	c.(280-282)Gca>Aca	p.A94T	FRG1B_ENST00000358464.4_Missense_Mutation_p.A94T|FRG1B_ENST00000439954.2_Missense_Mutation_p.A99T																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGCAATGAAGCAGGGGACAT	0.373000													4	102					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87031618	87031618	+	Missense_Mutation	SNP	C	C	T			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr1:87031618C>T	ENST00000370563.3	+	6	911	c.869C>T	c.(868-870)aCa>aTa	p.T290I	CLCA4_ENST00000263723.5_Missense_Mutation_p.T3I	NM_012128.3	NP_036260.2	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	290						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(7)|liver(2)|lung(21)|ovary(2)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	44		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CCCATGGTGACACCACCTCCT	0.408000													36	84					0	0	1	0	0
NAIF1	203245	broad.mit.edu	37	9	130825860	130825860	+	Silent	SNP	G	G	C			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr9:130825860G>C	ENST00000373078.4	-	2	1050	c.831C>G	c.(829-831)ggC>ggG	p.G277G	NAIF1_ENST00000488519.1_5'UTR	NM_197956.3	NP_931045.1	Q69YI7	NAIF1_HUMAN	nuclear apoptosis inducing factor 1	277					apoptosis|induction of apoptosis	nucleus				central_nervous_system(1)|endometrium(3)|large_intestine(2)|lung(8)|upper_aerodigestive_tract(1)|urinary_tract(1)	16						CAGCCTGTGTGCCCTCCATGG	0.642000													20	29					0	0	1	0	0
RP11-423O2.5	0	broad.mit.edu	37	1	142803342	142803342	+	RNA	SNP	T	T	G			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr1:142803342T>G	ENST00000423385.1	-	0	1623																											TGCACAAtttttttatgaagg	0.378000													3	8					0	0	1	0	0
MT-RNR2	0	broad.mit.edu	37	MT	2128	2128	+	RNA	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chrM:2128G>A	ENST00000387347.2	+	0	458					NR_039705.1																						CTTTGGACACTAGGAAAAAAC	0.383000													6	36					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628299	29628299	+	Missense_Mutation	SNP	A	A	G			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr20:29628299A>G	ENST00000278882.3	+	6	681	c.301A>G	c.(301-303)Agt>Ggt	p.S101G	FRG1B_ENST00000358464.4_Missense_Mutation_p.S101G|FRG1B_ENST00000439954.2_Missense_Mutation_p.S106G																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						AGAAGCAAAAAGTAAAACAGC	0.363000													4	85					0	0	1	0	0
DPY19L2	283417	broad.mit.edu	37	12	63976288	63976288	+	Missense_Mutation	SNP	C	C	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr12:63976288C>A	ENST00000324472.4	-	18	1806	c.1623G>T	c.(1621-1623)ttG>ttT	p.L541F	DPY19L2_ENST00000413230.2_5'UTR	NM_173812.4	NP_776173.3	Q6NUT2	D19L2_HUMAN	dpy-19-like 2 (C. elegans)	541					multicellular organismal development|spermatid development	integral to membrane				breast(2)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(8)|lung(19)|ovary(1)|prostate(5)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	45			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		CTAACAACTGCAATGTGTGAA	0.308000													15	47					7.93312e-07	8.36194e-07	1	1	0
BPIFB6	128859	broad.mit.edu	37	20	31622089	31622089	+	Missense_Mutation	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr20:31622089G>A	ENST00000349552.1	+	3	295	c.295G>A	c.(295-297)Ggc>Agc	p.G99S		NM_174897.2	NP_777557.1	Q8NFQ5	BPIL3_HUMAN	BPI fold containing family B, member 6	99						extracellular region	lipid binding										GACCGTCACTGGCAAGAGGTG	0.542000													6	102					0	0	1	0	0
SDHAP1	0	broad.mit.edu	37	3	195711423	195711423	+	RNA	SNP	A	A	G			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr3:195711423A>G	ENST00000427841.1	-	0	524					NR_003264.2																						CTCTTGTACTAGAAACAGACC	0.552000													4	29					0	0	1	0	0
ZNF860	344787	broad.mit.edu	37	3	32031910	32031910	+	Missense_Mutation	SNP	A	A	G			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr3:32031910A>G	ENST00000360311.4	+	2	1888	c.1339A>G	c.(1339-1341)Act>Gct	p.T447A		NM_001137674.2	NP_001131146.2	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	447					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(3)|lung(4)|ovary(1)	8						TCATTGGCGAACTCATACTGG	0.378000													10	51					0	0	1	0	0
ARHGAP4	393	broad.mit.edu	37	X	153186199	153186199	+	Missense_Mutation	SNP	C	C	T			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chrX:153186199C>T	ENST00000370028.3	-	5	619	c.562G>A	c.(562-564)Gcc>Acc	p.A188T	ARHGAP4_ENST00000393721.1_Intron|ARHGAP4_ENST00000370016.1_Missense_Mutation_p.A167T|ARHGAP4_ENST00000350060.5_Missense_Mutation_p.A188T|ARHGAP4_ENST00000537206.1_Missense_Mutation_p.A165T	NM_001164741.1	NP_001158213.1	P98171	RHG04_HUMAN	Rho GTPase activating protein 4	188					apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(2)|endometrium(2)|large_intestine(1)|lung(7)|skin(1)|upper_aerodigestive_tract(1)	14	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGCCGCTCGGCCTCCCGGAGC	0.652000													43	12					0	0	1	0	0
IGKV1-5	0	broad.mit.edu	37	2	89247307	89247307	+	RNA	SNP	C	C	G			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr2:89247307C>G	ENST00000496168.1	-	0	168																											TGTGTCCTGACTGGGTCTGAC	0.562000													6	143					0	0	1	0	0
MT-RNR2	0	broad.mit.edu	37	MT	2455	2455	+	RNA	SNP	T	T	C			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chrM:2455T>C	ENST00000387347.2	+	0	785					NR_039705.1																						CATAAGGAAAGGTTAAAAAAA	0.433000													7	32					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39008171	39008171	+	Missense_Mutation	SNP	G	G	C			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr19:39008171G>C	ENST00000355481.4	+	66	9989	c.9858G>C	c.(9856-9858)gaG>gaC	p.E3286D	RYR1_ENST00000359596.3_Missense_Mutation_p.E3286D|RYR1_ENST00000360985.3_Missense_Mutation_p.E3286D	NM_000540.2|NM_001042723.1	NP_000531.2|NP_001036188.1	P21817	RYR1_HUMAN	ryanodine receptor 1 (skeletal)	3286					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GATGGTGGGAGCGCGGGCCCG	0.682000													16	18					0	0	1	0	0
ALG1L2	0	broad.mit.edu	37	3	129817144	129817144	+	RNA	SNP	G	G	T			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr3:129817144G>T	ENST00000507643.1	+	0	726							C9J202	AG1L2_HUMAN							biosynthetic process		transferase activity, transferring glycosyl groups										TGCGGGAGTCGCAGCAGCTCT	0.527000													3	44					0.00909568	0.00909568	1	1	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249370	71249370	+	Missense_Mutation	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr11:71249370G>A	ENST00000398534.3	+	1	300	c.269G>A	c.(268-270)tGc>tAc	p.C90Y		NM_021046.2	NP_066384.2	O75690	KRA58_HUMAN	keratin associated protein 5-8	90	9 X 4 AA repeats of C-C-X-P.					extracellular region|keratin filament	structural constituent of epidermis			cervix(1)|endometrium(1)|lung(2)|skin(1)|stomach(1)	6						CAGTGCAGCTGCTATAAGCCC	0.637000													8	285					0	0	1	0	0
ASB15	142685	broad.mit.edu	37	7	123254610	123254610	+	Silent	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr7:123254610G>A	ENST00000451558.1	+	6	575	c.54G>A	c.(52-54)caG>caA	p.Q18Q	RP11-390E23.3_ENST00000422401.1_RNA|RP11-390E23.3_ENST00000440504.1_RNA|ASB15_ENST00000275699.3_Silent_p.Q18Q|ASB15_ENST00000434204.1_Silent_p.Q18Q|ASB15_ENST00000540573.1_Silent_p.Q18Q|ASB15_ENST00000451215.1_Silent_p.Q18Q			Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box containing 15	18					intracellular signal transduction					breast(1)|kidney(1)|large_intestine(1)|lung(6)|skin(3)	12						ATGATATTCAGCTAAGTATTC	0.353000													10	214					0	0	1	0	0
MST1L	0	broad.mit.edu	37	1	17083652	17083652	+	RNA	SNP	C	C	T	rs113710576	by1000genomes	TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr1:17083652C>T	ENST00000455405.2	-	0	936																											aaatctcaaccttgagtacaa	0.388000													5	32					0	0	1	0	0
TMEM163	81615	broad.mit.edu	37	2	135223748	135223748	+	Missense_Mutation	SNP	T	T	C			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr2:135223748T>C	ENST00000281924.6	-	6	668	c.604A>G	c.(604-606)Atc>Gtc	p.I202V		NM_030923.4	NP_112185.1	Q8TC26	TM163_HUMAN	transmembrane protein 163	202						integral to membrane				endometrium(1)|large_intestine(5)|lung(8)|stomach(1)|urinary_tract(1)	16				BRCA - Breast invasive adenocarcinoma(221;0.154)		ACGGCCAGGATGCTGCAAAGA	0.502000													3	35					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11098863	11098863	+	RNA	SNP	A	A	G	rs75318310	by1000genomes	TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr21:11098863A>G	ENST00000470054.1	-	0	62									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ccagcctccaactcccccttc	0.627000													4	19					0	0	1	0	0
NDUFA9	4704	broad.mit.edu	37	12	4766977	4766977	+	Missense_Mutation	SNP	A	A	T			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr12:4766977A>T	ENST00000266544.5	+	4	402	c.382A>T	c.(382-384)Aat>Tat	p.N128Y		NM_005002.4	NP_004993.1	Q16795	NDUA9_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa	128					mitochondrial electron transport, NADH to ubiquinone|sodium ion transport	mitochondrial matrix|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity|protein binding			NS(1)|breast(1)|endometrium(3)|large_intestine(4)|lung(9)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	21					NADH(DB00157)	TGTGGTCATCAATCTTATTGG	0.423000													25	89					0	0	1	0	0
MT-TL1	0	broad.mit.edu	37	MT	3244	3244	+	RNA	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chrM:3244G>A	ENST00000386347.1	+	0	15																											aagatggcagagcccggtaat	0.438000													4	51					0	0	1	0	0
CS	1431	broad.mit.edu	37	12	56668575	56668575	+	Missense_Mutation	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr12:56668575G>A	ENST00000548567.1	-	10	1278	c.808C>T	c.(808-810)Ctc>Ttc	p.L270F	CS_ENST00000542324.2_Missense_Mutation_p.L323F|CS_ENST00000351328.3_Missense_Mutation_p.L336F			O75390	CISY_HUMAN	citrate synthase	336					cellular carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	citrate (Si)-synthase activity			breast(2)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(2)|lung(4)|ovary(1)|skin(1)	17		Myeloproliferative disorder(1001;0.000374)		BRCA - Breast invasive adenocarcinoma(357;6.17e-07)		CCTGAGTTGAGTGTGTTCCAG	0.433000													5	67					0	0	1	0	0
SLC26A10	65012	broad.mit.edu	37	12	58019099	58019099	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr12:58019099C>T	ENST00000320442.4	+	12	1770	c.1459C>T	c.(1459-1461)Cag>Tag	p.Q487*	SLC26A10_ENST00000379218.2_3'UTR|SLC26A10_ENST00000490243.1_3'UTR	NM_133489.2	NP_597996.2	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	487	STAS.					integral to membrane	antiporter activity			NS(1)|autonomic_ganglia(1)|central_nervous_system(1)|endometrium(5)|large_intestine(4)|lung(7)	19	Melanoma(17;0.122)					AGAAGTGGTGCAGGTGAGGGA	0.562000													4	88					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16957475	16957475	+	RNA	SNP	G	G	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr1:16957475G>A	ENST00000412962.1	-	0	203																											GGGCCTCTGCGGGGCGAACGG	0.716000													3	6					0	0	1	0	0
ETAA1	54465	broad.mit.edu	37	2	67631713	67631713	+	Silent	SNP	A	A	G			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr2:67631713A>G	ENST00000272342.5	+	5	2029	c.1899A>G	c.(1897-1899)tcA>tcG	p.S633S	ETAA1_ENST00000462772.1_Intron	NM_019002.3	NP_061875.2	Q9NY74	ETAA1_HUMAN	Ewing tumor-associated antigen 1	633						cytoplasm|nucleus				autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(10)|lung(9)|ovary(3)|prostate(1)|stomach(3)|urinary_tract(1)	33						GTAAGACATCAGAAAGTATAT	0.363000													5	154					0	0	1	0	0
CDK14	5218	broad.mit.edu	37	7	90613533	90613533	+	Missense_Mutation	SNP	G	G	C			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr7:90613533G>C	ENST00000406263.1	+	9	1322	c.880G>C	c.(880-882)Gat>Cat	p.D294H	CDK14_ENST00000380050.3_Missense_Mutation_p.D340H|CDK14_ENST00000436577.2_Missense_Mutation_p.D211H|CDK14_ENST00000265741.3_Missense_Mutation_p.D322H			O94921	CDK14_HUMAN	cyclin-dependent kinase 14	340	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			breast(2)|cervix(1)|endometrium(2)|kidney(3)|large_intestine(6)|liver(1)|lung(12)|ovary(1)|skin(4)	32						AGACATTCAGGATCAACTTGA	0.363000													6	145					0	0	1	0	0
SPRR4	163778	broad.mit.edu	37	1	152944387	152944389	+	In_Frame_Del	DEL	GCG	GCG	-	rs73010454	byFrequency	TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr1:152944387_152944389delGCG	ENST00000328051.2	+	2	70_72	c.21_23delGCG	c.(19-24)cag>ca	p.QR7del		NM_173080.1	NP_775103.1	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	7	Gln-rich.				keratinization|peptide cross-linking	cell cortex				lung(1)|prostate(1)	2	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			agcagcagcagcggcagcagcag	0.552													7	160	---	---	---	---					
AC006988.1	0	broad.mit.edu	37	7	88269891	88269891	+	RNA	DEL	T	T	-			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr7:88269891delT	ENST00000390184.1	+	0	57																											GAAGGAGCACTTTTTTTTTTT	0.313													2	4	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149518533	149518533	+	RNA	DEL	C	C	-	rs11353848		TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr7:149518533delC	ENST00000378016.2	+	0	12602							A2VEC9	SSPO_HUMAN	SCO-spondin						cell adhesion	extracellular space	peptidase inhibitor activity					Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GAGGAGCAGTCCCAGAGCCAG	0.711													4	2	---	---	---	---					
FOLH1B	219595	broad.mit.edu	37	11	89405323	89405326	+	RNA	DEL	TTTA	TTTA	-	rs34562444		TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr11:89405323_89405326delTTTA	ENST00000532352.1	+	0	1114							Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B						proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(7)|lung(26)|ovary(4)|skin(4)|urinary_tract(2)	48						aattatattgtttatttatttttg	0.230													4	6	---	---	---	---					
RP11-74M13.4	0	broad.mit.edu	37	12	57265997	57265997	+	RNA	DEL	T	T	-			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr12:57265997delT	ENST00000557452.1	+	0	1887																											CTTTTCTGTATTTTACTGTGA	0.398													2	4	---	---	---	---					
HERC2P9	0	broad.mit.edu	37	15	28929354	28929355	+	RNA	INS	-	-	A			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr15:28929354_28929355insA	ENST00000528584.1	+	0	1891_1892					NR_036443.1																						TTCAGAGATTCTCATTGGGAAG	0.421													5	10	---	---	---	---					
MAP2K1	5604	broad.mit.edu	37	15	66729094	66729099	+	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			TCGA-FY-A76V-01A-11D-A397-08	TCGA-FY-A76V-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	179619c3-8cd7-42b3-90c6-c2f64f4c865e	3d81374b-9d1a-481b-a560-996e5cadd36d	g.chr15:66729094_66729099delTGGAGA	ENST00000307102.5	+	3	833_838	c.302_307delTGGAGA	c.(301-309)ctc>c	p.LEI101del		NM_002755.3	NP_002746.1	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	101	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			endometrium(2)|kidney(1)|large_intestine(1)|lung(6)|prostate(1)|skin(8)|urinary_tract(1)	20						CTAATTCATCTGGAGATCAAACCCGC	0.447													22	50	---	---	---	---					
