Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf162	128346	broad.mit.edu	37	1	112020367	112020367	+	Silent	SNP	C	C	G			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr1:112020367C>G	ENST00000343534.5	+	5	547	c.297C>G	c.(295-297)gcC>gcG	p.A99A	C1orf162_ENST00000464591.1_Intron|C1orf162_ENST00000369718.3_Silent_p.A74A	NM_174896.2	NP_777556.1	Q8NEQ5	CA162_HUMAN	chromosome 1 open reading frame 162	99						integral to membrane				NS(1)|kidney(1)|large_intestine(1)|lung(1)|ovary(1)	5		all_cancers(81;0.00116)|all_epithelial(167;0.000761)|all_lung(203;0.00277)|Lung NSC(277;0.0043)		Lung(183;0.0236)|Colorectal(144;0.0286)|all cancers(265;0.0572)|Epithelial(280;0.0862)|COAD - Colon adenocarcinoma(174;0.112)|LUSC - Lung squamous cell carcinoma(189;0.134)		AGCCCCAGGCCCCAGATCCTC	0.552000													16	92					0	0	1	0	0
TMEM67	91147	broad.mit.edu	37	8	94767325	94767325	+	Silent	SNP	G	G	A			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr8:94767325G>A	ENST00000453321.3	+	1	241	c.183G>A	c.(181-183)tcG>tcA	p.S61S	TMEM67_ENST00000409623.3_5'UTR	NM_153704.5	NP_714915.3	Q5HYA8	MKS3_HUMAN	transmembrane protein 67	61					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			breast(3)|endometrium(8)|kidney(5)|large_intestine(4)|liver(2)|lung(15)|ovary(2)|skin(1)|urinary_tract(1)	41	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			CCGCCCTCTCGTGTGTTCCTT	0.567000													4	138					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29625934	29625934	+	Missense_Mutation	SNP	C	C	T			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr20:29625934C>T	ENST00000278882.3	+	5	558	c.178C>T	c.(178-180)Cat>Tat	p.H60Y	FRG1B_ENST00000358464.4_Missense_Mutation_p.H60Y|FRG1B_ENST00000439954.2_Missense_Mutation_p.H65Y																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ACTTGTTGGGCATTCAGATGC	0.338000													5	70					0	0	1	0	0
HNRNPD	3184	broad.mit.edu	37	4	83280727	83280727	+	Missense_Mutation	SNP	T	T	C			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr4:83280727T>C	ENST00000313899.7	-	3	633	c.356A>G	c.(355-357)aAa>aGa	p.K119R	HNRNPD_ENST00000541060.1_Intron|HNRNPD_ENST00000353341.4_Missense_Mutation_p.K119R|HNRNPD_ENST00000543098.1_Missense_Mutation_p.K67R|HNRNPD_ENST00000352301.4_Missense_Mutation_p.K100R	NM_031370.2	NP_112738.1	Q14103	HNRPD_HUMAN	heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	119	RRM 1.				nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|RNA catabolic process|transcription, DNA-dependent	cytosol|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|telomeric DNA binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(1)	7						TTCACCAAATTTGGAAAAGTA	0.383000													15	69					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29625956	29625956	+	Missense_Mutation	SNP	G	G	A	rs147809085		TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr20:29625956G>A	ENST00000278882.3	+	5	580	c.200G>A	c.(199-201)aGa>aAa	p.R67K	FRG1B_ENST00000358464.4_Missense_Mutation_p.R67K|FRG1B_ENST00000439954.2_Missense_Mutation_p.R72K														p.R67K(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATTGGACCAAGAGAACAATGG	0.338000													4	83					0	0	1	0	0
FHOD3	80206	broad.mit.edu	37	18	34261476	34261476	+	Missense_Mutation	SNP	G	G	A			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr18:34261476G>A	ENST00000257209.4	+	12	1510	c.1388G>A	c.(1387-1389)cGg>cAg	p.R463Q	FHOD3_ENST00000445677.1_Missense_Mutation_p.R425Q|FHOD3_ENST00000359247.4_Missense_Mutation_p.R463Q|FHOD3_ENST00000590592.1_Missense_Mutation_p.R638Q|FHOD3_ENST00000591635.1_Intron	NM_025135.2	NP_079411.2	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	463					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			NS(1)|breast(5)|central_nervous_system(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(25)|liver(2)|lung(29)|ovary(3)|prostate(4)|skin(5)|upper_aerodigestive_tract(1)	90		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				GAGAGGCGGCGGCAGGAGAGA	0.433000													11	47					0	0	1	0	0
PTH2	113091	broad.mit.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr19:49926533G>C	ENST00000270631.1	-	1	165	c.64C>G	c.(64-66)Ctg>Gtg	p.L22V		NM_178449.3	NP_848544.1	Q96A98	TIP39_HUMAN	parathyroid hormone 2	22					neuropeptide signaling pathway	extracellular region		p.L22V(2)		endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(262;0.0015)|GBM - Glioblastoma multiforme(486;0.044)|Lung(386;0.0785)|LUSC - Lung squamous cell carcinoma(496;0.0836)		GGCACCACcagcagcagcagc	0.692000													3	27					0	0	1	0	0
YBX2	51087	broad.mit.edu	37	17	7193617	7193617	+	Missense_Mutation	SNP	G	G	A			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr17:7193617G>A	ENST00000007699.5	-	5	760	c.697C>T	c.(697-699)Cgg>Tgg	p.R233W		NM_015982.3	NP_057066.2	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	233	Pro-rich.|Required for mRNA-binding.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding			cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(2)|skin(3)	12						CGCACAAACCGCCGTCGGTAG	0.652000													65	206					0	0	1	0	0
GBA2	57704	broad.mit.edu	37	9	35748347	35748347	+	Missense_Mutation	SNP	A	A	C			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr9:35748347A>C	ENST00000378094.4	-	1	868	c.355T>G	c.(355-357)Ttg>Gtg	p.L119V	GBA2_ENST00000545786.1_Missense_Mutation_p.L119V|GBA2_ENST00000378103.3_Missense_Mutation_p.L119V			Q9HCG7	GBA2_HUMAN	glucosidase, beta (bile acid) 2	119					bile acid metabolic process|glucosylceramide catabolic process|O-glycoside catabolic process	integral to membrane|microsome|plasma membrane|smooth endoplasmic reticulum	beta-glucosidase activity|glucosylceramidase activity			NS(1)|kidney(3)|large_intestine(5)|lung(5)|ovary(4)|skin(3)	21	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ACTCACCTCAAGCCCATGCCT	0.483000													13	39					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713773	142713773	+	RNA	SNP	C	C	G			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr1:142713773C>G	ENST00000369381.2	-	0	832																											TCTTTTTCCACATTGTCATTT	0.284000													4	34					0	0	1	0	0
RP11-423O2.5	0	broad.mit.edu	37	1	142803543	142803543	+	RNA	SNP	C	C	T			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr1:142803543C>T	ENST00000423385.1	-	0	1422																											TGTTGGAATTCCTGATGAATC	0.269000													5	114					0	0	1	0	0
S100PBP	64766	broad.mit.edu	37	1	33292091	33292091	+	Nonsense_Mutation	SNP	A	A	T			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr1:33292091A>T	ENST00000373475.5	+	3	645	c.391A>T	c.(391-393)Aaa>Taa	p.K131*	S100PBP_ENST00000373476.1_Nonsense_Mutation_p.K131*|S100PBP_ENST00000398243.3_Nonsense_Mutation_p.K131*|S100PBP_ENST00000356689.3_3'UTR	NM_022753.3	NP_073590.2	Q96BU1	S1PBP_HUMAN	S100P binding protein	131						nucleus	calcium-dependent protein binding			endometrium(2)|kidney(1)|large_intestine(2)|lung(8)|ovary(1)|prostate(1)|stomach(1)	16		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				AGCTCATACTAAACCATTAAA	0.413000													10	38					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713774	142713774	+	RNA	SNP	A	A	G			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr1:142713774A>G	ENST00000369381.2	-	0	831																											CTTTTTCCACATTGTCATTTT	0.284000													4	33					0	0	1	0	0
ASB10	136371	broad.mit.edu	37	7	150878400	150878400	+	Missense_Mutation	SNP	G	G	A			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr7:150878400G>A	ENST00000422024.1	-	3	990	c.865C>T	c.(865-867)Cgc>Tgc	p.R289C	ASB10_ENST00000434669.1_Missense_Mutation_p.R289C|ASB10_ENST00000377867.3_Missense_Mutation_p.R229C|ASB10_ENST00000275838.1_Missense_Mutation_p.R244C|ASB10_ENST00000420175.2_Missense_Mutation_p.R244C	NM_001142459.1	NP_001135931.2	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box containing 10	244					intracellular signal transduction					NS(1)|endometrium(2)|lung(7)|skin(2)	12			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCGGCATTGCGGGCATCAGGA	0.657000													3	45					0	0	1	0	0
PLEKHM1P	0	broad.mit.edu	37	17	62818136	62818136	+	RNA	SNP	G	G	C			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr17:62818136G>C	ENST00000582986.1	-	0	362					NR_024386.1																						CTGAAGAATGGGAAATGGAAT	0.572000													5	40					0	0	1	0	0
FOXD2	2306	broad.mit.edu	37	1	47904295	47904295	+	Missense_Mutation	SNP	A	A	G			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr1:47904295A>G	ENST00000334793.5	+	1	2607	c.488A>G	c.(487-489)tAc>tGc	p.Y163C		NM_004474.3	NP_004465.3	O60548	FOXD2_HUMAN	forkhead box D2	163					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(4)	4				READ - Rectum adenocarcinoma(2;0.0908)		CGCTTCCCCTACTACCGGGAG	0.622000													43	108					0	0	1	0	0
LINC00842	0	broad.mit.edu	37	10	47133709	47133709	+	RNA	SNP	G	G	C			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr10:47133709G>C	ENST00000422732.2	-	0	435					NR_033957.1																						GAACCACTTCGACCTCTTTGG	0.468000													4	89					0	0	1	0	0
SOGA1	140710	broad.mit.edu	37	20	35444296	35444296	+	Nonsense_Mutation	SNP	G	G	A			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr20:35444296G>A	ENST00000237536.4	-	5	1890	c.1549C>T	c.(1549-1551)Cag>Tag	p.Q517*	SOGA1_ENST00000357779.3_Nonsense_Mutation_p.Q279*|SOGA1_ENST00000279034.5_Nonsense_Mutation_p.Q279*|SOGA1_ENST00000456801.2_Nonsense_Mutation_p.Q120*	NM_080627.2	NP_542194.2	O94964	K0889_HUMAN	suppressor of glucose, autophagy associated 1	279										endometrium(5)|kidney(1)|lung(21)|urinary_tract(1)	28						TCGACAAACTGCAGGTGTCGC	0.667000													5	11					0	0	1	0	0
BTD	686	broad.mit.edu	37	3	15686446	15686446	+	Silent	SNP	T	T	C			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr3:15686446T>C	ENST00000383778.4	+	4	1381	c.1023T>C	c.(1021-1023)ttT>ttC	p.F341F	BTD_ENST00000303498.5_Silent_p.F361F|BTD_ENST00000437172.1_Silent_p.F363F|BTD_ENST00000449107.1_Silent_p.F363F			P43251	BTD_HUMAN	biotinidase	361	CN hydrolase.				central nervous system development|epidermis development|nitrogen compound metabolic process	extracellular space	biotin carboxylase activity|biotinidase activity			breast(2)|endometrium(3)|large_intestine(2)|lung(9)|prostate(1)|skin(1)	18						ATAGTAAGTTTTTAAAAATTT	0.473000													30	93					0	0	1	0	0
WAPAL	23063	broad.mit.edu	37	10	88260115	88260115	+	Silent	SNP	C	C	T			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr10:88260115C>T	ENST00000298767.5	-	3	1357	c.885G>A	c.(883-885)acG>acA	p.T295T		NM_015045.2	NP_055860.1	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog (Drosophila)	295	Mediates interaction with the cohesin complex.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			breast(2)|endometrium(2)|kidney(5)|large_intestine(6)|lung(13)|ovary(2)|stomach(1)	31						CCCTACAGTACGTCCTACAGT	0.413000													19	119					0	0	1	0	0
PPP1R9B	84687	broad.mit.edu	37	17	48221042	48221042	+	Missense_Mutation	SNP	C	C	T			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr17:48221042C>T	ENST00000316878.6	-	5	1542	c.1540G>A	c.(1540-1542)Ggg>Agg	p.G514R	PPP1R9B_ENST00000501501.2_5'UTR|AC002401.1_ENST00000451776.1_RNA	NM_032595.3	NP_115984.3	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	514	Interacts with RGS2 (By similarity).|PDZ.				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity			endometrium(1)|kidney(1)|large_intestine(1)|lung(4)|skin(1)	8						ATGTCTGCCCCGGCGCCCATG	0.627000													21	84					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913377		TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr7:140453136A>T	ENST00000288602.6	-	15	1859	c.1799T>A	c.(1798-1800)gTg>gAg	p.V600E		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	v-raf murine sarcoma viral oncogene homolog B	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(15453)|p.V600K(252)|p.V600R(44)|p.V600D(16)|p.V600A(12)|p.V600_K601>E(12)|p.V600G(11)|p.T599_R603>I(2)|p.V600Q(2)|p.V600_S605>EK(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insDFGLAT(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	NS(588)|adrenal_gland(3)|autonomic_ganglia(3)|biliary_tract(29)|bone(7)|breast(21)|central_nervous_system(99)|cervix(6)|endometrium(33)|eye(72)|gastrointestinal_tract_(site_indeterminate)(2)|genital_tract(4)|haematopoietic_and_lymphoid_tissue(436)|kidney(3)|large_intestine(6953)|liver(17)|lung(192)|oesophagus(4)|ovary(275)|pancreas(15)|pituitary(1)|prostate(25)|salivary_gland(1)|skin(6285)|small_intestine(12)|soft_tissue(40)|stomach(11)|testis(7)|thyroid(12220)|upper_aerodigestive_tract(13)|urinary_tract(3)	27380	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600D(K029AX_SKIN)|V600D(WM115_SKIN)|V600D(WM2664_SKIN)|V600E(8505C_THYROID)|V600E(A101D_SKIN)|V600E(A2058_SKIN)|V600E(A375_SKIN)|V600E(A673_BONE)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(BCPAP_THYROID)|V600E(BHT101_THYROID)|V600E(BT474_BREAST)|V600E(C32_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(COLO205_LARGE_INTESTINE)|V600E(COLO679_SKIN)|V600E(COLO741_SKIN)|V600E(COLO783_SKIN)|V600E(COLO800_SKIN)|V600E(COLO818_SKIN)|V600E(COLO829_SKIN)|V600E(COLO849_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(DU4475_BREAST)|V600E(ES2_OVARY)|V600E(G361_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(HS294T_SKIN)|V600E(HS695T_SKIN)|V600E(HS939T_SKIN)|V600E(IGR1_SKIN)|V600E(IGR37_SKIN)|V600E(IGR39_SKIN)|V600E(K029AX_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(LOXIMVI_SKIN)|V600E(MALME3M_SKIN)|V600E(MELHO_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(RKO_LARGE_INTESTINE)|V600E(RPMI7951_SKIN)|V600E(RVH421_SKIN)|V600E(SH4_SKIN)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(SKHEP1_LIVER)|V600E(SKMEL24_SKIN)|V600E(SKMEL28_SKIN)|V600E(SKMEL5_SKIN)|V600E(SW1417_LARGE_INTESTINE)|V600E(UACC257_SKIN)|V600E(UACC62_SKIN)|V600E(WM793_SKIN)|V600E(WM88_SKIN)|V600E(WM983B_SKIN)	61	"""Mis, T, O"""	"""AKAP9, KIAA1549"""	"""melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma"""		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				13	53					0	0	1	0	0
LINC00969	0	broad.mit.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs12107841	by1000genomes	TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr3:195400728A>G	ENST00000445430.1	+	0	1324																											GATTGTGCCCAGCCTGTACGC	0.587000													4	15					0	0	1	0	0
LINC00842	0	broad.mit.edu	37	10	47133727	47133727	+	RNA	SNP	A	A	G			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr10:47133727A>G	ENST00000422732.2	-	0	435					NR_033957.1																						TGGCTGGATGAAGCACTAGCC	0.458000													4	97					0	0	1	0	0
SDHAP1	0	broad.mit.edu	37	3	195713385	195713386	+	RNA	INS	-	-	T			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr3:195713385_195713386insT	ENST00000427841.1	-	0	176					NR_003264.2																						AAAGCATGAACTTACGGAATCT	0.401													3	6	---	---	---	---					
RP5-905H7.3	0	broad.mit.edu	37	7	62693664	62693664	+	RNA	DEL	T	T	-			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr7:62693664delT	ENST00000451381.1	-	0	181																											AGCGATCACCTGAAGGCCACG	0.647													2	4	---	---	---	---					
MIR3648	0	broad.mit.edu	37	21	9825852	9825853	+	RNA	INS	-	-	A			TCGA-J8-A3O2-01A-11D-A23M-08	TCGA-J8-A3O2-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ade6333-73db-4993-83a1-00da914ab0c5	899b05a1-7e18-4e92-8cb0-94a6c8efcd64	g.chr21:9825852_9825853insA	ENST00000581792.1	+	0	21_22					NR_037421.1																						gcggcggtggtggggggagccg	0.837													2	4	---	---	---	---					
