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2016_01_28 Data Snapshot
Table 1. Get Full Table
| Barcode | UUID | Date | Type | Category | Notes |
|---|---|---|---|---|---|
| TCGA-2H-A9GG-01A-11D-A37B-01 | 274a78c3-a699-47be-9f7c-d9ab1a1497af | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3M-AB46-01A-11R-A414-31 | ffa0dfbd-83fa-4e47-b448-a7d922ca4e4a | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-4184-11A-01D-1130-01 | f3eb81ae-4fc0-40e1-ab56-51086da7bb49 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-4194-11A-01D-1130-01 | 7be2642e-010b-4003-a152-b8e4bcd78ed4 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-6453-11A-01D-1799-01 | 9046acce-0767-48c7-b094-ee0a3aea31b9 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-7704-01A-11R-2055-13 | 3796ed18-1911-4d81-8d69-40bba4542703 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-7704-01A-11R-2055-13 | 3796ed18-1911-4d81-8d69-40bba4542703 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8077-10A-01D-2338-01 | 9d9155d0-d3d2-4c48-afbb-bed3c1430946 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8289-10A-01D-2338-01 | 845595dd-cf82-4598-b845-c8cb79a459b0 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8295-01A-11R-2343-13 | 9c2721cf-ca2e-4a60-91c1-1f45cb49bf91 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8295-01A-11R-2343-13 | 9c2721cf-ca2e-4a60-91c1-1f45cb49bf91 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8295-10A-01D-2338-01 | dde98c27-0d5c-4d4b-aab0-f8ff439b2798 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8296-01A-11R-2343-13 | 0d1267c5-ad37-4942-923f-f38c2b0d3127 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8296-01A-11R-2343-13 | 0d1267c5-ad37-4942-923f-f38c2b0d3127 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8296-10A-01D-2338-01 | 7a1e551b-0a3b-4c05-8ba7-68264e2ff0f9 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8297-10A-01D-2338-01 | 82dddf9d-e8b5-4b2a-9b4a-e2b846047fe9 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8366-10A-01D-2339-01 | 266bf4bf-f43b-40d3-8ec4-2f054a254299 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8485-10A-01D-2390-01 | 5233d33c-af0a-432e-9545-174ff420a1a6 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8487-10A-01D-2390-01 | e69f5d60-6d72-4a26-9fe0-19ca09d7a174 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8676-01A-11R-2402-13 | f4b00f16-43de-4703-8d7c-4d7e9fca0920 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8676-01A-11R-2402-13 | f4b00f16-43de-4703-8d7c-4d7e9fca0920 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8677-10A-01D-2390-01 | f9d14691-cc84-40e3-bd2d-671e4a16e357 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8679-10A-01D-2390-01 | df3ef7d8-c2d2-4904-bf41-86892e56ec09 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8687-10A-01D-2390-01 | 24b4da1f-bd81-431a-9a67-9c3d9d3dd92d | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8690-01A-11R-2402-13 | f8af1ec3-7b69-4fa1-a0f1-5b61ea471b2e | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8690-01A-11R-2402-13 | f8af1ec3-7b69-4fa1-a0f1-5b61ea471b2e | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8690-10A-01D-2390-01 | f376c284-00b1-44b3-8f21-11af11ee9b02 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-A44U-01A-11R-A36D-31 | 5d1ed8da-88b6-4a5a-9144-76156df0e255 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-A4QL-01A-31R-A251-31 | b52a9ebf-2c18-41da-9518-b874d0e4432c | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-A4QL-01A-31R-A251-31 | b52a9ebf-2c18-41da-9518-b874d0e4432c | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-A4QM-01A-12R-A251-31 | 762812df-03a7-4e9b-aefc-26cf355c87de | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-A4QM-01A-12R-A251-31 | 762812df-03a7-4e9b-aefc-26cf355c87de | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-CD-5799-10A-01D-1599-01 | ca044457-f735-4a04-95d1-0b1883352a0e | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-5813-01A-11D-1599-01 | e29cd557-ea94-4a15-b02e-f32e1c2e78cc | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-8525-01A-11R-2343-13 | 21db6663-def9-49c6-9184-4479aad5d6f1 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-CD-8525-01A-11R-2343-13 | 21db6663-def9-49c6-9184-4479aad5d6f1 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-CD-8527-01A-11R-2343-13 | 0f16f1f6-a243-451a-a915-1db1f5ceae02 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-CD-8527-01A-11R-2343-13 | 0f16f1f6-a243-451a-a915-1db1f5ceae02 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-CD-8533-10A-01D-2339-01 | a589164d-6b53-4dca-93d9-6e5e54a607a6 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-8534-10A-01D-2339-01 | 645376d8-8ccd-449e-bbe2-f0fbc3512775 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-A4MI-10A-01D-A255-01 | 300def07-9244-4a90-84d2-143a7c55d9e1 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D7-8576-10A-01D-2339-01 | 36202c0f-6b0c-4f38-a5a5-bad580ea76f6 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D7-A4Z0-10A-01D-A255-01 | d2447188-c089-46eb-954c-3d8b1cc0546a | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EQ-8122-11A-01D-2338-01 | 7a2bfc62-f324-40c0-9929-6556e979e2a1 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-F1-A448-10A-01D-A24E-01 | 361c91e2-21cf-49b4-aa05-416db1fdf83b | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FP-A4BE-01A-12D-A24C-01 | 24e20c8a-d4c6-4c8a-91e7-b3b98cbab616 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HJ-7597-01A-21R-2203-13 | 21403bdb-d56b-4b59-af62-fd97528b0051 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-HJ-7597-01A-21R-2203-13 | 21403bdb-d56b-4b59-af62-fd97528b0051 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-HU-8243-01A-11R-2343-13 | ace3edd6-14a9-42cc-84f3-6127237f2913 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-HU-8243-01A-11R-2343-13 | ace3edd6-14a9-42cc-84f3-6127237f2913 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-HU-8243-11A-01D-2338-01 | 6e5789d7-4988-457a-86eb-e618c7ab06eb | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-8602-10A-01D-2390-01 | f2746914-a04d-4cf3-92e9-27a646687686 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4G3-10A-01D-A24E-01 | 64eb5ba7-caee-41bb-ba60-3bff0e16885d | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4GD-01A-11R-A36D-31 | beb0290c-4c9a-4092-9dc3-cbff2f549b18 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-HU-A4GD-10A-01D-A255-01 | dd84bb47-9510-4fd5-94e8-3c040b94e1d1 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4GN-10A-01D-A255-01 | dbd34591-cd21-4238-b2ee-1606eb794565 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4H3-10A-01D-A255-01 | 06855da0-4d3c-4ad3-aaf8-1090ddf83894 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IG-A3YC-10A-01D-A246-01 | d7b6d3c1-ed72-4c93-94ac-682da92b1742 | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IG-A4QS-01A-11R-A260-31 | 8f13389e-3d3b-423f-8a78-0eb9c2373d06 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IG-A4QT-01A-21R-A260-31 | 47670c44-e944-4cbf-b9e6-e1e189666c44 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IG-A5B8-01A-11R-A28J-31 | e336a116-9848-4632-b3b2-2e600f06a7c4 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IG-A6QS-01A-12R-A336-31 | d4dc886f-538b-436c-9c8a-3c2728e9ef3f | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-8462-10A-01D-2339-01 | f5c8f819-75a3-4b64-b056-30c7c4a34afb | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IN-A6RJ-01A-21R-A33Y-31 | 2211f388-87e7-478f-a4e5-e6237b152b82 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A6RN-01A-12R-A33Y-31 | f6589f0a-4b2c-4931-8915-9d71ce834bb3 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A7NR-01A-11R-A354-31 | f34fb02c-fe1d-4f3d-a57c-4413dd6b524c | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A7NT-01A-21R-A354-31 | 48105f07-87e2-4d36-9f1e-9905d041d1be | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A7NU-01A-22R-A354-31 | d52b9b70-e7ee-4474-857a-eb40c10d1746 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-KB-A93G-01A-11R-A39F-13 | 912d64d6-406b-431f-9141-0504ad9cba65 | 06/18/2015 | STAD | Item flagged DNU | Sample identity uncertain |
| TCGA-KB-A93H-01A-11R-A39E-31 | 2b1e486f-03f8-4c35-8897-034faefbd086 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-KB-A93H-01A-11R-A39F-13 | 37aa99a2-c867-4409-bf14-5bc35f61cce1 | 06/18/2015 | STAD | Item flagged DNU | Sample identity uncertain |
| TCGA-L5-A43C-11A-11R-A24K-31 | cdcfe8e4-527c-4c6a-8f3a-6679a0441bdb | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-L5-A43M-11A-11D-A246-01 | 93ba64ea-ad11-4c56-aecb-33fe4c454997 | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-L5-A4OJ-11A-12R-A260-31 | be430dee-ad40-4e96-883f-20eaadfa7e9e | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-L5-A4OR-11A-11R-A260-31 | 27645d9b-50ee-429f-8cd1-d6ba02dae646 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-L5-A4OU-01A-11R-A28J-31 | 8e15f178-5503-40ed-9594-33c5a04d2f26 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A49Y-01A-11R-A260-31 | 66dde567-906c-4da0-9d52-1063db4122ec | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A7HX-10A-01D-A33G-01 | ab20c3c0-9883-428b-8451-87e2e27eb800 | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-LN-A8I0-01A-11R-A36D-31 | 20de8b59-fe73-4e57-97c1-b951896b0c29 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A8I1-01A-11R-A36D-31 | a7822cf2-fedc-4f01-a628-c67d8b7d0e85 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A9FO-01A-11R-A38D-31 | 027af223-8a23-46c0-a4b7-687cdfacd606 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-R6-A6DN-01B-11R-A31P-31 | 4091639e-e22e-4731-8d2f-634f46472ae6 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-R6-A6L6-01B-11R-A336-31 | b72ceca3-60d5-4e2f-b5f4-a021eef6d240 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-RD-A7BS-01A-11R-A32D-31 | 3268d287-7b2f-4a81-8399-10a77e4367d7 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-RD-A7C1-01A-11R-A32D-31 | dce8a7c9-5d7d-454d-aa9a-949ae0754b34 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-RD-A8N5-10A-01D-A361-01 | 4c9ac512-5ad1-4795-804e-f1639a28944e | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-RD-A8NB-10A-01D-A399-01 | a94f40b2-3d43-428b-b3dd-364c9a43bff0 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-SW-A7EB-01A-11R-A354-31 | 459fb55c-3922-4adf-97fb-26ccf298bc45 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-V5-A7RE-11A-11R-A354-31 | 1f0a6ab7-ec79-4f8e-82ca-8d4b91613b6b | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-VQ-A8DV-01A-12R-A36D-31 | ad25f0c1-833a-48f5-8835-be6a288381aa | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-VQ-A8PH-01A-12R-A414-31 | d841b3a0-831e-46bf-bab7-529b23f1e4f0 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-VR-A8EZ-01A-11R-A36D-31 | 72c0caa7-6424-44a6-87f3-8dbd9000ed85 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-ZQ-A9CR-01A-11R-A39E-31 | 4b0753d0-c301-4fcf-a08f-33919d3a33bc | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |