Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold C3L-00081 C3L-00415 C3L-00445 C3L-00568 C3L-00603 C3L-00904 C3L-00923 C3L-00927 C3L-00965 C3L-00993 C3L-01000 C3L-01285 C3L-01606 C3L-01663 C3L-01838 C3L-01884 C3L-02127 C3L-02130 C3L-02163 C3L-02164 C3L-02168 C3L-02170 C3L-02349 C3L-02358 C3L-02546 C3L-02552 C3L-02619 C3L-02624 C3L-02625 C3L-02627 C3L-02629 C3L-02646 C3L-02648 C3L-02649 C3L-02650 C3L-02660 C3L-02665 C3L-02669 C3L-02891 C3L-02951 C3L-02963 C3L-02964 C3L-02968 C3L-03678 C3L-03961 C3L-03962 C3L-03965 C3L-04013 C3L-04014 C3L-04071 C3L-04391 C3N-00211 C3N-00221 C3N-00247 C3N-00497 C3N-00555 C3N-01017 C3N-01018 C3N-01020 C3N-01025 C3N-01028 C3N-01194 C3N-01411 C3N-01846 C3N-01892 C3N-01893 C3N-02252 C3N-02283 C3N-02284 C3N-02285 C3N-02288 C3N-02289 C3N-02300 C3N-02339 C3N-02374 C3N-02375 C3N-02425 C3N-02426 C3N-02434 C3N-02435 C3N-02494 C3N-02523 C3N-02575 C3N-02675 C3N-03051 C3N-03072 C3N-03076 C3N-03092 C3N-03093 C3N-03204 C3N-03424 C3N-03425 C3N-03441 C3N-03486 C3N-03662 C3N-03848 C3N-03851 C3N-03875 C3N-03877 C3N-03880 C3N-03882 C3N-03886 C3N-04124 C3N-04127 C3N-04162 Amplification Peak 1 1p32.1 chr1:58719280-58731664(probes 19755:19764) chr1:58728866-58731565(probes 19756:19763) chr1:58728866-58740016(probes 19756:19766) 0.15955 0.15955 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 Amplification Peak 2 1q21.2 chr1:119727351-175354241(probes 35986:45427) chr1:150526561-150628606(probes 36365:36403) chr1:119997213-154756431(probes 36107:38177) 0.023511 0.023511 0: t<0.1; 1: 0.10.9 1 0 1 0 0 1 0 0 1 1 1 2 0 1 0 1 1 1 0 0 1 0 2 0 1 0 1 1 1 0 0 1 0 2 0 1 0 1 1 0 0 0 1 0 0 1 1 1 1 1 0 0 2 0 0 0 1 1 0 1 1 0 0 1 1 1 1 2 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 1 0 1 1 1 1 2 2 2 0 1 Amplification Peak 3 2p24.3 chr2:16143430-16148533(probes 68712:68717) chr2:16143629-16148434(probes 68713:68716) chr2:16143629-16158614(probes 68713:68721) 0.0021829 0.02144 0: t<0.1; 1: 0.10.9 1 1 0 0 1 0 0 0 1 2 1 2 0 0 0 2 1 1 0 0 1 1 2 1 1 0 0 1 0 0 0 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 1 0 2 2 1 1 2 1 0 0 1 0 0 1 1 1 1 0 0 1 1 2 1 0 0 1 1 0 0 1 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 Amplification Peak 4 2p24.2 chr2:18294092-18295501(probes 69191:69196) chr2:18294191-18295002(probes 69192:69195) chr2:18294091-18313789(probes 69190:69202) 0.0084235 0.029924 0: t<0.1; 1: 0.10.9 1 1 0 0 1 0 0 0 1 1 1 2 0 0 0 0 1 1 0 0 1 1 2 1 1 0 2 1 0 0 0 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 2 1 1 0 1 0 0 1 0 0 1 1 1 1 0 0 1 1 0 1 2 0 1 1 0 2 1 1 1 0 0 1 0 2 1 1 0 1 0 0 0 1 Amplification Peak 5 2q31.1 chr2:169465230-169468481(probes 105645:105652) chr2:169465529-169468282(probes 105646:105651) chr2:169465529-169473928(probes 105646:105654) 0.00049784 0.00049784 0: t<0.1; 1: 0.10.9 0 2 0 0 0 0 0 0 0 2 1 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 2 0 0 0 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 2 1 0 2 Amplification Peak 6 3q26.33 chr3:181680270-182865155(probes 175518:175780) chr3:182282672-182295071(probes 175635:175639) chr3:129992025-198295559(probes 162289:179834) 2.9855e-37 2.9855e-37 0: t<0.1; 1: 0.10.9 2 1 2 2 1 0 1 1 1 2 1 2 1 1 1 1 2 1 2 0 2 0 2 1 1 1 1 1 1 1 0 2 1 2 1 2 0 2 1 1 1 1 2 2 1 2 2 2 2 1 2 1 2 0 0 2 2 1 1 2 1 1 1 2 2 1 2 1 1 1 2 0 2 1 1 2 0 1 2 1 2 2 2 0 1 2 1 1 0 2 1 1 2 2 2 0 1 2 2 2 2 0 2 1 2 Amplification Peak 7 4p12 chr4:46762045-46763547(probes 191500:191505) chr4:46762144-46763348(probes 191501:191504) chr4:46762044-46773105(probes 191499:191507) 0.0048205 0.0086693 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 2 0 0 0 0 2 0 0 1 0 0 0 0 2 1 0 0 2 0 0 0 0 Amplification Peak 8 4q12 chr4:52389402-57504744(probes 192192:193627) chr4:56024286-56024385(probes 193198:193199) chr4:52904771-56727470(probes 192319:193434) 0.012038 0.047804 0: t<0.1; 1: 0.10.9 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 1 0 1 2 2 0 0 0 Amplification Peak 9 4q13.3 chr4:70620934-70623231(probes 196526:196535) chr4:70621033-70623132(probes 196527:196534) chr4:70619974-70623531(probes 196519:196541) 0.0013518 0.0042701 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 2 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 Amplification Peak 10 5p15.2 chr5:13265365-13266262(probes 226453:226456) chr5:13265464-13266163(probes 226454:226455) chr5:1-50832421(probes 224172:234241) 1.8906e-08 1.8906e-08 0: t<0.1; 1: 0.10.9 2 1 2 1 1 1 1 2 1 2 1 0 0 2 2 1 1 1 2 0 1 1 2 1 1 1 2 2 0 2 0 1 1 2 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 2 2 1 1 1 1 1 0 2 1 1 1 0 2 2 1 1 1 1 1 1 1 2 1 2 1 2 2 2 1 1 1 1 1 1 1 1 0 1 2 1 2 0 1 0 1 0 1 1 1 Amplification Peak 11 5q31.1 chr5:135803396-135808293(probes 254773:254782) chr5:135806395-135808194(probes 254774:254781) chr5:135806395-135817092(probes 254774:254784) 0.010662 0.026873 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 Amplification Peak 12 5q32 chr5:145740576-145741273(probes 257743:257746) chr5:145740775-145740874(probes 257744:257745) chr5:145740775-145742273(probes 257744:257752) 0.00034988 0.0076833 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 Amplification Peak 13 6p21.1 chr6:43963421-43963918(probes 278957:278960) chr6:43963520-43963819(probes 278958:278959) chr6:43963420-43973503(probes 278956:278964) 0.036421 0.038422 0: t<0.1; 1: 0.10.9 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 2 1 1 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 1 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 2 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 2 0 1 2 0 0 0 0 1 Amplification Peak 14 6q12 chr6:67232899-67234938(probes 284654:284659) chr6:67233140-67234639(probes 284655:284658) chr6:67232498-67235238(probes 284649:284663) 0.0063274 0.0064237 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 Amplification Peak 15 7p11.2 chr7:54395184-54397284(probes 323712:323725) chr7:54395383-54397185(probes 323713:323724) chr7:54192915-55722701(probes 323683:324091) 1.9848e-06 1.9848e-06 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 1 0 1 0 2 1 1 0 1 0 0 0 1 2 1 0 1 1 1 0 0 0 1 0 1 0 0 1 0 1 1 0 2 1 1 1 0 1 1 1 1 1 0 1 0 1 0 1 0 0 0 2 1 0 0 1 0 1 0 0 2 0 1 2 1 0 1 1 0 1 1 0 0 2 0 0 1 0 1 1 0 1 1 0 1 0 1 Amplification Peak 16 8p11.23 chr8:38281868-38626020(probes 357501:357667) chr8:38298397-38299996(probes 357514:357519) chr8:36127720-46569330(probes 356768:359368) 2.3035e-20 2.3035e-20 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 0 2 2 2 2 2 0 2 2 0 1 0 0 0 0 1 2 0 0 2 1 2 0 0 1 0 0 1 2 1 0 2 1 2 2 2 2 0 0 0 0 0 0 1 1 0 0 0 2 0 1 2 2 0 0 2 2 1 0 0 2 0 2 0 0 0 0 2 1 1 0 0 0 2 2 1 2 1 1 2 0 1 0 1 1 2 1 1 0 0 1 1 2 2 0 1 0 1 Amplification Peak 17 8q24.21 chr8:127166717-127970555(probes 379723:379860) chr8:127353394-127407701(probes 379749:379756) chr8:92688155-145138636(probes 370641:383828) 3.3931e-08 3.3931e-08 0: t<0.1; 1: 0.10.9 1 1 1 1 0 0 0 2 1 1 2 2 1 1 1 1 2 1 1 0 0 0 1 2 1 1 1 1 1 0 0 1 1 0 1 1 1 1 2 1 1 1 1 1 0 1 2 1 0 2 1 1 1 0 1 1 0 1 1 2 0 1 1 1 2 0 1 2 1 0 0 0 0 1 2 1 1 1 1 1 1 1 2 0 2 1 1 1 1 0 1 1 0 1 1 0 0 1 1 1 2 0 0 1 1 Amplification Peak 18 9p13.3 chr9:35563972-36754816(probes 391830:392429) chr9:36143242-36157045(probes 392161:392172) chr9:35184743-37083437(probes 391695:392521) 0.0020435 0.0020435 0: t<0.1; 1: 0.10.9 1 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 2 0 1 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 2 0 0 Amplification Peak 19 9q31.1 chr9:101494795-101497221(probes 402121:402126) chr9:101494894-101495622(probes 402122:402125) chr9:101494894-101497521(probes 402122:402128) 0.14 0.14 0: t<0.1; 1: 0.10.9 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 1 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 1 Amplification Peak 20 10p14 chr10:9380131-9398288(probes 417534:417541) chr10:9387782-9388681(probes 417535:417540) chr10:9387782-9417502(probes 417535:417543) 0.23955 0.23955 0: t<0.1; 1: 0.10.9 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 2 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 1 1 0 1 1 0 1 1 0 0 1 0 0 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 Amplification Peak 21 11q13.3 chr11:69619064-70581423(probes 469421:469958) chr11:70251584-70272725(probes 469747:469755) chr11:68685116-73661633(probes 468934:471170) 4.9498e-14 2.2324e-13 0: t<0.1; 1: 0.10.9 2 0 0 0 0 0 0 0 1 0 1 2 0 1 0 0 2 2 0 0 0 0 1 1 0 0 0 1 0 0 1 1 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 1 1 2 1 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 0 2 2 0 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 1 1 1 0 1 0 0 2 0 0 1 1 0 2 2 2 0 0 2 Amplification Peak 22 11q21 chr11:96562424-96566636(probes 477666:477671) chr11:96562623-96566053(probes 477669:477670) chr11:96561968-96566936(probes 477659:477677) 5.7811e-06 3.7459e-05 0: t<0.1; 1: 0.10.9 1 2 0 0 0 0 0 0 1 2 1 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 1 0 2 0 2 0 0 0 2 0 0 0 0 0 0 0 1 0 1 0 2 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 Amplification Peak 23 12p12.1 chr12:24723955-25355706(probes 494809:494936) chr12:25312558-25340484(probes 494928:494933) chr12:24733193-25648069(probes 494810:495008) 0.0055721 0.0055721 0: t<0.1; 1: 0.10.9 1 0 0 0 0 1 0 0 2 0 1 2 0 0 0 1 2 1 0 0 1 0 0 1 1 0 1 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 1 2 2 1 1 1 1 1 1 0 1 1 2 1 1 0 1 0 1 0 1 0 2 1 0 0 0 0 1 0 1 1 1 1 2 1 0 0 2 1 1 1 0 1 1 0 1 0 1 1 0 0 2 2 1 0 0 1 1 0 Amplification Peak 24 13q21.31 chr13:61961483-61962744(probes 537154:537159) chr13:61961646-61962645(probes 537155:537158) chr13:61961482-61963144(probes 537153:537163) 0.012972 0.078297 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 Amplification Peak 25 13q21.33 chr13:70591229-70593026(probes 538789:538792) chr13:70591328-70592927(probes 538790:538791) chr13:70591128-70593126(probes 538786:538794) 0.012578 0.068432 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 Amplification Peak 26 13q34 chr13:112571276-113915739(probes 548367:548890) chr13:112665645-112666944(probes 548378:548383) chr13:112580551-113917039(probes 548368:548892) 0.013423 0.13631 0: t<0.1; 1: 0.10.9 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 Amplification Peak 27 14q13.1 chr14:34348215-34350419(probes 552908:552911) chr14:34349059-34349158(probes 552909:552910) chr14:34348114-34350825(probes 552905:552917) 0.00013735 0.00013735 0: t<0.1; 1: 0.10.9 1 1 0 0 0 0 0 0 1 2 2 2 0 0 0 2 0 2 0 0 1 0 2 0 1 0 1 0 0 0 0 1 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 1 2 0 0 0 0 0 1 0 2 1 0 0 1 0 Amplification Peak 28 15q25.3 chr15:87882798-87884595(probes 594762:594767) chr15:87882997-87884296(probes 594763:594766) chr15:87882997-87884995(probes 594763:594769) 0.095614 0.095614 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 1 Amplification Peak 29 16p13.13 chr16:10697260-10698657(probes 601770:601775) chr16:10697359-10698558(probes 601771:601774) chr16:10697359-10707616(probes 601771:601777) 0.068432 0.068432 0: t<0.1; 1: 0.10.9 0 1 0 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 2 1 0 1 0 0 0 0 1 Amplification Peak 30 18p11.32 chr18:1629032-1630055(probes 648134:648141) chr18:1629244-1629956(probes 648135:648140) chr18:1629031-1692910(probes 648133:648145) 0.0028522 0.0028522 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 2 0 1 1 2 0 0 0 0 0 1 0 0 0 0 2 2 0 0 0 1 2 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 2 0 1 0 1 1 0 0 1 0 0 0 2 0 1 1 0 2 1 2 2 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 0 0 1 1 0 1 0 0 1 0 2 1 1 0 0 1 0 0 2 Amplification Peak 31 18q12.1 chr18:1-80373285(probes 647962:665046) chr18:27855370-27856479(probes 653299:653304) chr18:27855370-27881687(probes 653299:653307) 0.039532 1 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 1 0 1 0 2 2 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 2 2 1 0 0 0 Amplification Peak 32 18q12.1 chr18:21251780-32624707(probes 651324:654596) chr18:29596550-29596649(probes 653747:653748) chr18:29596550-29596948(probes 653747:653751) 0.063349 0.18171 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 2 2 0 0 0 0 Amplification Peak 33 19q13.11 chr19:33204397-33457669(probes 679066:679157) chr19:33240505-33278114(probes 679089:679093) chr19:28695331-40389934(probes 677812:682863) 0.00039347 0.00039347 0: t<0.1; 1: 0.10.9 1 1 1 1 2 1 0 0 0 1 1 0 0 1 0 0 2 1 0 0 1 0 1 0 1 0 0 2 0 1 0 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 2 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 2 0 1 1 1 1 0 2 0 1 1 0 1 0 1 1 1 0 1 1 0 0 1 1 1 2 2 1 0 0 Amplification Peak 34 20p11.22 chr20:22081801-22084218(probes 697371:697380) chr20:22081900-22084119(probes 697372:697379) chr20:22081900-22094018(probes 697372:697382) 0.0069402 0.0069402 0: t<0.1; 1: 0.10.9 1 1 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 1 1 0 1 0 2 2 1 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 2 2 0 0 1 1 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 2 0 2 0 0 2 1 1 1 1 1 2 1 2 0 0 1 1 1 0 1 0 0 1 0 0 1 0 2 1 0 0 1 0 1 0 1 Amplification Peak 35 20q11.22 chr20:26219450-35801235(probes 698336:700791) chr20:34298515-34368629(probes 699904:699918) chr20:33784109-34825161(probes 699730:700167) 0.029924 0.029924 0: t<0.1; 1: 0.10.9 1 1 1 0 1 0 0 2 2 1 1 0 0 1 0 0 0 1 0 0 2 1 1 2 1 1 1 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 1 1 0 2 0 2 0 1 1 1 1 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 1 0 0 1 0 1 1 1 1 1 1 2 1 0 1 2 1 1 1 0 1 1 0 0 2 0 0 1 1 1 1 0 1 1 2 Amplification Peak 36 21q21.1 chr21:16970634-16973377(probes 710598:710613) chr21:16970833-16971985(probes 710599:710606) chr21:16970633-16977877(probes 710597:710617) 0.012038 0.012038 0: t<0.1; 1: 0.10.9 0 0 1 1 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 2 0 1 0 0 0 0 0 1 Amplification Peak 37 Xp21.3 chrX:26085791-26087188(probes 733697:733700) chrX:26085890-26086889(probes 733698:733699) chrX:26085790-26087488(probes 733696:733706) 0.00034988 0.00034988 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 2 0 0 0 1 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 2 0 1 1 1 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 1 2 0 1 0 0 1 0 0 0 0 2 1 1 0 0 2 0 1 0 0 0 1 0 2 1 1 0 1 0 0 0 0 Amplification Peak 38 Xq22.3 chrX:107905794-109989371(probes 747814:748438) chrX:108230411-108268510(probes 747977:747987) chrX:107909993-109999124(probes 747815:748440) 0.012038 0.012038 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 0 2 2 2 0 0 0 1 1 0 2 0 1 0 0 0 1 0 1 1 0 0 0 1 1 1 1 1 1 0 0 1 0 0 2 2 0 0 1 1 1 1 1 0 1 1 0 1 0 1 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 1 1 2 0 1 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 1 1 1 1 1 0 0 0 1 Amplification Peak 39 Yq11.221 chrY:12512884-12514081(probes 758338:758341) chrY:12512983-12513982(probes 758339:758340) chrY:12512783-12521547(probes 758335:758345) 0.016014 0.016014 0: t<0.1; 1: 0.10.9 1 0 1 0 0 0 0 0 0 2 0 0 1 0 1 2 0 0 0 0 1 2 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 0 0 1 2 0 1 1 1 0 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 1 1 0 0 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 Deletion Peak 1 1p36.12 chr1:1-149927868(probes 1:36122) chr1:21967189-22143445(probes 6796:6820) chr1:22127717-22130044(probes 6809:6810) 0.014792 0.13554 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 1 0 0 1 1 1 1 0 1 0 0 Deletion Peak 2 1p13.2 chr1:100738513-149927868(probes 30739:36122) chr1:112501774-112525773(probes 33773:33786) chr1:95105085-149905703(probes 29236:36109) 8.9432e-05 0.0016661 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 1 1 1 1 0 1 Deletion Peak 3 2q22.1 chr2:140576645-142885137(probes 97730:98432) chr2:140229051-142145084(probes 97539:98284) chr2:140930196-141473782(probes 97861:98062) 0.00033829 0.0052907 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 Deletion Peak 4 2q36.2 chr2:208817895-242193529(probes 116663:126688) chr2:224360640-224421440(probes 121093:121105) chr2:212567744-242193529(probes 117775:126688) 0.0021881 0.082325 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 1 1 0 1 1 1 1 0 1 Deletion Peak 5 3p12.1 chr3:77646286-94014253(probes 147555:151039) chr3:85404557-86087854(probes 149332:149474) chr3:21031377-91564608(probes 131812:150783) 2.8396e-08 2.6433e-08 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 0 0 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 0 1 1 0 1 1 1 0 1 Deletion Peak 6 4p15.33 chr4:14888143-15004496(probes 183989:184019) chr4:14896493-15004496(probes 183993:184019) chr4:14922308-14953129(probes 183999:184011) 1.2505e-05 8.7976e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 1 1 1 1 0 1 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 1 1 1 0 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 0 1 0 1 1 1 1 1 1 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 1 0 1 0 1 1 1 1 0 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 Deletion Peak 7 4p12 chr4:44722496-46735637(probes 191040:191493) chr4:46206421-46390263(probes 191355:191428) chr4:46303837-46305853(probes 191392:191393) 0.028041 0.094639 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 1 0 1 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 1 1 1 0 1 1 1 1 0 1 0 1 1 0 0 1 1 0 1 1 0 1 0 1 0 1 0 1 1 1 1 1 0 1 0 1 1 0 1 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 1 1 1 1 1 1 0 1 0 0 0 0 1 0 1 1 1 1 0 1 1 0 1 Deletion Peak 8 4q22.1 chr4:79299357-190214555(probes 199236:224171) chr4:90127049-91615344(probes 202250:202613) chr4:90308152-91283388(probes 202302:202530) 0.0010675 0.034885 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 1 1 0 1 1 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 1 1 1 0 1 0 0 1 1 0 1 1 0 0 1 0 1 1 1 1 1 0 1 0 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 0 0 1 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 1 0 1 1 1 0 1 Deletion Peak 9 4q34.1 chr4:152099336-190214555(probes 217095:224171) chr4:168092317-186571789(probes 220644:223984) chr4:127223544-190214555(probes 211656:224171) 3.9904e-05 0.034885 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 0 1 1 1 1 1 1 0 1 0 0 1 1 1 0 1 0 1 1 0 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 0 1 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 Deletion Peak 10 5p12 chr5:44815307-50830121(probes 234080:234239) chr5:45243842-50830121(probes 234177:234239) chr5:45359627-45371728(probes 234209:234210) 0.0018617 0.19584 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 11 5q12.1 chr5:58858255-60489091(probes 236272:236612) chr5:58955898-60489091(probes 236286:236612) chr5:51600801-137691983(probes 234425:255251) 1.1918e-05 0.022466 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 0 0 1 1 1 0 1 1 1 0 0 0 0 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 0 1 0 1 0 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 Deletion Peak 12 5q23.1 chr5:44815307-181538259(probes 234080:267641) chr5:118344575-118571194(probes 250121:250163) chr5:51600801-137691983(probes 234425:255251) 0.0015548 0.21061 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 0 1 0 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 0 1 1 1 0 0 1 1 0 1 1 1 0 1 1 0 1 0 1 1 1 0 Deletion Peak 13 5q35.2 chr5:51393999-181538259(probes 234382:267641) chr5:174029368-174125584(probes 265498:265522) chr5:166304341-181538259(probes 263652:267641) 0.0093696 0.20414 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 0 1 0 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 0 0 0 1 1 1 0 0 1 0 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 0 0 1 1 1 0 0 1 1 0 1 0 1 0 1 0 0 1 0 1 1 1 0 Deletion Peak 14 6p12.3 chr6:1-51618701(probes 267642:281148) chr6:49959990-49969989(probes 280686:280693) chr6:49952590-49975288(probes 280676:280704) 0.11429 0.11688 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 1 0 1 Deletion Peak 15 6q22.1 chr6:93419398-117675473(probes 291376:297584) chr6:115632940-115655658(probes 296904:296917) chr6:98102707-117630401(probes 292314:297579) 0.0015334 0.0015524 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 Deletion Peak 16 7q36.3 chr7:108454740-159345973(probes 336305:348963) chr7:158515568-159345973(probes 348950:348963) chr7:156928650-159345973(probes 348516:348963) 0.11816 0.12127 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 Deletion Peak 17 8p23.2 chr8:2129481-6406417(probes 349333:349745) chr8:2922005-5009401(probes 349341:349682) chr8:1-37262051(probes 348964:357064) 3.4264e-15 3.4264e-15 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 1 1 0 1 0 0 0 1 0 1 0 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 0 1 0 1 0 0 1 1 Deletion Peak 18 9p21.3 chr9:21862204-21997447(probes 388290:388330) chr9:21966683-21968982(probes 388319:388320) chr9:1-32092706(probes 383829:390437) 2.5114e-40 2.5114e-40 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 1 0 1 1 0 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 1 1 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 0 0 1 1 Deletion Peak 19 10q23.31 chr10:87838309-88274557(probes 435827:435935) chr10:87862622-87985482(probes 435837:435890) chr10:79866032-108926237(probes 434049:442650) 3.7693e-06 3.5381e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 1 1 1 1 0 0 1 1 1 0 0 1 1 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 0 0 1 1 0 1 0 0 1 0 1 1 1 1 0 0 Deletion Peak 20 11p15.4 chr11:3164691-3227879(probes 450657:450677) chr11:3217781-3218980(probes 450669:450670) chr11:1-5821678(probes 449317:451407) 0.00072302 0.00076036 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 0 1 1 0 1 0 0 1 1 0 1 1 1 1 0 1 0 1 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 0 1 1 0 1 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 Deletion Peak 21 11q22.3 chr11:90223009-135086622(probes 476092:487772) chr11:103890180-104177302(probes 479275:479352) chr11:104036720-104037419(probes 479314:479315) 0.045791 0.043877 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 1 Deletion Peak 22 13q11 chr13:1-18868622(probes 526603:526856) chr13:18047510-18335706(probes 526839:526840) chr13:18031829-18353428(probes 526834:526844) 0.00072302 0.0010275 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 1 0 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 1 0 1 1 1 1 0 1 0 1 0 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 1 0 1 0 1 1 0 1 1 0 0 0 1 0 1 1 0 1 0 1 Deletion Peak 23 13q31.2 chr13:86933577-87623081(probes 542419:542563) chr13:87443843-87670971(probes 542500:542574) chr13:87003353-88420471(probes 542433:542770) 1.4891e-06 1.7697e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 1 1 0 0 1 1 1 1 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 0 1 1 0 1 0 1 0 1 1 1 1 1 1 1 0 1 Deletion Peak 24 14q21.2 chr14:45252277-46503538(probes 555472:555693) chr14:46048116-46503538(probes 555585:555693) chr14:46217811-46234023(probes 555640:555641) 0.086683 0.087151 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 Deletion Peak 25 15q21.3 chr15:53761150-55065845(probes 583550:583901) chr15:54012472-54630054(probes 583590:583818) chr15:54392672-54393271(probes 583705:583706) 0.045639 0.043877 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 Deletion Peak 26 16p13.3 chr16:1-26031661(probes 598150:605061) chr16:980974-997172(probes 598401:598414) chr16:983575-984672(probes 598408:598409) 0.13671 0.13554 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 1 1 0 Deletion Peak 27 16q21 chr16:65167689-66371798(probes 612239:612417) chr16:65279528-65589622(probes 612254:612326) chr16:65362940-65371788(probes 612291:612292) 0.011093 0.028815 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 1 0 1 0 1 0 1 1 1 0 1 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 Deletion Peak 28 16q24.2 chr16:76559187-90338345(probes 616438:618975) chr16:87602769-87605068(probes 618652:618661) chr16:77523679-90338345(probes 616651:618975) 0.018643 0.082325 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 1 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 1 1 1 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 0 1 Deletion Peak 29 17p13.3 chr17:1-16031979(probes 618976:624500) chr17:2049850-2050449(probes 619414:619417) chr17:1-23198134(probes 618976:626591) 2.4855e-08 2.4855e-08 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 0 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 1 1 1 0 0 1 1 0 0 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 0 0 0 1 1 1 1 1 0 1 0 1 0 1 0 1 0 0 Deletion Peak 30 18q12.3 chr18:43277606-44544179(probes 657326:657598) chr18:44322261-44544179(probes 657549:657598) chr18:42765723-80373285(probes 657187:665046) 1.1921e-05 0.00033829 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 Deletion Peak 31 18q23 chr18:50187271-80373285(probes 659199:665046) chr18:78979302-79005501(probes 664916:664937) chr18:42765723-80373285(probes 657187:665046) 0.00023544 0.030983 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 1 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 1 0 1 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 0 0 0 1 1 0 0 0 1 Deletion Peak 32 19p13.2 chr19:1-27791982(probes 665047:677687) chr19:6890743-7116260(probes 669008:669009) chr19:6886143-7117460(probes 669000:669011) 0.063814 0.065499 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 1 1 1 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 Deletion Peak 33 19q13.32 chr19:36202239-58617616(probes 680626:691753) chr19:46819544-46838248(probes 686246:686247) chr19:45046874-53866037(probes 685136:689645) 0.084371 0.087151 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 Deletion Peak 34 20q13.33 chr20:34550134-64444167(probes 700038:709448) chr20:62064723-62065022(probes 708515:708518) chr20:62064823-62065022(probes 708517:708518) 0.24784 0.24509 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 Deletion Peak 35 21p11.2 chr21:6852736-14109327(probes 709635:709895) chr21:6912379-8238832(probes 709641:709697) chr21:6922319-7282600(probes 709642:709643) 0.15368 0.15589 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 1 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 1 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 1 1 1 0 0 0 1 1 0 0 1 1 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 0 1 1 0 1 1 1 0 0 1 1 0 1 1 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 1 0 0 1 1 0 0 1 Deletion Peak 36 21q22.3 chr21:37267534-46709983(probes 715592:718745) chr21:44989297-45005096(probes 718304:718308) chr21:44989297-45074140(probes 718304:718323) 0.063814 0.065499 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 0 1 0 1 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 1 0 1 0 1 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 1 1 1 1 1 1 0 1 0 0 1 0 0 1 1 1 1 0 0 1 1 0 1 1 1 1 0 1 0 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 Deletion Peak 37 22q13.32 chr22:48270279-48781801(probes 729816:729945) chr22:48489173-48757351(probes 729855:729936) chr22:48581916-48585815(probes 729896:729897) 0.11555 0.11688 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 Deletion Peak 38 Xp21.1 chrX:1-53054082(probes 729990:738962) chrX:30859229-34013927(probes 734521:735017) chrX:32150416-32176662(probes 734770:734771) 0.21263 0.21061 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 Deletion Peak 39 Xq22.3 chrX:108149812-108773392(probes 747916:748138) chrX:108438184-108773392(probes 748053:748138) chrX:108576163-108577662(probes 748096:748097) 0.0085253 0.0088562 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 40 Yq11.23 chrY:13479852-57227415(probes 758610:760603) chrY:25712762-57227415(probes 760456:760603) chrY:11486563-57227415(probes 758161:760603) 0.00028559 0.00028284 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 0 1 0 1 0 0 1 0 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 0 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 1 0 1 0 1 Amplification Peak 1 - CN values 1p32.1 chr1:58719280-58731664(probes 19755:19764) chr1:58728866-58731565(probes 19756:19763) chr1:58728866-58740016(probes 19756:19766) 0.15955 0.15955 Actual Copy Change Given -0.38904 -0.0059722 -0.26883 0.0040423 0.015497 0.004153 0.012849 0.0097529 -0.21189 -0.13088 -0.059756 -0.030944 0.0057471 -0.011575 0 -1.2929 -0.17087 0 -0.43911 -0.014573 -0.27713 0.028883 3.6569 -0.23107 -0.064288 -0.012006 -0.00037203 0.26617 -0.26372 0.010557 -0.025444 -0.18416 0.0068245 -0.31332 0.044043 0.17427 -0.29694 -0.34855 0 0.028226 -0.052474 0.0070387 -0.25727 0.011116 -0.025829 -0.0052427 -0.3168 0.53244 -0.30751 -0.11169 -0.075267 -0.042416 -0.48079 -0.016641 0.00092352 0.21303 -0.2364 -0.17326 -0.21147 -0.35678 -0.2363 0 -0.69303 -0.081459 -0.0090016 -0.20697 -0.35858 0.023801 3.6569 0.029119 -0.1671 0.023277 0.0041392 -0.018101 -0.21805 -0.42203 -0.00064936 -0.16815 -0.40002 0.040555 -0.0019857 0.02062 0.074189 3.4516 0.0056526 -0.41118 -0.060804 0 -0.023301 0.033097 -0.039862 -0.025962 0.04339 -0.34701 -0.32203 0.19826 3.6569 -0.15653 -0.46469 -0.10134 -0.49249 -0.74543 -0.17398 -0.035922 0.012351 Amplification Peak 2 - CN values 1q21.2 chr1:119727351-175354241(probes 35986:45427) chr1:150526561-150628606(probes 36365:36403) chr1:119997213-154756431(probes 36107:38177) 0.023511 0.023511 Actual Copy Change Given 0.22754 -0.0059722 0.10898 0.017321 0.011194 0.28168 0.012849 0.010023 0.47715 0.1753 0.11654 1.4373 0.0091008 0.30233 0 0.10939 0.85323 0.14324 0.046041 0.0095253 0.2818 0.028883 0.98142 -0.30163 0.15292 -0.012006 0.23705 0.26342 0.28886 0.01487 0.0067723 0.26958 0.0068245 1.184 0.044043 0.34694 0.086629 0.40959 0.37191 0.028515 0.061918 0.0070387 0.28157 0.009908 -0.025829 0.54235 0.41576 0.53244 0.38123 0.17556 0.08736 0 1.3964 0.0040927 0.024985 -0.00080588 0.2953 0.69446 0.09859 0.60416 0.15527 -0.0066272 0.039881 0.6739 0.25252 0.30245 0.47309 3.6569 0.71311 0.0039923 0.60926 0.023277 0.0041392 0.0051187 -0.10347 0.40052 0.056272 0.039887 0.19614 -0.021883 0.096448 0.02062 0.098051 0.14535 -0.18983 0.56576 0.019886 0.24346 -0.021725 0.057789 -0.039862 0.057667 0.04339 0.36212 0.24332 0 0.62404 0.45378 0.37419 0.73501 0.94864 2.8323 2.1671 -0.035922 0.29252 Amplification Peak 3 - CN values 2p24.3 chr2:16143430-16148533(probes 68712:68717) chr2:16143629-16148434(probes 68713:68716) chr2:16143629-16158614(probes 68713:68721) 0.0021829 0.02144 Actual Copy Change Given 0.50363 0.13923 0.091568 0.0096115 0.53021 0.041778 0.025379 -1.2929 0.47113 3.6569 0.2656 1.4521 0.009867 0.078906 0.014489 3.6569 0.44119 0.16317 0.036116 0.0059175 0.49975 0.18957 1.2502 0.27789 0.14878 0.018638 -0.029482 0.20097 0.014401 -0.050793 0 0.1796 0.19241 -1.1373 -0.0020833 0.070025 0.17207 0.36434 0.20926 0.24466 0.045853 0 0.27224 0.09261 0.012416 -0.017401 0.031966 -0.0025597 -0.13543 0.14706 0.70485 0.21344 0.76986 -0.0035565 0.060995 0.20594 0.44844 0.29423 0.042925 0.0030523 0.22219 0.027055 3.6569 0.97155 0.32954 0.28082 3.6569 0.5786 -1.2929 0.0081428 0.49064 0.069682 0.0051254 0.13629 0.47078 0.28977 0.45326 0 -0.71787 0.34409 0.19351 1.8915 0.41672 -1.2929 -0.0029389 0.36099 0.15522 -0.035706 -1.2929 0.13174 0.11821 0.19048 0.01517 -0.0015669 0.25481 0.00045197 -1.2929 0.20532 0.43009 0.071029 0.5221 0.013224 0.089348 0.067749 0.24778 Amplification Peak 4 - CN values 2p24.2 chr2:18294092-18295501(probes 69191:69196) chr2:18294191-18295002(probes 69192:69195) chr2:18294091-18313789(probes 69190:69202) 0.0084235 0.029924 Actual Copy Change Given 0.50363 0.13923 0.091568 0.0096115 0.53021 0.041778 0.025379 0.011039 0.47113 0.31296 0.2656 1.4521 0.009867 0.078906 0.014489 -1.2929 0.44119 0.16317 0.036116 0.0059175 0.49975 0.18957 3.6569 0.27789 0.14878 0.018638 1.0049 0.20097 0.014401 0.060513 0 0.1796 0.19241 0.051781 -0.0020833 0.070025 0.17207 0.36434 0.20926 0.24466 0.045853 0 0.27224 0.09261 0.012416 -0.017401 0.031966 -0.0025597 0.22106 0.14706 0.70485 0.21344 0.76986 -0.0035565 0.060995 0.20594 0.44844 0.29423 0.042925 0.0030523 0.22219 0.027055 0.045183 0.97155 0.32954 0.28082 -0.99714 0.5786 0.050943 0.0081428 0.49064 0.069682 0.0051254 0.11647 0.47078 0.28977 0.45326 0 -0.73389 0.34409 0.19351 0.028381 0.41672 3.4249 -0.0029389 0.36099 0.15522 -0.035706 3.5276 0.13174 0.11821 0.19048 0.01517 -0.0015669 0.25481 0.00045197 3.6569 0.20532 0.43009 0.071029 0.5221 0.013224 0.089348 0.067749 0.24778 Amplification Peak 5 - CN values 2q31.1 chr2:169465230-169468481(probes 105645:105652) chr2:169465529-169468282(probes 105646:105651) chr2:169465529-169473928(probes 105646:105654) 0.00049784 0.00049784 Actual Copy Change Given -0.041442 3.6569 -0.27832 0.013814 0.014992 0.041778 0 -1.2929 -0.20952 3.6569 0.31731 1.3811 0.0020592 0.034317 0.014489 3.6569 0.40462 -0.025683 0.16751 0.0071489 -0.01311 0.01666 -1.2929 -0.024849 0.14878 0.018638 -0.0059688 0.20097 0.015712 0.050295 -0.0037506 0.024099 0.003745 -0.84383 -0.0020833 0.25181 0.27438 0.024841 -0.01995 0 0.0035051 0 0.0030411 -0.29447 0.066176 0.54394 0.055616 0.0011293 0.20004 -0.021103 0.20988 0.21344 0.034838 -0.0035565 0.043185 -0.0067415 0.26538 0.37563 -0.11895 0.00093188 0.17113 -0.00639 0.057995 0.15723 0.0061221 -0.21276 3.6569 0.068327 0.07632 -0.0026101 0.49064 0.069682 0.0051254 0.151 0.22037 -0.10991 -0.39771 0 3.6569 -1.2929 0 0.036539 -0.0092764 -1.2929 -0.0063509 0.35104 0.3741 0.11143 -1.2929 0.025081 0.11852 0.66294 0.12496 0.01155 0.32207 0.00045197 -1.2929 0.20295 -0.018982 0.054862 0 2.3114 0.12492 0.0082026 1.1051 Amplification Peak 6 - CN values 3q26.33 chr3:181680270-182865155(probes 175518:175780) chr3:182282672-182295071(probes 175635:175639) chr3:129992025-198295559(probes 162289:179834) 2.9855e-37 2.9855e-37 Actual Copy Change Given 1.9798 0.76706 1.6071 1.0869 0.7883 0.023753 0.17187 0.62149 0.55781 1.4919 0.84696 3.6569 0.78397 0.81959 0.37195 0.24765 3.6569 0.30829 3.0511 0.011957 1.2457 -0.018275 1.9857 0.2987 0.62123 0.12604 0.7457 0.72742 0.69495 0.60349 -0.0015941 1.3508 0.73522 3.0202 0.47145 0.98397 0.0073006 1.2294 0.39257 0.17595 0.53138 0.17278 3.6569 1.3776 0.11558 1.8559 2.7511 1.4886 0.9937 0.55886 2.7384 0.43134 3.6104 0 0.019746 0.97506 1.5333 0.88082 0.22692 1.4406 0.82069 0.26704 0.10274 2.8503 2.113 0.60243 1.76 0.3693 0.76261 0.43783 3.6569 0.086431 1.4011 0.36379 0.41203 2.2155 0.049717 0.1686 3.6569 0.5238 3.3889 3.6569 2.0832 0.079666 0.89802 1.5088 0.46752 0.51389 -0.0072876 1.3819 0.23684 0.51181 3.2212 2.1415 1.2615 -0.012516 0.4357 2.0362 3.6569 0.92074 3.6569 -0.24119 2.8346 0.1681 1.1674 Amplification Peak 7 - CN values 4p12 chr4:46762045-46763547(probes 191500:191505) chr4:46762144-46763348(probes 191501:191504) chr4:46762044-46773105(probes 191499:191507) 0.0048205 0.0086693 Actual Copy Change Given -0.090932 0.15943 -0.256 -0.060052 0.00011338 0.017647 -0.13908 0.0095361 -0.54865 -0.16492 -0.30049 -0.14102 -0.0009124 -0.1358 -0.036721 -0.073932 -0.47707 1.342 0.10955 -0.017582 -0.278 0.00023455 3.6569 0.0028339 -0.049412 -0.016963 -0.027232 -1.2367 -0.26688 -0.18157 0.038173 -0.36022 -0.14293 -0.39406 -0.15375 -0.077566 -0.26388 -0.023206 -0.13819 -0.14352 0.091929 -0.014133 -0.26338 -0.18087 -0.052512 -0.53026 -0.31746 -0.038779 -0.36444 -0.089091 -0.11208 0.17592 -0.65078 0.00023559 -0.11943 -0.28432 -0.22926 -0.1586 -0.11876 -0.034803 -0.1816 -0.024795 -0.69346 -0.2929 -0.041266 -0.20819 -0.35968 0.022185 -0.6155 -0.34547 -0.16525 -0.081477 -0.0034273 -0.0010268 -0.24674 -0.46543 -0.030081 0.04515 -0.05534 1.8797 0.17449 -0.039137 -0.70487 2.5453 -0.29636 -0.8286 -0.27215 -0.10773 3.6569 -0.63622 -0.0055173 0.1923 -0.071825 0.0071941 -0.39278 0.0018875 3.6569 0.24095 -0.43252 -0.21969 3.3807 -0.7873 -0.19108 -0.066444 -0.23324 Amplification Peak 8 - CN values 4q12 chr4:52389402-57504744(probes 192192:193627) chr4:56024286-56024385(probes 193198:193199) chr4:52904771-56727470(probes 192319:193434) 0.012038 0.047804 Actual Copy Change Given 0.32861 0.15943 -0.256 -0.060052 0.00011338 0.017647 -0.13908 0.52046 0.099555 -0.029641 -0.30049 -0.14102 -0.0009124 -0.1358 -0.036721 -0.073932 -0.47707 0.7253 0.053851 -0.017582 0.81855 0.00023455 -0.27329 0.0025129 -0.049412 -0.016963 0.21259 -0.75943 -0.26688 -0.52127 0.038173 0.87804 -0.14293 0 -0.15375 -0.077566 -0.34294 -0.39259 -0.17475 -0.12785 0.28987 -0.014133 -0.26338 -0.0069974 -0.052512 -0.53026 -0.31746 -0.038779 -0.19254 -0.089091 0.031084 -0.00063631 -0.43258 0.00023559 -0.11943 -0.043148 -0.22926 -0.1586 -0.11876 0.89041 -0.1816 -0.024795 -0.69346 3.6569 -0.041266 -0.0042643 -0.35968 0.022185 0.041843 -0.0050018 -0.16525 -0.081477 -0.0034273 0.21427 -0.24674 -0.46543 -0.030081 0.04515 -0.05534 0.22004 0.17449 -0.031761 -0.70487 -0.14363 -0.29636 -0.047416 0.84902 0.0282 -0.099732 -0.63622 -0.0055173 -0.25926 -0.071825 0.0071941 -0.30498 0.0018875 3.6569 0.24095 -0.43252 0.11358 3.6569 2.6671 -0.18544 -0.066444 -0.41548 Amplification Peak 9 - CN values 4q13.3 chr4:70620934-70623231(probes 196526:196535) chr4:70621033-70623132(probes 196527:196534) chr4:70619974-70623531(probes 196519:196541) 0.0013518 0.0042701 Actual Copy Change Given -0.053506 0.15943 -0.26751 0 0.00011338 0.017647 -0.13908 1.7163 0.099555 3.6569 -0.2805 -0.028154 -0.0009124 -0.1358 -0.036721 0.028082 -0.47707 -0.14444 -0.42741 -0.017582 0.81714 0.00023455 3.6569 0.0025129 -0.049412 -0.016963 0.24775 -0.75943 -0.26688 -0.49684 0.038173 -0.0078172 -0.14293 -0.005516 -0.15375 -0.077566 -0.28481 0.0013426 -0.17475 -0.12785 -0.12076 -0.014133 -0.24918 -0.0069974 0.10153 -0.523 -0.30077 -0.017793 -0.19254 -0.089091 0.031084 -0.00063631 -0.4306 0.00023559 -0.11943 -0.043148 -0.22926 -0.1586 -0.11876 0.17826 -0.16958 -0.08855 -0.68041 -0.064598 -0.041266 -0.0042643 -0.27073 -0.54822 3.6569 -0.0050018 -0.16525 -0.12899 -0.385 -1.2929 -0.24674 -0.46543 0.026815 0.04515 3.6569 -1.2929 0.12936 3.6569 -0.68841 -0.15919 -0.28698 -0.43003 -0.32682 0.082132 -1.2929 -0.6258 0.6158 -0.24656 -0.071825 0.0071941 -0.33008 0.0018875 -1.2929 0.24095 -0.42187 0.11358 -0.42586 -0.66637 -0.18544 -0.066444 0.31755 Amplification Peak 10 - CN values 5p15.2 chr5:13265365-13266262(probes 226453:226456) chr5:13265464-13266163(probes 226454:226455) chr5:1-50832421(probes 224172:234241) 1.8906e-08 1.8906e-08 Actual Copy Change Given 0.9759 0.60801 1.0205 0.28765 0.13389 0.19305 0.3793 1.7135 0.40989 1.2061 0.79311 -0.16332 -0.014919 1.884 0.93411 0.54859 0.79115 0.54447 1.1909 0 0.61612 0.2615 3.6569 0.87904 0.49543 0.15408 0.90709 1.5787 0.021201 0.94712 0.058088 0.12743 0.53757 2.8243 -0.0033052 0.18358 0.8044 -0.0018717 0.61283 0.3791 0.10549 0.46738 0.23062 0.12464 -0.0023742 0.57185 0.2009 0.45988 0.63847 0.32364 0.8292 0.30985 -0.088564 0.07313 0.30581 1.313 3.6569 0.21499 0.11211 0.6109 0.74508 0.38809 -0.027897 2.3937 0.41731 0.29055 0.42316 -0.25859 3.6569 1.1083 0.42149 0.29532 0.36587 0.609 0.46768 0.28695 0.42742 1.7166 0.33129 2.1312 0.18669 2.8945 2.2289 3.6569 0.81243 0.25971 0.13805 0.70769 0.2939 0.64485 0.54326 0.54835 0.083695 0.3388 1.1622 0.19983 3.6569 -0.1661 0.18288 0.096163 0.2432 -0.23681 0.63156 0.10092 0.60855 Amplification Peak 11 - CN values 5q31.1 chr5:135803396-135808293(probes 254773:254782) chr5:135806395-135808194(probes 254774:254781) chr5:135806395-135817092(probes 254774:254784) 0.010662 0.026873 Actual Copy Change Given -0.43991 -0.15223 -0.30247 -0.21998 -0.50693 -0.31966 -0.13391 -0.5604 -0.20969 0.16661 -0.2822 0.017987 -0.25369 -0.28707 -0.16496 -1.2929 0.8796 -0.14619 -0.448 0 -0.28615 -0.052668 3.6569 -0.61324 -0.11705 -0.032197 -0.012393 -0.7625 0.027081 -0.50893 0.058088 0.021129 -0.19279 -0.33389 -0.13756 -0.08824 -0.29259 -0.0018717 -0.18478 -0.13404 -0.11369 -0.26792 -0.25898 -0.26206 -0.0023742 -0.0020382 -0.30312 -0.53627 -0.47564 -0.11349 -0.094312 -0.001953 -0.46725 0.07313 -0.1192 -0.005972 0.50943 -0.16742 -0.18609 -0.35291 -0.22994 -0.098307 -0.68765 -0.29997 -0.17135 0.0060054 -1.1904 -0.5602 3.6569 -0.31182 -0.4368 -0.13783 -0.39091 0.013395 0 -0.47188 -0.44665 0.023143 -0.39195 -0.37964 -0.2117 -0.50936 -0.019708 3.6569 -0.28687 -0.41898 -0.35545 0.020213 3.6569 -0.62209 -0.11651 0.016606 -0.14587 -0.34462 -0.30332 0.017445 3.6569 -0.13257 0 -0.2038 0.037079 -0.73312 -0.1705 -0.1404 -0.046243 Amplification Peak 12 - CN values 5q32 chr5:145740576-145741273(probes 257743:257746) chr5:145740775-145740874(probes 257744:257745) chr5:145740775-145742273(probes 257744:257752) 0.00034988 0.0076833 Actual Copy Change Given -0.43991 -0.15223 -0.30247 -0.21998 -0.50693 -0.31966 -0.13391 -0.5604 -0.1987 3.6569 -0.2822 -0.048878 -0.25369 -0.28707 -0.16496 3.6569 0.1301 -0.14619 -0.448 0 -0.28615 -0.052668 3.6569 -0.61324 -0.11705 -0.032197 -0.012393 -0.7625 0.027081 -0.51307 0.058088 0.021129 -0.19279 -0.34735 -0.13756 -0.08824 -0.29259 -0.0018717 -0.18817 -0.13404 -0.11369 -0.26792 -0.25898 -0.26206 -0.0023742 -0.010279 0.0088546 -0.55974 -0.47564 -0.11349 -0.094312 -0.001953 -0.46725 0.07313 -0.1192 -0.005972 -0.25285 -0.16742 -0.18609 -0.35291 3.6569 -0.098307 -0.68765 -0.29997 -0.17135 0.0060054 3.6569 -0.5602 -0.64339 -0.31182 -0.19154 -0.13783 -0.39091 -1.2929 0 -0.47188 -0.44665 0.14217 3.6569 -1.2929 -0.2117 2.0632 -0.019708 0.078325 -0.28687 -0.41898 -0.35545 0.020213 -1.2929 -0.62209 -0.11651 0.016606 -0.14587 -0.0016266 -0.33299 0.017445 -1.2929 0.24537 0 -0.2038 -0.026696 -0.76914 -0.1705 -0.1404 -0.060122 Amplification Peak 13 - CN values 6p21.1 chr6:43963421-43963918(probes 278957:278960) chr6:43963520-43963819(probes 278958:278959) chr6:43963420-43973503(probes 278956:278964) 0.036421 0.038422 Actual Copy Change Given -0.41982 0 -0.30612 -0.17768 0.15997 0.010864 0.013004 0.5888 0.086115 -0.14204 0 0.73008 0.0073159 0.056157 0.051044 0.064175 0.12099 -0.0033785 -0.41277 0.0060475 0.68822 0.012067 3.6569 0.23429 0.10762 -0.016437 0.0061449 0.16866 -0.26684 0.023504 -0.016981 -0.17494 -0.1875 0.77251 0.4112 0.066891 0.012646 -0.0025475 0.22179 -0.13489 0.04544 -0.0030912 0.0077855 0.3451 -0.058261 0.43607 0.72786 0.019061 0.71278 0.069968 0.14367 0.20968 2.2469 -0.010312 0.036768 0.21574 0.41663 0.23379 0.050653 0.004839 0.069121 0.020302 -0.68892 -0.070601 0 -0.20875 0.037979 0.79271 -0.012585 0.0014445 -0.0088556 -0.00073301 0.0063477 0.075526 0.03994 0.043722 2.3945 -0.02112 2.2429 0.14838 0.23031 -0.00032029 -0.67998 0.027384 0.0084463 -0.018767 0.22231 0.027272 0.1179 0.033923 -0.06765 0 0.014371 0.0071559 -0.15929 -0.033023 3.6569 -0.14243 0.13512 1.1584 -0.52045 0.036464 -0.16513 0.016741 0.23282 Amplification Peak 14 - CN values 6q12 chr6:67232899-67234938(probes 284654:284659) chr6:67233140-67234639(probes 284655:284658) chr6:67232498-67235238(probes 284649:284663) 0.0063274 0.0064237 Actual Copy Change Given -0.10071 0 -0.27324 -0.09698 -0.16357 0.010864 0.013004 0.47352 0.041335 -0.35837 0 1.256 0.00069536 -0.11184 0.051044 -1.2929 0.12251 -0.0033785 0.034637 0.0060475 -0.15178 0.012067 3.6569 0.23429 -0.039184 -0.016437 -0.25705 0.18953 0 0.023504 -0.016981 -0.24397 -0.1875 0.64519 0.12616 0.066891 -0.32856 -0.0025475 -0.00084147 -0.083256 0.04544 -0.23695 0.0077855 0.3451 -0.058261 0.43605 0.012172 -0.050742 -0.18752 0.069968 0.14367 -0.2218 -0.020838 -0.010312 0.0967 0.18139 0.076375 -0.1744 0.050653 0.004839 0.14337 0.020302 -0.69858 -0.070601 0 0.00010438 0.037979 0.53474 3.6569 0.0014445 0.011874 -0.043535 0.0063477 3.5661 -0.11359 -0.22017 0.45072 -0.16036 0.35768 0.096792 0.37453 0.012533 -0.41326 3.6569 -0.013414 -0.063987 0.35251 -0.1085 0.23843 0.033923 -0.06765 0 -0.014901 0.0071559 -0.17933 -0.033023 3.6569 -0.14243 -0.10658 0 0.84809 0.020546 -0.0072196 0.016741 -0.10162 Amplification Peak 15 - CN values 7p11.2 chr7:54395184-54397284(probes 323712:323725) chr7:54395383-54397185(probes 323713:323724) chr7:54192915-55722701(probes 323683:324091) 1.9848e-06 1.9848e-06 Actual Copy Change Given 0.33373 0.14931 0.31566 0.074259 -0.0061532 0.010438 0.010093 -1.2929 0.45285 -0.19171 -0.0054315 0.76885 -0.010297 -0.16539 0.056198 3.6569 -0.38558 0.15014 0.46425 0.0087893 0.52206 0.0076558 3.6569 0.20548 0.14431 0.037622 0.23757 -0.27895 0.014703 0.010843 0.13393 3.6569 0.19767 -0.35318 0.11746 0.20277 0.33998 0 0.030004 -0.13467 0.14241 0.01801 0.26623 -0.1488 0.014986 0.34819 -0.33457 0.44281 0.41142 0 2.2211 0.21472 0.46685 0.15616 0.0056028 0.35756 0.33426 0.21522 0.10103 0.62774 -0.16105 0.14513 0.034715 0.43705 0.011058 0.29028 0.070352 0.0063937 -0.085923 3.6569 0.32675 0.067278 0.0039136 0.66699 -0.24188 0.16254 0.018518 0.0048923 3.6569 -0.28478 0.15357 3.6569 0.10274 0.02739 0.28039 0.31905 -0.54246 0.10508 0.34245 -0.62704 0.032156 3.6569 0.094089 0.0021584 0.19678 0.029037 0.45465 0.22414 0.044644 0.16757 0.69515 -0.13168 0.13135 0.055274 0.25816 Amplification Peak 16 - CN values 8p11.23 chr8:38281868-38626020(probes 357501:357667) chr8:38298397-38299996(probes 357514:357519) chr8:36127720-46569330(probes 356768:359368) 2.3035e-20 2.3035e-20 Actual Copy Change Given 0.26657 -0.17839 -0.32866 0.018241 0.0016775 0.010209 -0.018249 0.033684 1.0684 3.6569 3.6569 3.6569 1.7923 -0.27092 1.2714 3.6569 0.063689 0.12272 0.020166 -0.00089124 0.0077104 -0.01022 0.1915 0.91909 -0.059856 -0.081878 1.0557 0.6821 0.95755 -0.53371 0.056978 0.22173 -0.19817 -0.34804 0.14831 1.8326 0.32003 0.019852 3.6569 0.16838 0.93656 3.2912 2.4229 3.6569 0.010759 0.041294 -0.66661 -0.55792 -0.037413 0.094347 0.31021 0.20231 -0.051819 -0.0070954 -0.14852 3.6569 -0.11634 0.10858 2.1877 1.0723 -0.16405 -0.12379 1.7626 1.8689 0.3281 0.043812 -0.40242 3.6569 -0.6352 2.3757 -0.17754 0.037131 -0.40209 -0.19572 1.0506 0.32397 0.47994 -0.12389 -0.3982 0.048623 3.4018 2.5942 0.84487 1.1665 0.27508 0.3251 3.6569 0.039897 0.86713 0.02176 0.21448 0.49073 3.1786 0.33487 0.2217 0.062848 -0.71782 0.64043 0.8564 2.5052 2.6163 -0.7568 0.70051 -0.15069 0.82048 Amplification Peak 17 - CN values 8q24.21 chr8:127166717-127970555(probes 379723:379860) chr8:127353394-127407701(probes 379749:379756) chr8:92688155-145138636(probes 370641:383828) 3.3931e-08 3.3931e-08 Actual Copy Change Given 0.5474 0.40723 0.37937 0.26729 0.0068017 0.010209 -0.018249 3.6569 0.55898 0.57871 1.0799 2.188 0.25943 0.36301 0.46891 0.55952 0.94049 0.12272 0.50765 -0.00089124 0.0077104 -0.01022 0.16105 2.3589 0.44039 0.17002 0.73177 0.23384 0.34937 0.013668 0.056978 0.18002 0.17579 0.011007 0.14831 0.29971 0.31368 0.21326 1.4725 0.12431 0.52976 0.81747 0.52031 0.47071 0.010759 0.52958 3.6569 0.19927 -0.15049 3.6569 0.43412 0.20231 0.22342 -0.0070954 0.41588 0.15216 -0.013097 0.87742 0.47684 1.3548 -0.16405 0.19408 0.41405 0.16527 1.5762 0.043812 0.11048 0.96426 0.76037 0 -0.17754 0.037131 0.010055 0.17291 1.1333 0.3351 0.48622 0.31993 0.28285 0.5725 0.22515 0.25958 1.5314 -0.029834 1.1444 0.7339 0.63377 0.17309 0.11717 0.023194 0.13547 0.21153 0.08517 0.3233 0.21199 0.062848 -0.34438 0.22221 0.74173 0.29641 1.8517 0.076903 0.07982 0.33413 0.25636 Amplification Peak 18 - CN values 9p13.3 chr9:35563972-36754816(probes 391830:392429) chr9:36143242-36157045(probes 392161:392172) chr9:35184743-37083437(probes 391695:392521) 0.0020435 0.0020435 Actual Copy Change Given 0.16552 -0.17559 0.64072 -0.19534 -0.51287 -0.33003 -0.14029 -0.57297 -0.19717 -0.1805 0.49632 0.77106 0.0048758 -0.28886 -0.15448 0.09569 0.59398 -0.14892 0.068773 -0.0027757 0.58141 -0.061606 0.33768 -0.31674 0.12134 -0.0016486 -0.0063328 0.68412 -0.2475 -0.53677 -0.08411 -0.19468 0.93612 -0.36514 -0.1525 -0.077781 -0.30448 -0.39438 -0.11842 0.020038 -0.11247 0.0022784 -0.26366 -0.48415 0.018077 1.0408 0.73219 -0.0046312 0.19649 0.35255 -0.070365 0.55784 -0.36103 -0.020849 0.13226 0.8322 -0.047899 -0.17276 -0.14383 0.15579 3.6569 0.040896 0.040364 0.17845 -0.31318 -0.20349 0.0069361 -0.5592 -0.66459 -0.33194 -0.44463 0.17997 -0.00065753 -0.20366 -0.013185 1.6233 -0.43541 -0.17082 2.303 0.15187 -0.18367 -0.51904 0.87846 1.0119 -0.25511 0.35893 -0.34202 0.20667 0.13267 -0.63147 -0.12364 1.2994 -0.13838 0.0017986 0.38278 -0.075873 -0.26673 -0.15033 -0.44564 -0.27335 -0.48929 -0.7464 3.6569 -0.14857 -0.40934 Amplification Peak 19 - CN values 9q31.1 chr9:101494795-101497221(probes 402121:402126) chr9:101494894-101495622(probes 402122:402125) chr9:101494894-101497521(probes 402122:402128) 0.14 0.14 Actual Copy Change Given 0.17937 -0.15649 0.21959 0.020349 -0.52344 -0.075666 -0.13313 2.4325 -0.19717 -1.1911 -0.28517 -0.053008 -0.2564 -0.28886 -0.16533 -0.46538 0.17521 -0.15569 0.50292 -0.0027757 0.28226 -0.061606 3.6569 -0.32665 -0.069925 -0.0016486 -0.0063328 0.12766 0.10326 0.0065429 -0.08411 -5.061e-05 -0.059501 -0.34898 -0.1525 -0.077781 -0.29117 0.014116 -0.11078 -0.13223 -0.11247 -0.25634 -0.26366 -0.50651 0.018077 -0.0048768 0.36847 -0.0046312 -0.16229 0.0032819 -0.070365 -0.22271 0.19823 -0.020849 -0.016172 -0.25868 0.029239 -0.17244 0 0.024946 -0.24262 -0.108 0.76199 -0.3093 0.0060907 0.039329 0.029417 -0.5741 -0.65207 -0.33194 -0.18725 -0.087579 -0.0090037 3.0696 -0.013185 0.27535 0.35541 -0.046327 -0.38174 -0.25635 -0.16403 -0.52539 0.049488 -0.16678 -0.28379 0.0028277 -0.37609 0.052049 -0.099859 -0.63103 -0.12364 -0.24948 -0.13838 0.0017986 -0.022563 -0.075873 3.6569 -0.15033 -0.46285 0.34187 0.34568 0.05453 -0.18381 -0.14857 0.59661 Amplification Peak 20 - CN values 10p14 chr10:9380131-9398288(probes 417534:417541) chr10:9387782-9388681(probes 417535:417540) chr10:9387782-9417502(probes 417535:417543) 0.23955 0.23955 Actual Copy Change Given -0.36898 0.11641 -0.31418 0.20296 0 -0.32884 0.0039924 -0.021456 -0.52026 -0.19223 -0.002128 -0.063454 -0.25351 -0.066543 -0.00019177 0.044176 -0.66931 0.20868 -0.47417 -0.015532 0.57155 -0.030028 3.6569 -0.017606 0.1228 -0.026509 0.48417 -0.27264 -0.022379 0 -0.07603 0.13425 0.20264 0.37052 0.029281 -0.009057 -0.3026 -0.0058298 0.028832 0.11034 -0.1079 -0.0081843 -0.024711 0.0053094 0.17243 -0.042823 -0.65967 0.79609 -0.21138 0.11905 0.05811 0.20368 0.11023 -0.0052579 0.28728 0.13284 -0.14447 0.57997 0.29643 -0.36532 -0.0062408 0.10917 -0.030749 -0.30233 -0.32841 0.27186 0.021609 1.0488 3.6569 0.0050486 -0.32337 0.081877 -0.39987 -0.0021482 -0.00083647 0.066609 -0.37493 -0.3514 -0.39008 0.42136 -0.24147 -0.018296 0.024274 -0.16134 -0.0032218 -0.43598 0.30984 0.042146 -0.097111 -0.013136 0.016346 -0.025961 -0.1444 -0.0026417 -0.26992 -0.028497 -0.23593 -0.15389 -0.032736 -0.15966 0.52487 0.24931 0.38357 0.021891 -0.31477 Amplification Peak 21 - CN values 11q13.3 chr11:69619064-70581423(probes 469421:469958) chr11:70251584-70272725(probes 469747:469755) chr11:68685116-73661633(probes 468934:471170) 4.9498e-14 2.2324e-13 Actual Copy Change Given 3.6569 0.0040704 -0.3073 -0.20729 0.0045306 0 -0.0082916 -0.0015322 0.17147 -0.18946 0.27775 3.6569 -0.0034411 0.15152 -0.0018245 -0.3431 1.5323 3.6569 -0.4461 0.0066705 -0.11998 0 0.14385 0.27174 -0.021702 0.04488 -0.015075 0.16424 -0.063821 0.0048314 0.28521 0.54651 0.19914 1.2873 0.055561 -0.010567 0.0266 3.6569 0.019891 -0.0015843 -0.035328 0.0021439 -0.0073408 0.035634 0.0042643 -0.00068844 0.32693 0.32883 0.32471 2.7828 0.14749 0.20745 -0.33199 0.22555 3.1971 0.0014701 -0.040314 -0.089526 0.12962 3.6569 0 -0.10999 -0.54687 -0.073566 0.022655 -0.05988 -0.020205 1.0239 3.6569 0.0073268 -0.12256 -0.006277 -0.0042671 0.14275 0.1457 -0.046017 0.37229 -0.012135 -0.0060208 3.2943 -0.14873 -0.039418 0 0.053397 0.079206 -0.022859 0.3261 0.38212 0.23255 0.016108 0.11922 -0.022889 -0.055549 3.6569 -0.34525 0.013286 0.12808 0.15038 -0.39829 1.8417 3.5636 3.6569 0.012072 0.009348 0.92491 Amplification Peak 22 - CN values 11q21 chr11:96562424-96566636(probes 477666:477671) chr11:96562623-96566053(probes 477669:477670) chr11:96561968-96566936(probes 477659:477677) 5.7811e-06 3.7459e-05 Actual Copy Change Given 0.18302 2.4709 -0.30928 -0.20729 0.0045306 0 -0.0082916 -1.2929 0.14732 3.6569 0.27088 -0.03991 -0.0022502 0.15152 -0.0018245 3.6569 -0.50085 -0.00087072 -0.0072395 0.0066705 -0.11998 0 -1.2929 -0.32545 -0.021702 0.04488 -0.015075 0.16424 -0.063821 -0.00031945 0.112 -0.19433 0.047559 -0.87282 0.055561 -0.010567 0.0266 -0.37882 0.011822 -0.0015843 -0.035328 0.0021439 -0.0073408 0.035634 0.0042643 -0.031825 0.35765 -0.23846 0.32647 -0.12918 0.3823 0.20745 -0.28359 0.22555 -0.14654 0.0014701 -0.84931 0 0.12962 -0.36416 3.6569 -0.10999 3.6569 -0.073566 0.022655 -0.05988 3.6569 -0.068085 -0.60972 0.0073268 -0.09791 -0.00013144 -0.0042671 -1.2929 0.13576 -0.046017 0.37229 -0.012135 2.8312 -1.2929 -0.14873 2.1653 -0.012425 -1.2929 0.079206 -0.039973 0.34221 0.38212 -0.045367 0.016108 0.11922 -0.022889 -0.055549 -0.35848 -0.36372 0.013286 0.081197 -0.15991 -0.1767 -0.19731 -0.54493 2.3539 0.014974 0.009348 -0.31452 Amplification Peak 23 - CN values 12p12.1 chr12:24723955-25355706(probes 494809:494936) chr12:25312558-25340484(probes 494928:494933) chr12:24733193-25648069(probes 494810:495008) 0.0055721 0.0055721 Actual Copy Change Given 0.79941 -0.0053734 0 0.045289 0.016908 0.44075 0.010923 0.044188 0.97442 -0.1579 0.2726 2.1882 0.0078534 0.047977 0.041951 0.13627 3.6569 0.18145 0.05278 -0.006482 0.28747 -0.012827 -0.17309 0.29263 0.178 0 0.74853 -0.23057 0.63202 0.031017 0.039778 0.19846 0.051672 0.057661 0.6197 0.0055592 -0.30192 0.019835 0.072644 0.3985 0.011065 0.021434 0.53594 0.011722 0.011716 0.3773 3.6569 3.6569 0.191 0.15805 0.33786 0.49223 0.64468 0.16941 0 0.19068 0.13164 3.2977 0.41695 0.80873 -0.22772 0.11964 0.087321 0.43892 0.020805 0.13608 0.064112 1.7533 0.62489 0.0079055 0.083971 0.077633 0.010827 0.35857 0.0094231 0.4061 0.44208 0.15942 0.64302 1.3104 0.3138 0.026317 -0.00075069 1.145 0.5771 0.34196 0.30075 -0.063744 0.33313 0.89711 0 0.1497 -0.040883 0.36685 0.34232 -0.013109 -0.0077962 0.99552 1.3048 0.34814 -0.49246 0.07373 0.19691 0.1693 0.025077 Amplification Peak 24 - CN values 13q21.31 chr13:61961483-61962744(probes 537154:537159) chr13:61961646-61962645(probes 537155:537158) chr13:61961482-61963144(probes 537153:537163) 0.012972 0.078297 Actual Copy Change Given -0.089684 -0.14957 0.046787 -0.21397 -0.51244 -0.31815 -0.1372 -0.6044 -0.24788 3.6569 -0.56623 -0.85456 -0.0027988 0.0094357 -0.16328 -0.43658 -0.19866 -0.033517 -0.44492 -0.018072 -0.0094085 -0.040336 3.6569 -0.35573 -0.065306 -0.077428 -0.022914 -0.7591 -0.26311 -0.54865 -0.023537 -0.21625 -0.050279 0.4166 -0.063623 -0.060365 -0.34264 -0.0047447 -0.16599 -0.019352 -0.14106 -0.2798 -0.25188 -0.53052 -0.068919 -0.0088234 -0.010403 3.6569 0.29336 -0.092903 -0.073384 -0.010596 -0.45252 -0.026198 -0.080397 -0.2697 -0.075363 -0.17584 -0.15533 -0.35442 -0.24776 -0.11553 -0.051191 -0.31311 -0.019913 -0.20519 3.6569 -1.1415 -1.2929 -0.35336 -0.44705 -0.12729 -0.39239 -1.2929 -0.50132 -0.14704 -0.42702 -0.31428 -0.35777 -1.2929 -0.24961 3.0182 -0.71184 -0.13403 -0.026225 -0.4598 0.32819 -0.11189 0.25897 -0.64362 -0.13018 0.047908 -0.13716 -0.0091157 -0.3743 -0.069741 -1.2929 -0.14185 -0.42124 -0.36562 0.39227 -0.73226 -0.17669 -0.067715 -0.2113 Amplification Peak 25 - CN values 13q21.33 chr13:70591229-70593026(probes 538789:538792) chr13:70591328-70592927(probes 538790:538791) chr13:70591128-70593126(probes 538786:538794) 0.012578 0.068432 Actual Copy Change Given -0.089684 -0.14957 0.046787 -0.21397 -0.51244 -0.31815 -0.1372 1.9377 -0.24788 -1.2929 -0.56142 0.79318 -0.0027988 0.0094357 -0.16328 -0.41848 -0.15941 -0.010067 -0.44492 -0.018072 -0.0094085 -0.040336 -0.09837 -0.34313 -0.065306 -0.077428 -0.037659 -0.7591 -0.26311 -0.50469 -0.023537 -0.21625 -0.050279 0.65881 -0.063623 -0.060365 -0.34264 -0.0047447 -0.16539 -0.019352 -0.14106 -0.2798 -0.25188 -0.50352 -0.068919 -0.0088234 -0.010403 1.4607 0.29336 -0.092903 -0.073384 -0.010596 -0.45252 -0.026198 -0.080397 -0.2697 -0.075363 -0.17584 -0.15533 -0.35442 -0.24776 -0.13535 0.00039778 -0.31311 -0.019913 -0.20519 -1.2929 -1.1231 3.6569 -0.35336 -0.44705 -0.12729 -0.39239 0.0010155 0.27996 -0.14704 -0.42702 -0.31212 -0.35777 0.076874 -0.24961 -0.025136 -0.72545 3.1812 -0.026225 -0.4598 0.36821 -0.11189 3.6569 -0.64362 -0.13018 0.047908 -0.13716 -0.0091157 -0.36988 -0.069741 3.6569 -0.14185 -0.42124 -0.36562 -0.024962 -0.71747 -0.17669 -0.067715 -0.18765 Amplification Peak 26 - CN values 13q34 chr13:112571276-113915739(probes 548367:548890) chr13:112665645-112666944(probes 548378:548383) chr13:112580551-113917039(probes 548368:548892) 0.013423 0.13631 Actual Copy Change Given -0.05181 -0.14957 3.6569 -0.21397 -0.51244 0.020794 0.0036622 -0.022678 -0.25613 -0.57318 -0.28848 0.60877 -0.0036787 0.0094357 -0.16328 -0.54964 0.91562 0.25675 -0.45323 -0.018072 -0.0094085 -0.040336 -0.27342 -0.37772 0.11288 -0.077428 -0.037659 -0.84203 -0.26311 -0.041553 -0.023537 -0.22512 -0.050279 0.69515 -0.063623 -0.060365 -0.32254 0.11293 -0.14832 -0.019352 -0.14106 -0.2798 -0.025637 -0.50352 -0.068919 -0.01328 0.058493 3.6569 0.60081 -0.092903 -0.0068112 -0.010596 -0.49352 -0.026198 -0.080397 -0.2697 -0.075363 -0.17584 -0.15533 -0.35442 0.061919 -0.010677 -0.0046964 0.14209 0.36342 -0.042564 -0.1061 -1.1426 -0.70714 -0.34683 -0.44705 3.136 -0.4081 -0.006121 -0.50053 -0.14704 -0.42216 0.1993 -0.37066 -0.36316 -0.24961 -0.0081251 -0.72287 -0.095595 -0.026225 -0.045027 0.15288 -0.11189 0.21773 3.6569 -0.13018 0.047908 -0.13716 -0.0091157 -0.33039 -0.069741 -0.35264 1.4137 -0.42124 -0.36562 -0.55055 -0.74516 -0.37323 -0.067715 -0.15235 Amplification Peak 27 - CN values 14q13.1 chr14:34348215-34350419(probes 552908:552911) chr14:34349059-34349158(probes 552909:552910) chr14:34348114-34350825(probes 552905:552917) 0.00013735 0.00013735 Actual Copy Change Given 0.1581 0.19872 0.062342 -0.23007 -0.50405 -0.31123 0.014696 -1.2929 0.41594 3.6569 1.0182 1.4728 -0.48115 -0.28796 -0.057705 3.6569 -0.084317 1.8193 -0.050724 -0.011878 0.29411 -0.044592 3.6569 0.016032 0.3579 0.043933 0.49231 -0.34747 -0.23458 0.0097086 0.07885 0.25204 0.005241 -1.2929 0.034503 -0.14568 1.1254 -0.25655 0.13152 0.19136 -0.10842 0.0016965 0.021806 -0.1141 0.0094842 0.00082863 0.025829 -0.54028 0.19381 0.033616 0.12223 0.21575 0.36572 -0.002376 -0.13562 -0.017206 -0.13554 0.11655 -0.22665 -0.35032 3.6569 -0.096527 0.015681 0.020507 -0.06903 -0.14259 -0.36953 0.044796 -1.2929 -0.33776 0.31576 -0.06199 0.009906 -0.086346 0.38146 0.022587 -0.42271 -0.042887 2.0522 -1.2929 -0.17583 -0.50609 0.11171 3.5457 0.0098031 -0.40618 -0.33477 -0.063741 0.099172 -0.61176 0.26702 0.94237 -0.0287 0.0075674 -0.15659 0.014888 -1.2929 0.26274 -0.36259 0.93075 0.59039 -0.37877 -0.13264 0.11556 0.032816 Amplification Peak 28 - CN values 15q25.3 chr15:87882798-87884595(probes 594762:594767) chr15:87882997-87884296(probes 594763:594766) chr15:87882997-87884995(probes 594763:594769) 0.095614 0.095614 Actual Copy Change Given -0.031618 -0.025775 0.0082222 -0.017617 -0.20912 -0.048686 -0.0071155 3.6569 0 0.015621 -0.27638 -0.030358 0.0119 -0.070018 -0.04778 -1.2929 0 0.12869 -0.43773 -0.012807 0.53851 0.0063612 0.57202 0.2757 0.11464 0.034169 0.2481 -0.76803 -0.26573 0.020997 -0.092092 -0.0042685 0.0083949 0.11174 -0.04569 0.00065996 -0.28892 -0.085402 -0.0059858 0.13187 -0.037289 0.018106 0.043538 -0.016271 0 0.47096 -0.31554 -0.012887 -0.31131 0.096102 0.086729 0.20757 -0.042752 0.0056108 0.22426 -0.027439 -0.092804 0.073986 -0.006645 0.35787 0.021774 -0.0036032 -0.67391 0.043545 -0.049479 0.039872 0 0.51849 1.6642 -0.0045615 0 -0.027709 0 -0.1985 -0.20825 -0.12117 -0.4131 -0.067302 0.54676 -0.27734 0.010893 -0.00070386 -0.71921 3.6505 0 0.39433 0.45173 -0.13157 -0.092285 -0.57115 -0.075017 -0.031392 0.0092366 -0.34548 0 0.013933 3.6569 -0.12432 0.089744 0.09745 -0.085609 0.096505 0.16642 0.011132 0.48723 Amplification Peak 29 - CN values 16p13.13 chr16:10697260-10698657(probes 601770:601775) chr16:10697359-10698558(probes 601771:601774) chr16:10697359-10707616(probes 601771:601777) 0.068432 0.068432 Actual Copy Change Given -0.033307 0.12811 0.012935 -0.028675 -0.17574 0.17086 0.0086336 3.064 -0.22376 -0.21022 -0.0058714 0.70213 -0.0042055 0.074905 0.040937 -0.50819 0.22137 -0.004251 -0.0038252 -0.010837 -0.092138 0.0038392 -0.27289 -0.32637 -0.074812 -0.010601 -0.0018937 -0.39477 0.029948 -0.025367 0.033658 -0.18212 0.0039797 0.073381 -0.11164 0.067517 -0.04227 0.022113 0.017116 -0.010363 0.0064591 -0.1778 0.24923 -0.49876 -0.0031307 0.78723 0.027365 -0.0097118 -0.15117 -0.12432 -0.046291 0.15489 -0.031412 0.0012546 -0.011863 -0.05165 0.0027465 -0.16608 -0.19892 0.0083872 0.018147 0.11511 -0.7024 -0.088224 -0.28656 -0.0039573 0.017049 -0.027786 -0.082735 0.020205 0.16041 0.0072886 -0.015518 3.6569 0.47974 -0.12756 0 0.23832 -0.049392 -0.1155 -0.0298 0 0.06332 -0.013484 0.012427 -0.023182 0.031703 0.033422 3.6569 -0.63272 0.043593 0.19258 -0.092195 -0.0059115 -0.31205 0.016564 3.6569 0.50807 0.027402 0.13887 -0.10495 0.023994 -0.18925 -0.018587 0.18571 Amplification Peak 30 - CN values 18p11.32 chr18:1629032-1630055(probes 648134:648141) chr18:1629244-1629956(probes 648135:648140) chr18:1629031-1692910(probes 648133:648145) 0.0028522 0.0028522 Actual Copy Change Given 0.26453 -0.014021 -0.3028 -0.2059 -0.016977 -0.0025869 -0.1227 3.6569 -0.063078 0.17897 0.23178 2.8976 0.0057361 -0.22328 0.037429 -1.2929 -0.37011 0.13857 0.038831 -0.010245 0.054598 -0.022566 3.6569 0.90246 -0.066754 -0.078664 -0.021721 0.27118 0.92262 0.033695 -0.01919 0.38616 -0.19008 -0.72803 -0.12169 0.59068 -0.3026 0.0083951 0.016034 0.088283 -0.10585 -0.0091881 0.25047 0.0079236 0.0075941 -0.021962 0.73442 1.0906 -0.14142 0.45805 -0.32351 0.39006 0.27103 -0.012808 -0.0045905 0.21152 0.011684 -0.17495 -0.11992 1.0732 -0.23612 0.13494 0.7791 -0.052757 1.2316 0.75143 1.6035 1.5889 -0.63883 -0.019608 0.086915 -0.094983 0.0039025 -0.10502 0.026327 0.098744 0.45682 0.10992 0.48177 0.15055 0.1815 0.48667 0.057487 -0.037898 -0.009906 0.11484 -0.042433 0.070294 0.36592 0.12676 0.090088 0.22134 0.012166 0.0071837 0.27555 -0.0655 3.6569 0.57642 0.49012 0.017107 0.014773 0.10909 0.021683 -0.083913 1.6045 Amplification Peak 31 - CN values 18q12.1 chr18:1-80373285(probes 647962:665046) chr18:27855370-27856479(probes 653299:653304) chr18:27855370-27881687(probes 653299:653307) 0.039532 1 Actual Copy Change Given 0.24537 0.14882 0.4281 0.033205 -0.016977 -0.32975 0.004293 -0.042686 -0.10848 0.51937 0.21621 -0.075196 0.0057361 -0.2257 0.037429 0.18241 -0.14415 -0.14753 0.41206 -0.010245 0.054598 -0.022566 -0.20786 0.60227 -0.066754 -0.078664 -0.021721 0.27118 -0.27343 0.0070627 -0.01919 -0.20489 0.31545 0.072948 -0.12169 -0.08696 0.013296 0.0083951 -0.011387 0.088283 0.20008 -0.0091881 0.25047 0.0079236 0.0075941 -0.021962 0.014953 0.5435 -0.14447 0.011969 -0.3172 0.39006 0.21998 -0.012808 -0.0045905 -0.23948 0.011684 -0.17495 0.073614 -0.0065598 0.21627 0.13494 0.76172 -0.052757 0.15912 -0.032506 3.6569 3.6569 -0.08071 -0.019608 -0.16297 -0.094983 0.0039025 -0.10502 -0.37617 -0.15653 3.6569 -0.15612 0.086766 0.10017 0.1815 0.48667 0.057487 -0.037898 -0.009906 -0.037894 -0.045918 -0.20745 -1.2929 -0.1187 -0.10758 -0.24989 0.26655 -0.69779 0.29921 -0.0655 0.067064 0.11157 0.088624 1.9711 2.2946 0.1003 0.021683 -0.083913 -0.14607 Amplification Peak 32 - CN values 18q12.1 chr18:21251780-32624707(probes 651324:654596) chr18:29596550-29596649(probes 653747:653748) chr18:29596550-29596948(probes 653747:653751) 0.063349 0.18171 Actual Copy Change Given 0.24537 0.14882 0.4281 0.033205 -0.016977 -0.32975 0.004293 -0.042686 -0.10848 -0.0094117 0.21621 0.020391 0.0057361 -0.2257 0.037429 3.6569 -0.14415 -0.14753 0.41206 -0.010245 0.054598 -0.022566 3.6569 0.60227 -0.066754 -0.078664 -0.021721 0.21566 -0.27343 0.0070627 -0.01919 -0.20489 0.31545 0.072948 -0.12169 -0.08696 0.013296 0.0083951 -0.011387 0.088283 0.010944 -0.0091881 0.25047 0.0079236 0.0075941 -0.021962 0.014953 0.5435 -0.48359 0.011969 -0.3172 0.39006 0.21998 -0.012808 -0.0045905 -0.23948 0.011684 -0.17495 0.073614 -0.0065598 -0.0036268 0.13494 -0.68978 -0.052757 0.15912 -0.032506 -0.27359 0.60468 -1.2929 -0.019608 -0.43966 -0.094983 0.0039025 -1.2929 -0.37617 -0.15653 3.6569 -0.15612 0.086766 -1.2929 0.1815 0.48667 0.057487 -0.063929 -0.009906 -0.037894 -0.045918 -0.20745 -1.2929 -0.64305 -0.10758 0.55813 0.39272 -0.372 0.27952 -0.0655 0.16059 0.11157 0.088624 1.9711 1.3118 0.070066 0.021683 -0.083913 -0.14307 Amplification Peak 33 - CN values 19q13.11 chr19:33204397-33457669(probes 679066:679157) chr19:33240505-33278114(probes 679089:679093) chr19:28695331-40389934(probes 677812:682863) 0.00039347 0.00039347 Actual Copy Change Given 0.35377 0.14312 0.24373 0.88044 3.6569 0.34824 -0.010326 -0.016809 -0.22279 0.24091 0.24345 -0.018273 -0.0071468 0.30287 -0.0081364 0.0033103 1.748 0.23859 0.027092 0.011664 0.23573 -0.011251 0.25654 -0.28407 0.48906 0.006728 0.010439 1.9398 0.039789 0.53267 0.018594 0.16928 -0.045043 -0.35673 0.15222 0.44703 0.71485 -0.0056626 0.016739 -0.0067334 0.066569 0.031274 0.26719 0.017724 0.0049265 -0.021682 -0.038259 0.45954 0.40534 1.338 -0.036054 -0.029157 0.33133 0.024606 0.0013988 0.0085534 0.12152 -0.12858 0.059906 -0.014071 0.0036528 0.12127 -0.73257 0.27923 0.0029075 0.30231 0.39882 -0.00027561 -0.66125 -0.00017709 0.075104 0.073659 -0.0127 0.1211 -0.06061 1.4113 -0.10096 0.1049 0.21132 0.4814 0.17472 -0.049542 1.121 0.09126 0.25984 0.32264 -0.0046686 0.26235 0.043549 0.66445 0.10897 0.38691 0.065314 0.34901 0.28009 -0.0020967 -0.038711 0.19364 0.28931 0.75033 3.6009 3.2073 0.42888 -0.077233 -0.03242 Amplification Peak 34 - CN values 20p11.22 chr20:22081801-22084218(probes 697371:697380) chr20:22081900-22084119(probes 697372:697379) chr20:22081900-22094018(probes 697372:697382) 0.0069402 0.0069402 Actual Copy Change Given 0.31083 0.13615 0.35132 -0.042997 0.10012 0.010259 0.01285 0.013276 0.24112 0.0065691 1.0172 1.3121 0 0.12933 0.097846 -1.2929 0.049212 0.25334 0.48227 -0.0041891 0.54177 0.0063343 3.6569 1.4465 0.33525 0.11442 0.24475 -0.086045 -0.0045428 -0.03848 0.068062 -0.15496 0 -0.25198 0.02609 0.35883 -0.1262 0.01997 0.21879 0.032278 0.056122 -0.00665 0.22494 0.13294 0.013047 0.24704 0.01927 1.4767 1.1454 0.059309 0.074357 0.20389 0.38571 -0.02838 0.32959 -0.24688 -0.0022469 0.32 0.2064 -0.37498 0.078179 0.027257 -0.26955 0.20744 0.03322 -0.15754 -1.2929 -0.048154 3.6569 0.014345 1.089 0.068119 -0.0086989 3.6569 0.26982 0.18833 0.41344 0.1432 0.26315 3.332 0.13527 1.0608 -0.072541 0.085156 0.13855 0.38702 0.11143 -0.19606 0.15692 0.0073346 0.011011 0.19255 0.015146 -0.0086542 0.76112 0.012052 3.6569 0.30309 0.045424 0.0026743 0.46147 0.035951 0.15753 0.015788 0.2371 Amplification Peak 35 - CN values 20q11.22 chr20:26219450-35801235(probes 698336:700791) chr20:34298515-34368629(probes 699904:699918) chr20:33784109-34825161(probes 699730:700167) 0.029924 0.029924 Actual Copy Change Given 0.36875 0.13615 0.35132 -0.19836 0.41438 -0.0036812 0.01285 1.7584 3.6569 0.6764 0.5543 -0.030885 0 0.12933 0.097846 0 0.072596 0.25334 0.018729 -0.0041891 1.4486 0.12866 0.35681 2.169 0.33525 0.11442 0.24475 0.43122 -0.0045428 -0.018382 0.068062 0.19202 0 0.1188 0.038893 0.35883 -0.1262 0.030481 0.24554 0.37456 0.056122 -0.00665 0.22494 0.13294 0.013047 0.94899 -0.32042 1.9965 0.094752 0.11094 0.46637 0.20389 0.15068 -0.02838 0.95816 0.49721 -0.0022469 0.039166 0.2064 0.34401 0.078179 0.055107 -0.26955 0.71645 0.03322 0.07252 -0.015309 2.3228 -0.67633 0.014345 0.3302 0.068119 -0.0086989 0.24371 0.05168 0.18833 0.83746 0.1432 0.26315 0.52651 0.69597 1.0815 0.7553 0.06655 0.41325 1.3291 0.21457 0.25713 0.15692 0.0073346 0.40988 0.19255 0.015146 -0.0086542 1.876 0.012052 0.037322 0.35479 0.3291 0.38858 0.51246 0.058532 0.1604 0.20571 1.0878 Amplification Peak 36 - CN values 21q21.1 chr21:16970634-16973377(probes 710598:710613) chr21:16970833-16971985(probes 710599:710606) chr21:16970633-16977877(probes 710597:710617) 0.012038 0.012038 Actual Copy Change Given -0.43985 -0.15731 0.33537 0.13965 -0.35889 -0.012028 0.00074765 -0.010905 0.15978 -0.1196 -0.0016298 3.0577 0.007146 -0.17741 -0.00040091 -1.2929 -0.14824 0.15035 -0.44242 0.0044084 0.95132 -0.024662 3.6569 -0.095061 -0.04944 0.032083 -0.0067288 -0.7744 -0.064167 -0.53136 -0.081137 -0.16269 -0.19297 -0.026713 -0.15139 -0.074978 -0.31372 -0.37962 -0.16745 -0.084447 -0.0084668 -0.001719 -0.25279 -0.072998 0.16936 -0.031235 0.35172 -0.038828 0.4865 -0.11341 -0.084263 0.15991 -0.42538 -0.0041153 0.79791 0.32998 -0.23805 0.21786 -0.011761 -0.34568 -0.1335 0.00020202 0.84901 -0.090827 -0.0076626 -0.3284 0.03471 2.6275 0.045935 -0.34075 -0.20166 -0.13291 -0.0011914 -1.2929 -0.24289 -0.52674 0.062559 0.033634 -0.34019 -1.2929 -0.21887 0.017654 -0.68587 -0.083535 -0.015898 0.74321 -0.14637 -0.053112 -1.2929 0.039499 -0.0071145 -0.48414 -0.018605 -0.33397 3.1253 -0.03045 3.6569 -0.15434 0.11472 -0.010872 0.0079916 0.088404 -0.089024 -0.065414 0.67096 Amplification Peak 37 - CN values Xp21.3 chrX:26085791-26087188(probes 733697:733700) chrX:26085890-26086889(probes 733698:733699) chrX:26085790-26087488(probes 733696:733706) 0.00034988 0.00034988 Actual Copy Change Given -0.43197 0.11753 0.041131 -0.24714 -0.014425 -0.00029463 -0.03868 -0.15041 -0.13855 -1.2929 0.28184 -0.072679 -0.035696 -0.080274 0.0062632 -1.2929 -0.36335 0.14445 0.42587 -0.0043164 0.32911 0.029959 3.6569 -0.5863 0.043624 0.039395 0.46235 -0.72165 0.020241 -0.039935 0.030455 0.18348 0.14108 -0.35263 0.15697 -0.094063 0.76623 0.076799 -0.12295 0.10346 0.062323 -0.0016884 -0.26153 0.043517 -0.074735 1.8396 -0.33109 0.41553 0.54773 0.34733 0.009234 -0.23844 -0.39852 0.15027 -0.086664 0.16084 0.066879 -0.17504 0.029484 0.37936 0.10572 -0.22024 0 0.45656 0.031505 0.020882 -0.12601 0.50185 3.6569 -0.033897 -0.4592 -0.024697 0.17535 3.6569 -0.25933 0.31061 -0.40566 0.083164 0.28513 -0.28221 -0.24757 0.010144 0.08796 3.6569 0.25874 0.30392 -0.33365 0.036564 3.6569 0.038834 0.10603 0.015901 0.097941 -0.016362 0.2101 -0.03308 3.6569 0.57829 0.22709 0.0092008 0.41371 0.037787 -0.04494 -0.13283 -0.27839 Amplification Peak 38 - CN values Xq22.3 chrX:107905794-109989371(probes 747814:748438) chrX:108230411-108268510(probes 747977:747987) chrX:107909993-109999124(probes 747815:748440) 0.012038 0.012038 Actual Copy Change Given 0.34754 0.70971 0.69132 -0.029851 -0.022958 -0.00029463 -0.03868 -0.11922 -0.13855 3.6569 1.3553 3.2697 -0.048353 0.077509 0.0062632 0.13532 0.30403 -0.11609 1.3264 -0.0043164 0.32911 0.029959 -0.29946 0.037304 0.76704 0.039395 0.46235 0.18783 0.020241 0.02807 0.030455 0.17322 0.14108 0.35394 0.15697 0.17355 0.26279 0.030884 -0.144 0.6373 0.048316 -0.0016884 3.6569 0.91906 -0.074735 -0.055561 0.2906 0.4291 0.21246 0.57598 0.44612 -0.23519 0.52328 0.15027 -0.17314 0.14901 0.066879 0.28794 0.038759 0.54706 0.24839 -0.21098 -0.0075979 1.6033 0.023351 0.020882 -0.10962 0.19378 0.050939 -0.033897 -0.47102 -0.034059 -0.27953 -0.15701 0.38977 0.30968 1.2042 0.083164 0.31494 -0.29223 -0.24757 0.019594 0.086486 0.025944 0.25874 0.28938 0.12403 0.25579 -0.13761 0.017447 0.10603 -0.1864 0.097941 -0.016362 0.19062 -0.03308 0.38585 0.57829 0.33671 0.33886 0.41371 -0.0077275 -0.044943 0.032829 0.72732 Amplification Peak 39 - CN values Yq11.221 chrY:12512884-12514081(probes 758338:758341) chrY:12512983-12513982(probes 758339:758340) chrY:12512783-12521547(probes 758335:758345) 0.016014 0.016014 Actual Copy Change Given 0.39152 0.048789 0.5446 -0.4913 -0.9129 -0.059305 -0.24586 -1.2929 -0.30223 3.6569 -0.84151 -1.2929 0.29519 -0.52586 0.50545 3.6569 -0.18018 -0.39001 -1.2929 -0.083309 0.56711 3.6569 -1.2929 0.4002 -0.62787 0.087029 -0.041565 -0.31639 1.4968 -0.44456 -0.1895 -0.61508 -0.22361 -0.58541 -0.10913 -0.23796 -0.78433 -0.35972 0.19915 -0.47237 2.0531 -0.50251 0.53467 -1.0499 -0.2994 -1.0687 -0.75064 0.55695 1.9485 -0.41626 0.21709 0.54761 0.37132 -0.5803 -0.73985 -0.66331 -0.16553 -0.66444 -0.46385 0.73629 3.6569 -0.42917 -1.2929 -0.47907 -0.71893 -0.42496 3.6569 -1.2929 -1.2929 0.33212 0.4472 -0.043414 -0.18418 0.48523 -1.0087 -1.2929 -0.42499 0.30234 -1.1778 -0.3916 -0.40808 3.6569 -0.86715 -1.2929 -0.29978 -1.217 -0.79093 -0.37732 -1.2929 0.13331 -0.36222 0.0043881 -0.14956 -0.68771 -0.96544 -0.11048 -1.2929 -0.93627 -0.051285 0.33127 -1.2929 0.1332 -0.67985 0.10003 -0.49321 Deletion Peak 1 - CN values 1p36.12 chr1:1-149927868(probes 1:36122) chr1:21967189-22143445(probes 6796:6820) chr1:22127717-22130044(probes 6809:6810) 0.014792 0.13554 Actual Copy Change Given -0.36735 -0.0079156 -0.26259 0.0040423 -0.011192 0.004153 0.012849 0.59268 -0.21365 0.12125 -0.059756 -0.007406 0.00022092 -0.24646 0 -0.27238 -0.19722 0 -0.46518 -0.014573 -0.27713 0.028883 -0.30993 -0.21506 -0.064288 -0.012006 -0.00037203 0.17865 -0.26372 0.010557 -0.025444 -0.18416 0.0068245 -0.31332 0.044043 -0.020884 0.04612 -0.34855 0.014697 0.028226 -0.052474 0.0070387 -0.25727 0.011116 -0.025829 0.50978 -0.314 0.59516 -0.30579 -0.13268 -0.075267 -0.04162 -0.50901 -0.016641 0.00092352 0.21303 -0.2364 -0.17326 -0.08817 -0.33322 -0.23966 0 -0.69303 -0.081459 -0.0090016 -0.20697 -0.42847 -0.025007 -0.048695 0.029119 -0.4395 0.023277 0.0041392 -0.035878 -0.21805 -0.17712 -0.00064936 0.1623 -0.40002 0.040555 -0.024148 -0.009546 0.074189 -0.1362 -0.2705 -0.38525 -0.189 0 -0.0096506 -0.63961 -0.039862 -0.025962 0.04339 0.0013408 -0.35965 0.033061 0.11081 -0.167 -0.45921 -0.10134 -0.49249 0.036271 -0.17398 -0.035922 -0.004574 Deletion Peak 2 - CN values 1p13.2 chr1:100738513-149927868(probes 30739:36122) chr1:112501774-112525773(probes 33773:33786) chr1:95105085-149905703(probes 29236:36109) 8.9432e-05 0.0016661 Actual Copy Change Given -0.41109 -0.0059722 -0.27012 0.0040423 0.015497 -0.32222 0.012849 0.0022298 -0.2078 -0.51909 -0.059756 -0.025058 0.0057471 -0.020017 0 -0.23869 -0.43883 0 -0.43911 -0.014573 -0.27713 0.028883 -0.66812 -0.19829 -0.064288 -0.012006 -0.0032015 0.26226 -0.26372 0.014135 -0.025444 -0.18416 0.0068245 -0.35556 0.044043 -0.014827 -0.29694 -0.34855 0 -0.13009 -0.052474 0.0070387 -0.25727 -0.50875 -0.025829 0 -0.00072969 0.53244 0.047904 -0.11169 -0.22904 -0.042416 -0.45312 -0.016641 0.00092352 -0.24795 -0.2364 -0.17326 -0.21147 -0.35045 -0.23276 -0.10121 -0.68504 -0.081459 -0.31939 -0.20697 -0.37815 0.60245 -0.66769 0.0039923 -0.43401 0.023277 0.0041392 -0.2125 -0.2236 -0.42346 -0.00064936 -0.16815 -0.39248 -0.021883 -0.17076 0.02062 0.074948 -0.1731 0.0056526 -0.41431 -0.096434 0 -0.021725 -0.62045 -0.039862 -0.025962 0.04339 -0.34701 -0.31015 0 -0.31487 0.23369 -0.12378 -0.15351 -1.2929 -0.75206 -0.34614 -0.035922 -0.23908 Deletion Peak 3 - CN values 2q22.1 chr2:140576645-142885137(probes 97730:98432) chr2:140229051-142145084(probes 97539:98284) chr2:140930196-141473782(probes 97861:98062) 0.00033829 0.0052907 Actual Copy Change Given -1.2205 -0.15261 -0.27832 0.013814 -0.072445 0.041778 0 -0.037619 -0.20899 0.37394 0.31731 1.3811 -0.0050121 -0.17019 0.014489 0.063454 -0.10976 -0.025683 -1.2929 0.0071489 -0.01311 0.01666 -0.023867 -0.024849 0.14878 0.018638 -0.037827 0.20097 0.015712 -0.023138 -0.0037506 0.024099 0.003745 -0.037104 -0.0020833 0.25181 0.17539 -0.11578 -0.01995 -0.24038 0.0035051 0 0.0030411 -0.29447 0.066176 -0.0059417 -0.31492 -0.55188 0.013832 -0.045236 -0.087483 0.21344 0.034838 -0.0035565 0.043185 -0.46556 0.26538 0.31793 -0.11895 0.00093188 0.16542 -0.00639 0.039142 0.15723 0.0061221 -0.33231 0.12153 -0.53595 0.053107 -0.0026101 0.49064 0.069682 0.0051254 0.1657 0.22037 -0.079529 -0.42959 0 0.32209 0.08811 -0.0020892 -0.5022 -0.58052 -0.022685 -0.0063509 0.32471 0.30778 -0.097887 0.062861 -0.018436 0.11852 -0.62246 0.21997 0 0.17177 0.00045197 -0.044771 0.20532 -0.77672 -0.13636 0 1.4745 0.12492 0.0082026 -0.091077 Deletion Peak 4 - CN values 2q36.2 chr2:208817895-242193529(probes 116663:126688) chr2:224360640-224421440(probes 121093:121105) chr2:212567744-242193529(probes 117775:126688) 0.0021881 0.082325 Actual Copy Change Given -0.041442 -0.15957 -0.27832 0.013814 0.014992 0.041778 0 0.008454 -0.20952 0.2097 0.17118 -0.087328 0.0024993 0.034317 0.014489 -0.5065 -0.47938 -0.025683 -0.92715 0.0071489 -0.046043 0.01666 -0.022977 -0.024849 0.14878 0.018638 0.24123 0.14281 0.01576 0.019078 -0.0037506 0.02713 0.003745 0.71983 -0.0020833 -0.054766 0.27438 0.024841 0.021074 0 0.0035051 0 0.0030411 -0.29447 -0.078294 -0.53174 -0.31133 -0.00089346 -0.1535 -0.035662 -0.076076 0.21344 -0.014059 -0.0035565 0.043185 -0.02755 0.0079564 0.18496 -0.11895 -0.01257 0.17113 -0.00639 -0.68654 0.16473 0.0061221 0.0041868 0.030107 0.039762 -0.64457 -0.0026101 -0.62718 0.069682 0.0051254 0.12758 0.22037 -0.15367 -0.4346 0 -0.38063 -0.17005 0 0.017902 -1.1104 0 0.0027848 -0.43442 -0.3742 -0.038597 0.07879 0 0.11852 -0.25532 -0.14596 0.01155 0.17785 0.00045197 -0.31845 -0.16267 -0.018982 -0.14633 -0.30498 -0.24344 -0.17745 0.0082026 -0.40634 Deletion Peak 5 - CN values 3p12.1 chr3:77646286-94014253(probes 147555:151039) chr3:85404557-86087854(probes 149332:149474) chr3:21031377-91564608(probes 131812:150783) 2.8396e-08 2.6433e-08 Actual Copy Change Given -0.48614 -0.1653 -0.34727 -0.2312 -0.49289 -0.32043 -0.13528 -0.61072 -0.23612 -0.17219 -0.28815 -0.11458 -0.25309 -0.29354 0.088729 -0.41991 -0.51676 -0.14789 -0.46564 0.011957 -0.24406 -0.018275 -0.37006 -0.62 -0.061521 -0.076137 -0.01635 -0.76958 -0.2695 -0.57064 -0.0015941 -0.1871 -0.19055 -0.38681 -0.14604 -0.13478 -0.020033 -0.37649 -0.17847 -0.24219 -0.12106 0.17278 -0.26256 -0.0099958 -0.073792 -0.534 -0.32717 -0.59285 -0.53559 -0.34748 0.33298 -0.22635 -1.2929 0 -0.14128 -0.24648 -0.23327 -0.17299 -0.14896 1.2028 -0.23266 -0.088169 -0.69178 -0.095148 -0.33915 -0.20563 -0.37511 0.031273 -0.63854 -0.34262 -0.44232 -0.11528 -0.39286 -0.15384 -0.45814 -0.47133 -0.43667 0.065821 0.4088 -0.24314 -0.22547 -0.5074 -0.65323 -0.16783 -0.047334 -0.43847 -0.35605 -0.049812 -0.0059807 -0.61092 -0.12005 -0.24428 -0.14913 0.0010767 -0.40997 -0.012516 0.49401 -0.15516 -0.47005 -0.0071191 -1.0575 -0.73304 -0.31856 0.1681 -0.41132 Deletion Peak 6 - CN values 4p15.33 chr4:14888143-15004496(probes 183989:184019) chr4:14896493-15004496(probes 183993:184019) chr4:14922308-14953129(probes 183999:184011) 1.2505e-05 8.7976e-05 Actual Copy Change Given -0.12302 0.15943 -0.62856 -0.060052 0.00011338 0.25959 -0.13908 -1.2929 -0.54865 -0.18394 -0.039605 -0.1318 -0.0009124 -0.1358 -0.036721 3.6569 -0.47707 0.10259 -0.46528 -0.017582 -0.30355 0.00023455 -0.32267 0.0028339 -0.26751 -0.016963 -0.027232 -1.2434 -0.26688 -0.17324 0.038173 -0.16504 -0.14293 -0.40234 -0.15375 -0.077566 -0.25979 -0.37591 -0.13819 -0.14352 -0.12095 -0.014133 -0.26338 -0.18087 -0.052512 -0.53406 -0.33329 -0.038779 -0.36444 -0.24177 -0.11208 -0.0077732 -0.67413 0.00023559 -0.11943 -0.28432 -0.22926 -0.1586 -0.11876 -0.71534 3.6569 -0.024795 -0.69346 1.1251 -0.041266 -0.20087 -0.36165 0.55594 -1.2929 -0.34547 -0.43656 -0.081477 -0.015418 -0.010644 -0.24674 -0.48163 -0.081256 0.04515 -0.32189 0.52594 -0.23917 -0.026526 -0.70848 -1.2929 -0.29636 -0.4244 0.016407 -0.11316 -1.2929 -0.63622 -0.0055173 -0.25383 -0.071825 -0.35227 -0.35418 0.0018875 -1.2929 -0.17719 -0.43252 -0.21969 -0.97071 -0.40847 -0.19108 -0.1385 -0.16657 Deletion Peak 7 - CN values 4p12 chr4:44722496-46735637(probes 191040:191493) chr4:46206421-46390263(probes 191355:191428) chr4:46303837-46305853(probes 191392:191393) 0.028041 0.094639 Actual Copy Change Given -0.090932 0.15943 -0.256 -0.060052 0.00011338 0.017647 -0.13908 -0.035765 -0.54865 -0.16492 -0.30049 -0.14102 -0.0009124 -0.1358 -0.036721 -0.073932 -0.47707 1.6655 0.10955 -0.017582 -0.278 0.00023455 -0.27515 0.0028339 -0.049412 -0.016963 -0.027232 -1.2367 -0.26688 -0.18157 0.038173 -0.36022 -0.14293 -0.39406 -0.15375 -0.077566 -0.26388 -0.023206 -0.13819 -0.14352 0.091929 -0.014133 -0.26338 -0.18087 -0.052512 -0.53026 -0.31746 -0.038779 -0.36444 -0.089091 -0.11208 0.17592 -0.65078 0.00023559 -0.11943 -0.28432 -0.22926 -0.1586 -0.11876 -0.034803 -0.1816 -0.024795 -0.69346 -0.2929 -0.041266 -0.20819 -0.35968 0.022185 -0.6155 -0.34547 -0.16525 -0.081477 -0.0034273 -0.0010268 -0.24674 -0.46543 -0.030081 0.04515 -0.05534 1.2954 0.17449 -0.039137 -0.70487 -0.21299 -0.29636 -0.8286 -0.27215 -0.10773 0.077675 -0.63622 -0.0055173 0.1923 -0.071825 0.0071941 -0.39278 0.0018875 -0.24152 -0.16367 -0.43252 -0.21969 1.3534 -0.7873 -0.19108 -0.066444 -0.23324 Deletion Peak 8 - CN values 4q22.1 chr4:79299357-190214555(probes 199236:224171) chr4:90127049-91615344(probes 202250:202613) chr4:90308152-91283388(probes 202302:202530) 0.0010675 0.034885 Actual Copy Change Given 0.18354 0.15943 -0.26751 0.011321 0.00011338 0.017647 -0.13908 -0.58822 0.099555 -0.12049 -0.25005 -0.019392 -0.0009124 -0.1358 -0.036721 0.053121 -0.47707 -0.14444 -0.46004 -0.017582 -0.27987 0.00023455 -0.28971 0.0025129 -0.049412 -0.016963 0.24775 -0.75943 -0.26688 -0.50598 0.038173 -0.0078172 -0.14293 -0.30629 -0.15845 -0.077566 0 -0.080558 -0.17475 -0.12785 -0.11918 -0.014133 -0.24918 -0.0069974 -0.072662 -0.523 -0.30077 -0.017793 -0.19254 -0.10856 0.031084 -0.0062074 -0.42484 0.00023559 -0.11943 -0.64929 -0.22926 -0.1586 -0.11876 0.22413 -0.2341 -0.08855 -0.68041 -0.064598 -0.041266 -0.0042643 -0.34627 -0.54822 -0.6285 -0.0050018 -0.16525 -0.12899 -0.385 -0.014743 -0.24674 -0.44722 0.026815 0.04515 -0.40232 -0.25859 0.12936 -0.0077769 -0.68841 -0.16066 -0.28698 -0.43003 -0.63995 0.082132 -0.10546 -0.6258 -0.11901 -0.24656 -0.071825 -0.021867 -0.33597 0.0018875 -0.1913 -0.13955 -0.42187 0.20818 -0.55196 -0.66637 -0.18544 -0.066444 -0.41365 Deletion Peak 9 - CN values 4q34.1 chr4:152099336-190214555(probes 217095:224171) chr4:168092317-186571789(probes 220644:223984) chr4:127223544-190214555(probes 211656:224171) 3.9904e-05 0.034885 Actual Copy Change Given -0.050323 0.13138 -0.62788 -0.22299 0.0042021 0.017647 -0.13908 -0.62549 -0.5547 -0.17873 -0.25005 -0.18651 -0.0009124 -0.1358 -0.036721 0.032236 -0.46551 -0.14444 -0.46004 -0.017582 -0.27987 0.00023455 -0.40045 -0.61915 -0.067073 -0.016963 -0.02313 -0.75291 -0.26688 -0.53867 0.038173 -0.0078172 -0.14293 -0.60889 -0.15845 -0.23421 -0.025409 -0.30366 -0.16346 -0.12785 -0.11918 -0.014133 -0.52625 -0.0069974 -0.072662 -0.523 -0.30742 -0.017793 -0.046509 -0.10856 -0.025142 -0.0062074 -0.46357 -0.018809 -0.11943 -0.089395 -0.22524 -0.1586 -0.11876 -0.36349 -0.25332 -0.23832 -0.7139 -0.07395 -0.041266 -0.040324 -0.39091 -0.57697 -0.71791 -0.00063128 -0.18976 -0.12899 -0.385 0.027706 -0.24674 -0.47989 0.012518 0.04515 -0.43983 -0.2838 -0.056313 -0.53358 -0.21033 -0.15417 -0.29665 -0.4442 -0.33779 0.082132 0.45986 -0.624 -0.11901 -0.24656 -0.1288 -0.0074816 -0.32471 0.0018875 -0.35672 -0.15557 -0.47238 -0.3677 -0.53718 -0.54347 -0.198 -0.066444 -0.65063 Deletion Peak 10 - CN values 5p12 chr5:44815307-50830121(probes 234080:234239) chr5:45243842-50830121(probes 234177:234239) chr5:45359627-45371728(probes 234209:234210) 0.0018617 0.19584 Actual Copy Change Given 0.94176 0.60801 1.0205 0.28765 0.10048 0.19305 0.3793 1.5617 0.40989 0.95031 0.30033 -0.13723 0.00062917 1.884 0.93411 0.10129 0.79115 0.1439 2.598 0 0.61612 0.2615 0.22609 1.2663 0.14186 0.15408 0.42208 1.5787 0.021201 0.71604 0.058088 0.12743 0.53757 0.24544 -0.0033052 0.18358 0.86032 -0.0018717 0.62449 0.3791 0.10549 0.4924 0.23062 0.12464 -0.0023742 1.0927 -0.34035 1.5091 0.24179 0.5606 -0.12861 0.30985 0.11842 0.07313 0.30581 1.9003 0.11342 0.071557 0.11211 0.64636 0.27447 0.38809 0.7588 2.3937 0.41731 0.058642 0.42316 0.90327 -0.010539 1.1083 0.082543 0.29532 0.0010185 0.50989 0.46768 0.28695 0.48226 1.7166 0.059336 2.1692 0.18669 3.6569 1.5344 0.075215 0.81243 0.29875 0.15687 0.70769 0.032142 0.024023 0.23422 0.54835 0.61481 0.3388 0.93745 0.19983 0.062088 0.21741 0.18288 0.12998 0.39207 0.035867 0.76715 0.10092 0.38469 Deletion Peak 11 - CN values 5q12.1 chr5:58858255-60489091(probes 236272:236612) chr5:58955898-60489091(probes 236286:236612) chr5:51600801-137691983(probes 234425:255251) 1.1918e-05 0.022466 Actual Copy Change Given -0.43991 -0.16533 -0.30247 -0.36934 -0.50693 -0.31966 -0.13391 -0.5589 -0.21072 -0.50773 -0.2822 -0.079221 -0.25369 -0.28707 -0.16496 -0.44239 0.31417 -0.14619 -0.42242 0 -0.28615 -0.052668 -0.38088 -0.61324 -0.24659 -0.032197 -0.0039959 -0.76577 -0.27086 -0.50635 0.058088 -0.17984 -0.176 -0.36588 -0.0033052 -0.08824 0.037567 -0.0018717 -0.17669 -0.12837 -0.11369 -0.26792 -0.24125 0.56311 -0.0023742 -0.52521 -0.30081 -0.54582 -0.46885 -0.11349 -0.12861 -0.001953 -0.2639 0.07313 -0.1192 -0.019474 -0.22272 0.60497 -0.18609 -0.35291 -0.22723 -0.098307 -0.6867 -0.29997 -0.17135 0.058642 0.054693 -0.54515 -0.65441 -0.31182 -0.42927 -0.13783 -0.36986 -0.027418 0 -0.45406 -0.42646 0.37289 -0.37001 -0.39113 -0.2117 -0.50327 -0.30744 0.075215 -0.28877 0.75267 -0.88527 0.020213 0.0058228 -0.62209 -0.11651 -0.24114 -0.14587 -0.34462 -0.2941 0.017445 -0.34348 -0.58105 0 -0.2038 -0.49897 -0.72627 -0.1705 -0.1404 -0.12544 Deletion Peak 12 - CN values 5q23.1 chr5:44815307-181538259(probes 234080:267641) chr5:118344575-118571194(probes 250121:250163) chr5:51600801-137691983(probes 234425:255251) 0.0015548 0.21061 Actual Copy Change Given -0.43991 -0.15223 -0.30247 -0.21552 -0.50693 -0.31966 -0.13391 -0.61926 -0.20969 0.2112 -0.2822 -0.047364 -0.25369 -0.28707 -0.16496 -0.43087 0.31417 -0.14619 -0.448 0 -0.28615 -0.052668 -0.37223 -0.61324 -0.11705 -0.032197 -0.012393 -0.7625 0.027081 -0.50893 0.058088 -0.18357 -0.19279 -0.35693 -0.0033052 -0.08824 -0.29259 -0.0018717 -0.18478 -0.13404 -0.11369 -0.26792 -0.25898 -0.26206 -0.0023742 -0.0020382 -0.30312 -0.52628 -0.47564 -0.11349 -0.12861 -0.001953 -0.46725 0.07313 -0.1192 -0.005972 -0.22272 -0.16742 -0.18609 -0.35291 -0.22994 -0.098307 -0.68444 -0.29997 -0.17135 0.0060054 0.10015 -0.53753 -0.67199 -0.31182 -0.4368 -0.13783 -0.39091 0.025705 0 -0.45406 -0.44665 -0.15285 -0.39195 -0.37523 -0.2117 -0.50327 -0.019708 0.051465 -0.28877 -0.41898 -0.49919 0.020213 -0.011305 -0.62209 -0.11651 0.016606 -0.14587 -0.34462 -0.32576 0.017445 -0.39212 -0.13257 0 -0.2038 0.021786 -0.73312 -0.1705 -0.1404 -0.035314 Deletion Peak 13 - CN values 5q35.2 chr5:51393999-181538259(probes 234382:267641) chr5:174029368-174125584(probes 265498:265522) chr5:166304341-181538259(probes 263652:267641) 0.0093696 0.20414 Actual Copy Change Given -0.43991 -0.17271 -0.30247 -0.21998 -0.50693 -0.34262 -0.13391 -0.59462 -0.1987 -0.23237 -0.30238 -0.10381 -0.25369 -0.28707 -0.16496 -0.50214 -0.26822 -0.14619 -0.4861 0 -0.28615 -0.052668 -0.32222 -0.61324 -0.11705 -0.032197 -0.012393 -0.80494 0.027081 -0.54686 0.058088 -0.20334 -0.19279 -0.35287 -0.13756 -0.08824 -0.3088 -0.0018717 -0.18817 -0.13404 -0.11369 -0.26792 -0.25898 -0.26399 -0.0023742 -0.053316 0.0088546 -0.55974 -0.15486 -0.11349 -0.094312 -0.001953 -0.46725 0.07313 -0.1192 -0.51529 -0.25285 -0.16742 -0.18609 -0.37113 -0.24474 -0.098307 -0.70902 -0.29997 -0.17135 0.0060054 0.0065441 -0.57458 -0.6877 -0.31182 -0.19154 -0.13783 -0.39091 0.016178 0 -0.47188 -0.4732 0.82173 -0.47838 -0.40017 -0.24382 -0.50886 -0.034667 0.071523 -0.28687 -0.43938 -0.34872 0.60192 -0.0080391 -0.63687 -0.11651 0.016606 -0.14587 -0.0016266 -0.92193 0.017445 -0.3499 0.20353 0 -0.2038 -0.026696 -0.7784 -0.1705 -0.1404 -0.096287 Deletion Peak 14 - CN values 6p12.3 chr6:1-51618701(probes 267642:281148) chr6:49959990-49969989(probes 280686:280693) chr6:49952590-49975288(probes 280676:280704) 0.11429 0.11688 Actual Copy Change Given -0.47076 0 -0.30612 -0.17768 0.15997 0.010864 0.013004 0.5888 0.086115 -0.14204 0 0.51959 0.0073159 0.056157 0.051044 0.13097 0.12099 -0.0033785 0.034637 0.0060475 -0.15178 0.012067 0.3411 0.23429 0.10762 -0.016437 0.0061449 0.16866 -0.26684 0.023504 -0.016981 -0.17494 -0.1875 0.76186 0.15121 0.066891 0.012646 -0.0025475 -0.76804 -0.083256 0.04544 -0.0030912 0.0077855 0.3451 -0.058261 0.43607 0.40629 0.029484 0.49797 0.069968 0.14367 0.20968 1.7441 -0.010312 0.036768 0.18139 0.41663 0.23379 0.050653 0.004839 0.14337 0.020302 -0.68892 -0.070601 0 -0.20875 0.037979 0.79271 0.03648 0.0014445 -0.0088556 -0.00073301 0.0063477 0.14735 0.03994 0.13348 -0.40437 -0.02112 1.1622 0.096792 0.42716 0.012533 -0.67998 0.027384 0.0084463 0.37994 0.22231 0.027272 0.061847 0.033923 -0.06765 0 0.014371 0.0071559 -1.113 -0.033023 0.31288 -0.14243 0.13512 1.1584 -0.52045 -0.79771 -0.16513 0.016741 -0.76238 Deletion Peak 15 - CN values 6q22.1 chr6:93419398-117675473(probes 291376:297584) chr6:115632940-115655658(probes 296904:296917) chr6:98102707-117630401(probes 292314:297579) 0.0015334 0.0015524 Actual Copy Change Given -0.080349 0 -0.25015 -0.09698 0.0091405 0.010864 0.013004 -0.018429 0.041335 0 0 -0.055272 0.00069536 -0.11184 0.051044 0.10725 -0.074981 -0.0033785 -0.37236 0.0060475 -0.15178 0.012067 -0.30263 0.23429 -0.039184 -0.016437 -0.25705 0.18953 0 0.018481 -0.016981 -0.1761 -0.1875 0.25805 -0.087608 0.066891 -0.32856 -0.0025475 0.013315 -0.083256 0.04544 -0.23695 0.0077855 0.33301 -0.058261 0.43605 -0.29852 0.53116 -0.17934 -0.1134 0.14367 -0.2218 -0.502 -0.010312 0.11626 0.18139 0.076375 -0.17169 0.050653 0 0.14337 0.020302 -0.68483 -0.070601 0 -0.21095 -0.3694 0.56078 0.084008 0.0014445 -0.43384 -0.043535 0.0063477 0.15633 -0.10403 -0.38968 -0.24064 -0.16036 -0.43892 0.089085 -0.038967 0.003252 -0.40125 0.014371 -0.0076179 -0.06922 0.36651 -0.10338 0.02682 0.033923 -0.06765 0 -0.014901 0.0071559 -1.1974 -0.033023 -0.34742 0.018649 -0.32574 0 -0.46911 0.08206 -0.062182 0.016741 -0.075909 Deletion Peak 16 - CN values 7q36.3 chr7:108454740-159345973(probes 336305:348963) chr7:158515568-159345973(probes 348950:348963) chr7:156928650-159345973(probes 348516:348963) 0.11816 0.12127 Actual Copy Change Given 0.32503 0.14488 0.30346 0.0798 0.0065144 -0.25759 -0.0063725 0.50227 0.14869 -0.11889 0.00041442 0.64452 -0.27858 0.027651 0.056198 -0.5088 0.36934 -0.20143 0.03971 0.0087893 0.30178 0.0076558 0.29144 -0.13702 0.14431 0.037622 0 -0.8843 0.014703 -0.039136 0.13393 0.058607 -0.18953 -0.34757 0.11746 0.2002 -0.0025898 -0.40418 0.044172 0.12278 -0.11069 0.01801 0.26623 0.012546 0.014986 0.47028 0.64796 -0.027066 -0.13672 0 -0.077746 -0.0080402 -0.045699 -0.026424 -0.11153 0 0.25151 0.38326 0.10103 -0.042349 0.010289 0.11689 0.041941 -0.12262 -0.31519 0.046815 0.045514 1.0581 -0.040235 -0.32579 0.066499 0.057005 0.0039136 0.25736 -0.2262 0.16254 0.73526 0.0048923 0 -0.66862 0.15357 0.19398 -0.71518 0.033207 -0.29051 0.1914 0.19697 0.70285 -0.014412 -0.0054919 0.032156 -0.022822 0.094089 0.0010435 0.29145 0.029037 -0.025845 -0.12908 -0.050242 0.0071143 -0.59257 -0.75294 0.13135 -0.067808 -0.019878 Deletion Peak 17 - CN values 8p23.2 chr8:2129481-6406417(probes 349333:349745) chr8:2922005-5009401(probes 349341:349682) chr8:1-37262051(probes 348964:357064) 3.4264e-15 3.4264e-15 Actual Copy Change Given -0.23047 -0.17839 -0.3829 -0.30491 0.0016775 0.010209 -0.018249 -0.63332 1.0684 -0.46202 -0.023565 -0.81086 -0.26185 -0.29102 -0.16613 -0.49313 -0.76761 0.12272 -0.54387 -0.00089124 0.0077104 -0.01022 -0.31627 -0.081815 -0.35439 -0.081878 -0.062925 -0.78166 -0.26887 -0.55037 0.056978 -0.20179 -0.19817 -0.35738 0.14831 -0.16204 -0.63338 -0.38344 -0.17014 -0.14795 -0.11054 -0.27002 -0.31007 -0.57041 0.010759 -0.33847 -0.66661 -0.61089 0.24828 -0.12131 -0.34753 0.20231 -0.93409 -0.0070954 -0.14852 -0.307 -0.29911 -0.40817 -0.20258 -0.36972 -0.16405 -0.12379 -0.70406 -0.34954 0.031219 -0.23676 -0.44198 -1.1549 -0.67995 -0.33963 -0.17754 -0.109 -0.40209 -0.32415 0.69483 -0.77919 -0.44552 -0.13747 -0.40749 -0.0044494 -0.29205 -0.071821 -0.7292 -0.16864 -0.045863 -0.10382 -0.46521 0.27458 -0.24905 -0.66649 -0.062445 -0.48269 -0.26138 -0.38429 -0.36713 -0.11789 -0.76868 0.14968 -0.63834 -0.016164 -0.56577 0.032608 -0.01316 -0.15179 -0.10374 Deletion Peak 18 - CN values 9p21.3 chr9:21862204-21997447(probes 388290:388330) chr9:21966683-21968982(probes 388319:388320) chr9:1-32092706(probes 383829:390437) 2.5114e-40 2.5114e-40 Actual Copy Change Given -1.2272 -0.47607 -0.47937 -0.19534 -1.0251 -0.33003 -0.29225 -1.1767 -0.19717 -0.1354 0.49632 -1.2929 0.0048758 -0.28886 -0.16933 -0.41441 -0.49306 -0.43702 -0.90904 -0.0027757 0 -0.061606 -0.35795 -0.31674 0.12134 -0.0016486 -0.49947 0.68412 -0.2475 -1.0771 -0.08411 -0.57174 -0.59219 -1.1189 -0.1525 -0.077781 -0.63405 -0.37444 -0.38876 -0.38801 -0.11247 0.0022784 -0.25727 -1.0245 0.018077 -0.52193 -0.31553 -0.0046312 -0.48333 0.086663 -0.21491 -0.65372 -1.2929 -0.020849 -0.41994 -0.73852 -0.047899 -0.43985 -0.46444 0.15579 -0.76879 -0.098423 -1.2929 -0.29374 -0.31318 -0.20349 -0.35814 -0.56371 -1.2929 -0.67656 -0.4617 -0.20065 -0.00065753 -0.59823 -0.013185 -0.3591 -0.41449 -0.49632 0.39244 -1.0483 -0.6566 -1.0359 -0.70965 -0.40072 -0.25511 -0.42933 -0.34202 0.15855 -0.35438 -0.63147 -0.12364 -0.20925 -0.13838 0.0017986 -0.31673 -0.075873 -0.60721 -0.15033 -1.2927 -0.72494 -0.51999 0.034571 -0.038914 -0.14558 -0.40372 Deletion Peak 19 - CN values 10q23.31 chr10:87838309-88274557(probes 435827:435935) chr10:87862622-87985482(probes 435837:435890) chr10:79866032-108926237(probes 434049:442650) 3.7693e-06 3.5381e-06 Actual Copy Change Given -0.83291 -0.14258 -0.30434 -0.23355 0 -0.32728 0.0039924 -0.0096661 -0.2333 -0.18381 -0.2882 -0.072583 -0.50349 -0.066543 -0.00019177 -0.37788 -0.018825 -0.00059922 -0.44476 -0.015532 -0.29325 -0.030028 -0.29475 -0.021302 -0.065856 -0.026509 -0.010431 -0.28825 -0.022379 0 -0.097804 -0.19707 -0.024961 -0.35471 0.029281 -0.14441 -0.29588 0.0021781 -0.0081216 0.11034 -0.26102 -0.58271 -0.26805 -0.1468 -0.069236 -0.051097 -0.31427 -0.54508 -0.20525 -0.025591 -0.03944 -0.22946 -0.46332 -0.0052579 0.065596 -0.029917 -0.095894 0.2113 -0.14845 -0.35319 -0.24993 -0.32966 -1.2929 0.1517 -0.32244 -0.20811 0.021609 -0.015322 0.054964 0.0050486 -0.1911 -0.13555 -0.39987 -0.028968 -0.00083647 0.12885 -0.030938 -0.017182 -0.40524 -0.34848 -0.012958 0.0025922 -1.2929 -0.11649 -0.24317 -1.2115 -0.33243 -0.11212 0.039169 -0.013136 0.016346 -0.25486 -0.14706 -0.0026417 -0.32282 -0.028497 0.42076 -0.15398 -0.032736 -0.26781 -0.12658 -0.97902 -0.18674 -0.056026 -0.058666 Deletion Peak 20 - CN values 11p15.4 chr11:3164691-3227879(probes 450657:450677) chr11:3217781-3218980(probes 450669:450670) chr11:1-5821678(probes 449317:451407) 0.00072302 0.00076036 Actual Copy Change Given 0.21849 0.0040704 -0.24828 -0.22537 -0.5443 0 -0.14264 -0.58947 0.17088 -0.2379 0.27654 -0.069891 -0.25709 -0.29548 -0.0018245 -0.48657 -0.54564 -0.14785 -1.2929 0.0066705 -0.11998 -0.012203 -0.28077 -0.34116 -0.067311 0.04488 -0.015075 -0.79317 -0.063821 0.0078807 -0.00036795 -0.1901 -0.19477 -0.3234 0.055561 -0.010567 0.027927 0.0088615 -0.0060561 -0.13856 -0.035328 -0.27077 -0.0073408 0.035634 0.0042643 -0.51754 -0.31708 -0.026382 -0.30663 0.024476 -0.08539 -0.22567 -0.04631 0.0091003 -0.006118 -0.2537 -0.040314 -0.089526 -0.1859 -0.36378 -0.1095 0.12284 0.033229 -0.086472 -0.3167 -0.05988 -0.12207 -1.2929 -0.65481 -0.34066 -0.29296 -0.006277 -0.0042671 0.13708 0.0047169 0.16087 -0.45118 0.0080555 -0.072413 0.013712 0.024136 -0.07753 -0.0039157 0.079551 -0.27094 -0.055986 -0.28744 0.0036157 0.12432 -0.62981 0.11922 -0.022889 0.1606 0.0073492 0.21745 0.013286 -0.35768 0.15038 -0.37585 -0.19499 -0.53364 -0.33332 0.002717 0.009348 -0.44268 Deletion Peak 21 - CN values 11q22.3 chr11:90223009-135086622(probes 476092:487772) chr11:103890180-104177302(probes 479275:479352) chr11:104036720-104037419(probes 479314:479315) 0.045791 0.043877 Actual Copy Change Given 0.18302 -0.019393 -0.30928 -0.20729 0.0045306 0 -0.0082916 -0.0055099 0.14732 -0.13409 0.27088 -0.03991 -0.0022502 0.15152 -0.0018245 -0.40061 -0.50085 -0.00087072 -0.0072395 0.0066705 -0.11998 0 0.14666 -0.32545 -0.021702 0.04488 -0.015075 0.16424 -0.063821 -0.00031945 0.112 -0.19433 -0.022099 0.41435 0.055561 -0.010567 0.0266 -0.37882 0.011822 -0.0015843 -0.035328 0.0021439 -0.0073408 0.035634 0.0042643 -0.031825 -0.33472 -0.23846 0.32647 -0.12918 0.3823 0.20745 -0.28359 -0.07914 -0.14654 0.0014701 -0.02507 0 0.12962 -0.36416 -0.018175 -0.10999 -0.54325 -0.073566 0.022655 -0.05988 0.057082 -0.068085 0.101 0.0073268 -0.12302 0.28974 -0.0042671 -0.19565 0.13576 -0.046017 0.37229 -0.012135 -0.02485 0.0038834 -0.14873 -0.035978 -0.012425 0.011433 0.079206 -0.43578 0.34221 0.38212 0.5691 0.016108 0.11922 -0.022889 -0.055549 -0.35848 -0.32876 0.013286 0.14891 -0.15991 -0.1767 -0.19731 -0.54493 -0.73175 -0.18668 0.009348 -0.3306 Deletion Peak 22 - CN values 13q11 chr13:1-18868622(probes 526603:526856) chr13:18047510-18335706(probes 526839:526840) chr13:18031829-18353428(probes 526834:526844) 0.00072302 0.0010275 Actual Copy Change Given -0.046063 -0.14957 0.046787 -0.23528 -0.51244 -0.31815 -0.1372 -0.58126 -0.24788 -0.41808 -0.56358 -0.1477 -0.2512 0.0094357 -0.16328 -0.46292 -0.16829 -0.16017 -0.91859 -0.018072 -0.0094085 -0.040336 -0.17449 -0.34887 -0.065306 -0.077428 -0.022914 -0.77515 -0.26311 -0.54865 -0.023537 -0.38056 -0.050279 0.10532 -0.063623 -0.060365 0.015418 -0.43201 -0.16599 -0.019352 -0.14106 -0.2798 -0.25188 -0.17712 -0.068919 -0.0028111 -0.32654 -0.19552 -0.16533 -0.092903 -0.073384 -0.010596 -0.17725 -0.026198 0.58533 -0.2697 -0.075363 -0.17249 -0.15533 -0.91247 -0.24029 0.069907 -0.70477 -0.026397 -0.32931 0 -0.38207 -0.58555 0.24839 -0.33171 -0.43801 -0.12729 -0.39239 0.11458 -0.50659 -0.37729 -0.42161 -0.14928 -0.34869 -0.27473 -0.27703 -0.010348 0.66357 -0.094112 -0.32933 -0.47526 0.1614 -0.11189 -0.043712 -0.15559 -0.13018 0.047908 -0.13716 -0.33016 0.12397 -0.069741 0.64532 -0.14666 0.41001 -0.21933 -0.38563 0.072643 -0.17669 -0.067715 -0.17292 Deletion Peak 23 - CN values 13q31.2 chr13:86933577-87623081(probes 542419:542563) chr13:87443843-87670971(probes 542500:542574) chr13:87003353-88420471(probes 542433:542770) 1.4891e-06 1.7697e-06 Actual Copy Change Given -0.089684 -0.14957 0.046787 -0.21397 -0.51244 0.020794 0.0036622 -0.60807 -0.25613 -0.49231 -0.28848 0.49078 -0.0027988 0.0094357 -0.16328 -0.45481 -0.045581 -0.010067 -0.45323 -0.018072 -0.0094085 -0.040336 -0.034753 -0.34896 -0.065306 -0.077428 -0.037659 -0.7591 -0.26311 -0.041553 -0.023537 -0.40064 -0.050279 -1.1409 -0.063623 -0.060365 0.0071925 -0.0047447 -0.14832 -0.019352 -0.14106 -0.2798 -0.25188 -0.50352 -0.068919 -0.01328 0.074977 3.0708 0.60081 -0.092903 -0.073384 -0.010596 -0.4305 -0.026198 -0.080397 -0.2697 -0.075363 -0.17584 -0.15533 -0.35442 0.061919 -0.13535 0.00039778 0.14209 -0.019913 -0.20519 -0.31765 -1.1426 -0.63183 -0.34683 -0.44705 -0.12729 -0.39239 0.13427 -0.084355 -0.14704 -0.42776 -0.30618 -0.36568 -0.50888 -0.24961 -0.0081251 -0.70066 -0.12618 -0.026225 -0.43908 -0.13453 -0.11189 0.3322 -0.64362 -0.13018 0.047908 -0.13716 -0.0091157 -0.45999 -0.069741 -0.14254 -0.11942 -0.42124 -0.36562 -0.55055 -0.73027 -0.1781 -0.067715 -0.21925 Deletion Peak 24 - CN values 14q21.2 chr14:45252277-46503538(probes 555472:555693) chr14:46048116-46503538(probes 555585:555693) chr14:46217811-46234023(probes 555640:555641) 0.086683 0.087151 Actual Copy Change Given 0.1581 0.19872 -0.30247 -0.23007 -0.50789 -0.31123 0.014696 -0.058051 0.41594 0.42122 0.41799 1.2571 -0.22121 -0.28796 -0.057705 0.13653 -0.10722 0.27262 -0.050724 -0.011878 -0.28084 -0.044592 -0.30071 0.31968 0.3579 0.043933 0.88278 -0.34747 -0.23458 0.0097086 0.07885 0.25204 0.005241 -0.34699 0.034503 -0.14568 0.34962 -0.26187 -0.16346 0.10748 -0.10842 0.0016965 0.27295 -0.06746 0.0094842 0.00082863 -0.30377 -0.54682 0.19381 0.033616 0.12223 0.21575 0.34652 -0.002376 -0.13562 -0.017206 -0.13554 -0.17363 -0.22665 -0.35032 -0.18048 0.03285 0.015681 0 -0.06903 0.036449 -0.36953 0.044796 0.036989 -0.33776 0.31576 0.15386 0.009906 -0.045936 0.38146 0.67042 0.4079 -0.042887 -0.36796 0.081929 -0.18502 -0.4438 0.087402 -0.18949 0.2746 -0.45997 0.12986 -0.063741 -0.060069 -0.62751 0.26702 -0.04015 -0.0287 0.0075674 -0.45811 0.014888 0.063344 0.50634 0.46853 -0.10511 0.56532 -0.4721 -0.13264 0.11556 -0.20874 Deletion Peak 25 - CN values 15q21.3 chr15:53761150-55065845(probes 583550:583901) chr15:54012472-54630054(probes 583590:583818) chr15:54392672-54393271(probes 583705:583706) 0.045639 0.043877 Actual Copy Change Given -0.03582 -0.01249 0.0082222 -0.017617 -0.20912 -0.048686 -0.0071155 0.011748 0 0.30936 -0.27329 -0.019148 0.0119 -0.070018 -0.04778 -0.49047 0 0.14355 -0.40805 -0.012807 -0.011985 0.0063612 0.018166 0.28367 0.11464 0.034169 0.2481 -0.76803 -0.26573 0.020997 -0.092092 -0.0042685 0.0083949 -0.66768 -0.04569 0.00065996 -0.28892 -0.088255 -0.0059858 0.13187 -0.037289 0.018106 0.043538 -0.029426 0 0.49212 -0.98005 0.0060464 -0.29158 -0.11408 -0.056469 0.20757 -0.042752 0.0056108 0.0090856 -0.027439 -0.092804 0.092397 -0.006645 0.0043291 0.021774 -0.0036032 -0.67391 0.043545 -0.049479 0.039872 0 -0.55966 0.049571 -0.0045615 0 -0.027709 0 -0.20458 -0.48112 -0.27594 -0.4131 -0.067302 0.36519 -0.27979 0.010893 0.0058014 -0.68429 -0.12287 0 0.37456 0.11545 -0.13157 -0.093038 -0.61929 -0.075017 -0.031392 -0.13737 -0.34548 0 0.013933 -0.34304 -0.12432 0.089744 -0.34783 -0.085609 0.050558 -0.19015 0.011132 0.53396 Deletion Peak 26 - CN values 16p13.3 chr16:1-26031661(probes 598150:605061) chr16:980974-997172(probes 598401:598414) chr16:983575-984672(probes 598408:598409) 0.13671 0.13554 Actual Copy Change Given -0.033307 0.12811 0.012935 -0.071653 -0.17574 -0.060265 -0.22003 -0.56985 -0.22376 -0.2368 -0.0058714 0.70213 -0.0042055 0.074905 0.040937 -0.50819 0.22137 -0.004251 -0.0038252 -0.010837 -0.092138 0.0038392 -0.24641 -0.32637 -0.074812 -0.010601 -0.0018937 -0.39477 0.029948 -0.025367 0.033658 -0.18212 0.0039797 0.073381 -0.11164 0.078666 -0.04227 0.022113 0.017116 -0.010363 0.0064591 -0.1778 0.25838 -0.49876 -0.0031307 -0.39646 -0.28298 -0.0097118 -0.11907 -0.12432 -0.046291 0.15489 -0.031412 0.0012546 -0.011863 0.15497 0.0027465 -0.16608 -0.19892 0.0083872 0.0041292 0.11511 -0.7024 -0.088224 -0.28656 -0.0039573 0.017049 -0.070542 -0.029279 0.020205 0.16041 0.0072886 -0.015518 0.11596 0.47974 -0.12756 0 0.23832 -0.049392 -0.1155 -0.050414 0 0.06332 -0.013484 0.012427 -0.023182 0.32122 0.033422 0.021771 -0.63272 0.043593 0.19258 -0.092195 -0.0059115 -0.31205 0.016564 -0.057817 0.50807 0.027402 -0.18218 -0.13494 0.0064639 -0.18925 -0.15 0.13844 Deletion Peak 27 - CN values 16q21 chr16:65167689-66371798(probes 612239:612417) chr16:65279528-65589622(probes 612254:612326) chr16:65362940-65371788(probes 612291:612292) 0.011093 0.028815 Actual Copy Change Given 2.5384 0.12811 0.012935 -0.22749 -0.529 -0.0031836 0.0086336 0.01956 -0.22551 0.41574 -0.27037 1.4732 -0.25882 0.013636 -0.0030941 -0.47971 0.54308 -0.004251 -0.4294 -0.010837 -0.24736 0.0038392 0.26715 -0.32506 -0.07423 -0.010601 -0.0018937 -0.43858 0.029948 -0.025126 -0.053619 0.1644 0.0039797 0.01859 -0.11164 0.25969 -0.26017 0.031974 -0.040844 -0.010363 0 -0.2569 0.24923 -0.28336 -0.0031307 0.095971 -0.31001 -0.5573 0.13747 0.10411 0.65367 0.15489 0.043444 0.0012546 -0.15455 0.93696 0.0027465 -0.087258 -0.13799 -0.33966 0.026087 -0.11546 -0.69207 -0.088224 0.01011 -0.0039573 0.052694 -0.024572 -0.00094996 0.020205 0.17914 0.0072886 -0.40575 -0.19746 0.018539 -0.12756 0 0.21787 -0.38269 -0.13361 -0.041756 -0.52708 0.065568 -0.1524 0.0019593 -0.21997 -0.16134 -0.1554 -0.052126 -0.34009 0.043593 0.19258 -0.092195 -0.0059115 -0.3397 0.016564 -0.32277 0.50807 0.027402 -0.18439 0.25876 -0.75241 -0.010997 -0.018587 -0.065385 Deletion Peak 28 - CN values 16q24.2 chr16:76559187-90338345(probes 616438:618975) chr16:87602769-87605068(probes 618652:618661) chr16:77523679-90338345(probes 616651:618975) 0.018643 0.082325 Actual Copy Change Given -0.4357 0.12811 0.30763 -0.26705 -0.048953 -0.0031836 -0.066836 -0.021819 -0.22551 0.41574 -0.26117 -0.046021 -0.25882 0.013636 -0.0030941 -0.53336 -0.20435 -0.16373 -0.94781 -0.010837 -0.24736 0.0038392 0.25753 -0.32506 -0.07423 -0.010601 -0.0018937 -0.43858 0.029948 0.50753 -0.053619 0.1644 -0.16701 0.01859 -0.11164 -0.086908 -0.25141 0.025441 -0.040844 -0.010363 0 -0.23305 0.24923 -0.28336 -0.0031307 0.090002 -0.31001 -0.55412 0.12271 0.10411 -0.33065 0.15489 -0.51413 0.0012546 0.079772 0.4052 0.0027465 -0.066514 -0.13799 -0.32837 0.026087 -0.11546 -0.6995 -0.088224 0.01011 -0.28177 0.3776 -0.11995 -0.087799 0.020205 0.17914 0.0072886 -0.40575 -0.23067 0.044876 -0.12756 0 -0.0544 -0.38269 -0.16253 -0.4658 -0.54636 0.053604 -0.1481 0.0019593 -0.481 0.56568 -0.1554 -0.043484 -0.36172 0.043593 0.19258 -0.092195 -0.0059115 -0.3397 0.016564 -0.28799 0.49589 0.057333 -0.18439 0.23173 -0.81016 -0.24491 -0.018587 -0.35465 Deletion Peak 29 - CN values 17p13.3 chr17:1-16031979(probes 618976:624500) chr17:2049850-2050449(probes 619414:619417) chr17:1-23198134(probes 618976:626591) 2.4855e-08 2.4855e-08 Actual Copy Change Given -0.41091 -0.011601 -0.31107 -0.0025612 -0.022888 -0.3462 -0.14334 -0.59042 -0.26693 -0.21809 -0.2774 1.5005 -0.26473 -0.29645 -0.15639 -0.48178 -0.25722 0.2391 0.069511 0.0021898 -0.044161 -0.020164 0.3896 -0.34039 -0.066757 -0.07006 0.29545 -0.79548 -0.26659 -0.54395 -0.099892 0.1301 -0.19035 -0.34237 0.012832 -0.088282 -0.29849 -0.38577 -0.17351 -0.027429 -0.045416 -0.24017 -0.26539 -0.46638 -0.013835 0.0014144 0.019435 -0.54683 0.5033 0.093992 0 -0.23358 -0.4983 0.060541 -0.15248 -0.27473 -0.23831 -0.17634 -0.096182 -0.34904 -0.25112 -0.11744 -0.70434 0.12668 0.022667 -0.21597 -0.4446 -0.022435 -0.056511 -0.31271 0.083101 -0.12231 -0.40863 -0.24095 -0.49797 -0.4581 -0.4347 -0.035653 -0.36805 -0.29052 -0.25103 -0.067904 -0.70151 -0.1379 0.036231 -0.3944 -0.84385 0.09049 -0.086179 0.028265 -0.12064 -0.2597 -0.13258 -0.35721 -0.34686 -0.046606 -1.2929 0.091643 -0.47474 0.30769 -0.53813 0.04218 -0.2042 0 0.20512 Deletion Peak 30 - CN values 18q12.3 chr18:43277606-44544179(probes 657326:657598) chr18:44322261-44544179(probes 657549:657598) chr18:42765723-80373285(probes 657187:665046) 1.1921e-05 0.00033829 Actual Copy Change Given 0.24537 0.14882 0.4281 0.033205 -0.016977 -0.32975 0.004293 -0.037455 -0.10848 -0.23409 0.48416 -0.058526 0.0057361 -0.2257 0.037429 0.057583 -0.21215 -0.14753 0.41206 -0.010245 0.054598 -0.022566 0.12639 0.60227 -0.066754 -0.078664 -0.021721 0.21566 -0.27343 -0.035234 -0.01919 -0.20489 0.31545 0.072948 -0.12169 -0.08696 -0.3042 -0.38788 -0.011387 -0.072613 0.010944 -0.0091881 0.25047 0.009106 0.0075941 -0.021962 0.014953 1.0858 -0.48359 -0.24293 -0.3172 -0.25661 0.29629 -0.012808 -0.0045905 -0.23948 0.011684 -0.2117 0.073614 -0.0065598 -0.019017 0.13494 -0.70216 -0.052757 -0.32233 -0.21281 -0.39098 -0.56013 -0.68978 -0.019608 0.60588 -0.094983 0.0039025 -0.15941 -0.37617 -0.16206 -0.4341 -0.15612 0.086766 0.07472 0.1815 0.48667 0.057487 -0.051339 -0.009906 -0.03093 -0.045918 -0.20745 -0.14324 -0.64305 -0.10758 -0.26399 -0.031576 -0.35576 0.22738 -0.0655 0.099612 0.079884 0.088624 -0.1852 -0.57707 0.011394 0.021683 -0.083913 -0.083119 Deletion Peak 31 - CN values 18q23 chr18:50187271-80373285(probes 659199:665046) chr18:78979302-79005501(probes 664916:664937) chr18:42765723-80373285(probes 657187:665046) 0.00023544 0.030983 Actual Copy Change Given 0.25009 0.14882 0.4281 0.033205 -0.016977 -0.32975 0.004293 -0.071387 -0.18076 0.062795 0.48416 -0.10965 0.0057361 -0.35432 0.037429 -0.055876 -0.21215 0.1238 0.016113 -0.010245 0.054598 -0.022566 -0.48358 0.60227 -0.066754 -0.078664 -0.021721 0.21566 -0.27343 -0.54531 -0.01919 -0.20489 -0.21305 0.072948 -0.12169 -0.08696 -0.33255 -0.38788 -0.011387 -0.072613 0.010944 -0.0091881 0.25047 0.009106 0.0075941 -0.052707 -0.67224 1.0858 -0.48359 -0.24293 -0.3172 -0.25661 -0.18956 -0.012808 0.16722 -0.23948 0.011684 -0.18828 -0.16209 0.31385 -0.019017 0.13494 -0.70216 -0.052757 -0.32233 -0.048371 -0.39098 -0.55983 -0.69443 -0.019608 -0.44777 -0.094983 0.0039025 -0.013874 -0.26357 -0.16206 -0.4341 -0.15612 -0.65006 0.07472 -0.2774 0.48667 -0.0066599 -0.051339 -0.009906 -0.82117 -0.093168 -0.20745 -0.13732 -0.66045 -0.10758 -0.26399 -0.038921 -0.35576 -0.3548 -0.0655 -0.082744 0.46325 0.088624 -0.1852 -0.5554 0.032677 0.021683 -0.063724 -0.13719 Deletion Peak 32 - CN values 19p13.2 chr19:1-27791982(probes 665047:677687) chr19:6890743-7116260(probes 669008:669009) chr19:6886143-7117460(probes 669000:669011) 0.063814 0.065499 Actual Copy Change Given -0.38842 -0.14737 -0.29826 -0.023891 -0.54888 -0.35977 -0.010326 0.023937 0.2091 -0.14323 -0.28949 -0.0042966 -0.0091757 -0.28585 -0.0081364 -0.0010898 0.16775 -0.15102 0.54203 0.011664 0.20409 -0.011251 -0.28392 0 0.12756 0.006728 0.050374 -0.78248 -0.25994 -0.047997 0.018594 0.16928 -0.1948 -0.32922 -0.13629 -0.14636 -0.61293 -0.0056626 -0.17404 -0.0067334 0.066569 -0.21622 -0.25145 0.017724 0.0049265 0.022164 0.70065 0.036538 -0.30824 0.044133 -0.036054 -0.0047989 -0.50617 0.024606 -0.16156 -0.23383 0 -0.12858 0.059906 -0.029972 0.035489 0.13368 0.012057 -0.10753 -0.30366 0.053631 -0.064988 0.40044 -0.010848 0.051045 0.075104 -0.12082 -0.0127 -0.2048 -0.21998 -0.025417 -0.444 -0.1719 0.24209 -0.28372 0.17472 -0.034607 0.0066088 0.080785 0.025764 -0.034177 -0.027271 -0.082367 -0.030993 -0.62729 -0.11893 -0.048002 0.065314 -0.011936 0.21454 -0.0020967 -0.31715 -0.038459 -0.42388 -0.012755 -0.032987 0.049988 0.18011 -0.077233 0.76783 Deletion Peak 33 - CN values 19q13.32 chr19:36202239-58617616(probes 680626:691753) chr19:46819544-46838248(probes 686246:686247) chr19:45046874-53866037(probes 685136:689645) 0.084371 0.087151 Actual Copy Change Given 0.35377 0.14312 0.24373 -0.051996 -0.54815 0.035273 -0.033151 0.0030012 -0.22279 0.013444 0.24345 -0.018273 -0.27808 0.15538 -0.0081364 0.0033103 -0.50636 -0.018519 0.027092 0.011664 0.23573 -0.011251 0.16549 -0.25641 0.48906 0.006728 0.010439 -0.34091 0.039789 -0.031469 0.018594 0.16928 -0.045043 -0.32502 0.15222 -0.14432 -0.28706 -0.0056626 0.016739 -0.0067334 0.066569 0.031274 0.26719 0.21338 0.0049265 -0.015129 -0.31663 0.52255 0.089691 -0.01797 -0.036054 -0.21288 0.33133 0.024606 0.0013988 0.0085534 -0.24377 -0.077359 0.059906 -0.014071 0.015872 -0.12044 -0.71086 0.2753 0.0029075 -0.20075 -0.40857 -0.081532 -0.66929 -0.00017709 0.075104 0.073659 -0.0127 0.10172 -0.06061 -0.45758 -0.10096 0.1049 0.23655 0.4814 0.17472 -0.049542 -0.60589 0.09126 0.018834 0.37109 -0.042086 -0.069445 0.10136 -0.6144 0.10897 0.38691 0.065314 0.36813 -0.25634 -0.0020967 -0.031711 0.19364 0.28931 -0.18007 -0.51455 -0.76467 0.42888 -0.077233 -0.3749 Deletion Peak 34 - CN values 20q13.33 chr20:34550134-64444167(probes 700038:709448) chr20:62064723-62065022(probes 708515:708518) chr20:62064823-62065022(probes 708517:708518) 0.24784 0.24509 Actual Copy Change Given 0.36875 0.13615 0.35132 3.6569 -0.010554 -0.0036812 0.01285 -0.00054988 0.79907 0.92033 0.5543 -0.057543 0 0.12933 0.097846 -0.018309 0.072596 0.25334 0.018729 -0.0041891 0.017534 0.12866 0.26913 -0.024232 0.33525 0.10811 0.24475 0.41896 -0.0045428 -0.018382 0.068062 0.19202 0 0.089136 0.038893 0.35883 -0.15724 0.030481 0.02822 -0.0054867 0.056122 -0.00665 0.22494 0.17554 0.013047 0.24189 -0.32042 0.95845 0.17241 0.11094 0.1801 0.20389 0.15068 -0.02838 0.074125 0.46025 -0.0022469 0.039166 0.2064 0.34401 0.078179 0.055107 -0.26955 0.71645 0.27343 -0.21686 -0.015309 0.53115 3.6569 0.014345 0.3302 0.052529 -0.0086989 0.2813 0.05168 -0.50444 -0.069209 0.1432 -0.3899 0.52651 -0.28894 0.0019355 -0.71233 0.06655 0.095252 -0.44508 -1.2929 0.011331 0.14108 0.0073346 0.19528 0.19255 0.015146 -0.0086542 -0.31577 0.012052 -1.2929 0.35479 0.3291 -0.18239 0.51246 -0.02343 0.1604 0.28535 -0.37783 Deletion Peak 35 - CN values 21p11.2 chr21:6852736-14109327(probes 709635:709895) chr21:6912379-8238832(probes 709641:709697) chr21:6922319-7282600(probes 709642:709643) 0.15368 0.15589 Actual Copy Change Given -0.43985 -0.15731 0.33537 0.13965 -0.35889 -0.012028 0.00074765 -0.072471 -0.37586 -0.14691 -0.0016298 0.29295 -0.21307 -0.17741 -0.00040091 -0.19495 -0.14824 -0.045968 -0.44242 0.0044084 -0.23221 -0.024662 -0.026607 -0.095061 -0.04944 0.032083 -0.0067288 -0.7744 -0.064167 -0.53136 -0.081137 -0.16269 -0.19297 -0.22887 -0.15139 -0.074978 -0.31372 -0.37962 -0.49555 -0.084447 -0.0084668 -0.001719 -0.25279 -0.12793 0.16936 -0.031235 -0.39362 -0.42924 -0.22567 -0.11341 -0.084263 0.15991 -0.42538 -0.0041153 0.79791 -0.37648 -0.23805 -0.12875 -0.011761 -0.80322 -0.19042 0.00020202 -0.56171 -0.090827 -0.0076626 -0.096828 -0.41966 -0.15548 0.29423 -0.34075 -0.20166 -0.13291 -0.0011914 0.11398 -0.24289 -0.52674 0.062559 -0.11641 -0.34755 -0.045457 -0.21887 -0.0013148 -0.68587 -0.083535 -0.015898 -0.20161 -0.3689 -0.053112 0.099524 -0.54327 -0.0071145 -0.48414 -0.018605 -0.040294 -1.1315 -0.03045 -0.064985 -0.15434 0.11472 -0.010872 -0.74213 -0.44752 -0.089024 -0.065414 -1.1123 Deletion Peak 36 - CN values 21q22.3 chr21:37267534-46709983(probes 715592:718745) chr21:44989297-45005096(probes 718304:718308) chr21:44989297-45074140(probes 718304:718323) 0.063814 0.065499 Actual Copy Change Given -0.43985 -0.15731 -0.31733 0.060944 -0.35889 -0.012028 -0.54569 0.0020401 -0.55868 -0.18443 -0.0030834 -0.00078959 -0.043116 -0.17741 -0.00040091 -0.24853 -0.14824 0.13251 -0.0091545 0.0044084 -0.26463 -0.024662 -0.31458 -0.095061 -0.04944 0.032083 -0.0067288 -0.7744 -0.064167 -1.176 -0.081137 -0.19742 -0.19297 0.014788 -0.15139 -0.074978 -0.31372 -0.37962 0.01182 -0.084447 -0.0084668 -0.001719 -0.27481 -0.072998 -0.0094747 -0.031235 -0.32664 -0.038828 -0.18841 -0.11341 -0.084263 0.15991 -0.47699 -0.0041153 -0.023718 -0.25317 -0.23805 -0.16228 -0.15851 -0.34568 -0.23038 0.00020202 -0.69983 -0.090827 -0.0076626 -0.17267 0.03471 -0.092904 -0.10292 -0.34075 -0.19349 -0.13291 -0.0011914 0.065576 -0.24289 -0.12505 0.062559 -0.38107 -0.38731 -0.28895 -0.21887 -0.021719 -0.69057 -0.032221 -0.56941 -0.42828 -0.044586 -0.053112 -0.093131 -0.64228 -0.0071145 -0.017475 -0.018605 -0.35601 -0.29284 -0.03045 0.75767 -0.15434 0.11472 -0.010872 0.0030097 -0.00046364 -0.47077 -0.065414 -0.073836 Deletion Peak 37 - CN values 22q13.32 chr22:48270279-48781801(probes 729816:729945) chr22:48489173-48757351(probes 729855:729936) chr22:48581916-48585815(probes 729896:729897) 0.11555 0.11688 Actual Copy Change Given 0.031792 0.15313 0.055735 0.20785 -0.036329 -0.28205 -0.14817 -0.58177 -0.14458 -0.024891 -0.0091025 0.74952 -0.025833 0 0.28193 -0.036677 -0.060884 0.12753 -0.45387 0.0068115 0.82867 0.10212 0.64273 0.27495 0.68028 0.13292 0.2711 -0.3205 -0.048086 -0.02689 -0.040262 0.35724 0.52237 1.3381 -0.1118 0.072068 -0.011153 0.068872 0.023082 0.12752 0.10281 0.11488 -0.072577 0 0.0092776 -0.042985 -0.35366 -0.53684 0.30786 -0.016138 0.2609 0.20544 0.45029 0.015662 0.18225 -0.27283 0.29081 -0.42541 -0.070996 0.01822 0.22056 0.24072 0.032483 0.33221 0.28256 0.015039 -0.38047 -0.5876 -0.16527 0.024039 -0.18018 -0.12576 -0.013053 -0.2401 0.27374 0.15282 0.39513 -0.011564 0.72768 0.27313 0.17211 1.0325 -0.27196 -0.084255 0.30532 0.018788 -0.017017 -0.030713 -0.11952 0.01948 0.18367 0.42154 0.10331 -0.0041903 0.78812 0.01535 -0.31008 0.1568 0.42525 -0.036596 -0.077511 -0.79412 -0.041273 0.11232 0.23244 Deletion Peak 38 - CN values Xp21.1 chrX:1-53054082(probes 729990:738962) chrX:30859229-34013927(probes 734521:735017) chrX:32150416-32176662(probes 734770:734771) 0.21263 0.21061 Actual Copy Change Given -0.43197 0.11753 0.041131 -0.24714 -0.014425 -0.00029463 -0.03868 -0.16023 -0.13855 -0.071551 0.28184 -0.072679 -0.035696 -0.080274 0.0062632 0.073128 -0.36335 0.14445 0.42587 -0.0043164 0.32911 0.029959 -0.35674 -0.5863 0.043624 0.039395 0.46235 -0.72165 0.020241 -0.039935 0.030455 0.18348 0.14108 -0.35263 0.15697 -0.094063 0.26279 0.022982 -0.12295 0.10346 0.062323 -0.0016884 -0.26153 0.043517 -0.074735 -0.058051 -0.33109 0.41553 0.54773 0.30717 0.0084955 -0.23844 -0.39852 0.15027 -0.086664 0.16084 0.066879 -0.17504 0.029484 0.37936 0.10572 -0.22024 0 0.45656 0.031505 0.020882 -0.12601 0.50185 0.00080082 -0.033897 -0.4592 -0.024697 0.17535 -0.17502 -0.25933 0.31061 -0.40566 0.083164 0.28513 -0.28221 -0.24757 0.010144 0.08796 0.035436 0.25874 0.29753 -0.33365 0.036564 -0.1161 0.017447 0.10603 0.015901 0.097941 -0.016362 0.10338 -0.03308 0.35954 0.57829 0.22709 0.004918 0.41371 0.037787 -0.04494 -0.13283 -0.44606 Deletion Peak 39 - CN values Xq22.3 chrX:108149812-108773392(probes 747916:748138) chrX:108438184-108773392(probes 748053:748138) chrX:108576163-108577662(probes 748096:748097) 0.0085253 0.0088562 Actual Copy Change Given 0.34754 1.0558 0.69132 -0.029851 -0.022958 -0.00029463 -0.03868 -0.11922 -0.13855 3.6569 1.3553 3.2697 -0.048353 0.077509 0.0062632 -0.9443 0.30403 -0.11609 1.3264 -0.0043164 0.32911 0.029959 -0.29946 -0.60961 0.76704 0.039395 0.46235 -0.73135 0.020241 -1.059 0.030455 0.17322 0.14108 0.35394 0.15697 0.17355 0.26279 0.030884 -0.144 -0.36701 0.048316 -0.0016884 3.6569 0.047245 -0.074735 -0.044703 0.2906 0.4291 0.21246 0.57598 0.44612 -0.23519 0.52328 0.15027 -0.17314 0.14901 0.066879 0.28794 0.038759 0.54706 0.24839 -0.21098 -0.0075979 0.46594 0.023351 0.020882 -0.10962 0.19378 -0.057047 -0.033897 -0.47102 -0.034059 -0.27953 -0.15701 0.38977 0.30968 1.2042 0.083164 0.31494 -0.29223 -0.24757 0.022195 0.086486 0.025944 0.25874 0.28938 0.12403 0.25579 -0.13761 0.017447 0.10603 -0.1864 0.097941 -0.016362 0.19062 -0.03308 0.38585 0.57829 0.33671 0.33886 0.41371 -0.0077275 -0.044943 0.032829 0.72732 Deletion Peak 40 - CN values Yq11.23 chrY:13479852-57227415(probes 758610:760603) chrY:25712762-57227415(probes 760456:760603) chrY:11486563-57227415(probes 758161:760603) 0.00028559 0.00028284 Actual Copy Change Given 0.39152 0.048789 0.5446 -0.4913 -0.92599 -0.059305 -0.24586 -1.1304 -0.30223 0.37306 -0.84151 -1.2929 0.29519 -0.52586 -0.47815 -1.0351 -0.18018 -0.39001 -1.2929 -0.083309 0.56711 3.6569 -0.65557 0.4002 -0.62787 0.087029 -0.041565 -0.31639 1.4968 -0.44456 -0.1895 -0.61508 -0.22361 -0.58541 -0.10913 -0.23796 -0.78433 -0.35972 0.19915 -0.47237 2.0531 -0.50251 -0.69944 -1.0499 -0.2994 -1.0854 -0.75064 -1.2929 1.9485 -0.41626 -0.19089 -0.26361 0.37132 -0.5803 -0.73985 -0.66331 -0.64116 1.0084 -0.46385 0.73629 -0.43457 -0.42917 -1.2929 -0.47907 -0.71893 -0.42496 -0.18227 -1.2929 -1.2929 0.33212 0.4472 -0.043414 -0.18418 0.5164 -1.0051 -1.2929 -0.42499 0.30234 -1.1778 -0.13411 -0.40808 -1.0777 -0.86715 -0.3351 0.18454 -1.2171 -0.79093 -0.37732 -0.63651 0.13331 -0.36222 0.0043881 -0.14956 -0.68771 -0.97717 -0.11048 0.28716 -0.93627 0.11337 0.33127 -1.2929 -0.010336 -0.67985 0.10003 -0.56758