Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold C3L-00081 C3L-00415 C3L-00445 C3L-00568 C3L-00603 C3L-00904 C3L-00923 C3L-00927 C3L-00965 C3L-00993 C3L-01000 C3L-01285 C3L-01455 C3L-01606 C3L-01663 C3L-01838 C3L-01884 C3L-02127 C3L-02130 C3L-02163 C3L-02164 C3L-02168 C3L-02170 C3L-02349 C3L-02358 C3L-02546 C3L-02552 C3L-02619 C3L-02625 C3L-02627 C3L-02629 C3L-02646 C3L-02648 C3L-02649 C3L-02650 C3L-02660 C3L-02665 C3L-02669 C3L-02891 C3L-02951 C3L-02963 C3L-02964 C3L-02968 C3L-02969 C3L-03272 C3L-03678 C3L-03961 C3L-03962 C3L-03963 C3L-03965 C3L-04013 C3L-04014 C3L-04071 C3L-04391 C3N-00211 C3N-00221 C3N-00247 C3N-00497 C3N-00555 C3N-01017 C3N-01020 C3N-01025 C3N-01028 C3N-01194 C3N-01411 C3N-01846 C3N-01892 C3N-01893 C3N-02252 C3N-02283 C3N-02284 C3N-02285 C3N-02288 C3N-02289 C3N-02300 C3N-02339 C3N-02374 C3N-02375 C3N-02425 C3N-02426 C3N-02434 C3N-02435 C3N-02494 C3N-02523 C3N-02575 C3N-02675 C3N-03051 C3N-03072 C3N-03076 C3N-03092 C3N-03093 C3N-03204 C3N-03424 C3N-03425 C3N-03441 C3N-03486 C3N-03662 C3N-03848 C3N-03851 C3N-03875 C3N-03877 C3N-03880 C3N-03882 C3N-03886 C3N-04124 C3N-04127 C3N-04155 C3N-04162 Amplification Peak 1 1q23.3 chr1:161420002-161690000(probes 13102:13111) chr1:161440001-161460000(probes 13105:13107) chr1:161430001-161710000(probes 13103:13113) 0.027882 0.027882 0: t<0.1; 1: 0.10.9 1 0 2 0 0 2 0 0 2 1 0 2 1 0 2 0 0 2 1 0 2 1 0 2 0 2 0 2 2 0 0 1 0 2 1 2 0 2 1 0 2 0 1 1 0 0 0 2 1 1 1 2 1 1 0 2 0 0 0 2 0 2 0 0 0 2 2 2 2 0 2 0 2 1 0 0 0 2 0 0 1 1 1 0 0 2 0 2 2 2 0 0 0 0 1 2 2 0 1 2 2 1 0 2 2 0 2 1 Amplification Peak 2 2p15 chr2:36020001-69600000(probes 25561:28800) chr2:63870001-63910000(probes 28244:28248) chr2:58210001-68729999(probes 27625:28707) 0.019002 0.019002 0: t<0.1; 1: 0.10.9 2 1 2 0 2 0 0 0 1 2 1 2 1 0 1 0 2 1 2 1 2 2 2 2 1 2 0 2 0 0 0 1 1 0 0 2 1 2 1 0 1 0 1 0 1 0 0 1 0 1 0 2 2 2 1 2 0 0 0 2 0 2 1 0 0 2 2 2 2 0 0 0 2 1 0 0 2 2 1 0 2 1 1 0 1 2 0 1 1 0 1 0 1 1 0 0 2 0 1 2 1 1 2 0 1 0 1 1 Amplification Peak 3 2q31.2 chr2:177110001-177370000(probes 38735:38773) chr2:177220001-177230000(probes 38753:38754) chr2:177210001-177339999(probes 38751:38769) 0.11182 0.11182 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 0 0 0 1 1 2 1 0 1 0 0 2 0 1 2 0 0 1 0 2 0 0 0 0 0 0 0 2 0 2 1 0 0 0 1 0 0 1 0 0 2 2 0 2 0 2 0 2 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 2 1 0 1 1 2 2 0 0 1 0 0 2 0 0 1 2 0 1 2 1 2 1 0 2 0 1 2 0 0 0 1 2 0 0 2 Amplification Peak 4 3q26.33 chr3:181620001-182869999(probes 63469:63637) chr3:181770002-182100000(probes 63493:63532) chr3:109950001-198295559(probes 56019:65092) 1.4984e-55 1.4984e-55 0: t<0.1; 1: 0.10.9 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 2 2 2 2 0 2 2 2 2 2 0 2 2 1 2 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 0 0 2 2 1 2 2 2 0 2 2 2 2 1 2 2 2 1 2 2 2 2 0 1 2 2 2 2 2 0 2 2 2 2 0 2 1 2 2 2 2 2 2 2 2 2 2 0 2 2 2 2 Amplification Peak 5 4q12 chr4:52290001-56719999(probes 69874:70382) chr4:55470001-55520000(probes 70240:70245) chr4:52770001-56599999(probes 69927:70369) 0.019002 0.019002 0: t<0.1; 1: 0.10.9 1 1 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 2 0 0 2 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 2 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 2 0 1 2 2 0 0 0 0 Amplification Peak 6 5p15.33 chr5:1-1299999(probes 83239:83253) chr5:1-1289999(probes 83239:83252) chr5:1-1910000(probes 83239:83275) 0.027388 0.23573 0: t<0.1; 1: 0.10.9 2 2 2 2 2 2 2 2 1 2 2 0 2 0 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 2 2 1 2 1 0 1 0 0 2 2 1 2 1 0 0 0 0 2 2 1 1 2 2 2 1 0 2 1 2 2 1 2 0 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 0 2 1 1 2 2 2 2 2 1 2 2 2 1 0 1 1 1 0 2 1 0 1 Amplification Peak 7 5p13.2 chr5:33930002-50839999(probes 86524:87693) chr5:36920001-37010000(probes 86774:86784) chr5:33940001-41360000(probes 86525:87250) 0.010759 0.29139 0: t<0.1; 1: 0.10.9 2 2 2 2 0 2 2 2 1 2 1 0 2 0 2 2 2 2 2 2 2 2 2 1 2 2 2 2 0 2 2 1 2 2 0 1 2 0 2 2 1 2 1 0 0 0 0 2 2 0 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 0 2 2 2 1 2 2 2 1 2 2 0 2 1 1 2 1 0 2 2 2 2 2 2 1 2 1 1 1 1 2 1 1 1 Amplification Peak 8 6p25.3 chr6:1-89999(probes 100591:100600) chr6:1-80000(probes 100591:100599) chr6:1-99999(probes 100591:100602) 0.079981 0.079981 0: t<0.1; 1: 0.10.9 1 2 2 0 1 0 0 0 1 2 0 2 0 0 1 0 0 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 0 2 0 1 0 2 0 0 1 0 0 0 0 1 0 2 2 0 1 2 0 0 1 2 0 0 1 2 0 2 0 1 0 1 0 2 2 0 0 0 1 0 2 2 0 1 1 0 1 1 1 2 1 0 1 2 0 1 1 0 0 2 0 0 2 0 1 2 1 0 0 1 0 0 1 1 Amplification Peak 9 7p22.3 chr7:1410002-1509999(probes 117198:117213) chr7:1440001-1470000(probes 117203:117206) chr7:1410001-1569999(probes 117197:117224) 9.0017e-05 9.0017e-05 0: t<0.1; 1: 0.10.9 2 1 2 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 1 2 2 0 0 2 2 2 2 0 0 2 2 2 1 1 1 1 2 1 1 2 0 2 0 1 0 2 1 2 1 0 2 2 1 1 1 2 0 1 2 2 2 0 1 0 2 0 2 0 0 0 0 2 1 0 2 0 2 1 0 2 0 1 2 1 2 2 1 0 2 2 0 2 2 2 0 2 2 2 2 2 1 0 0 2 2 1 1 Amplification Peak 10 7q21.3 chr7:93400001-97120000(probes 125267:125705) chr7:96470001-96520000(probes 125628:125633) chr7:90550001-100050000(probes 124950:126006) 0.0026129 0.0026129 0: t<0.1; 1: 0.10.9 1 1 2 0 0 0 0 2 0 0 0 2 1 0 1 0 0 2 1 0 2 2 0 2 2 2 0 2 0 0 2 2 0 0 1 2 2 0 0 2 0 0 1 1 0 0 0 2 2 1 0 2 0 0 0 0 0 2 0 2 1 0 0 1 0 2 0 1 0 1 0 0 2 1 0 1 0 1 2 0 0 0 1 0 2 0 2 1 1 2 0 0 1 2 1 0 2 0 1 0 1 2 1 0 1 1 1 1 Amplification Peak 11 8p11.23 chr8:38280002-38700000(probes 135168:135218) chr8:38300001-38360000(probes 135171:135179) chr8:35370002-46570000(probes 134791:135774) 1.851e-22 5.765e-22 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 0 2 2 2 2 0 2 0 2 2 0 1 0 0 0 0 1 2 0 0 2 2 0 0 1 0 0 1 2 1 0 2 1 2 2 2 0 1 2 0 0 2 0 0 1 1 2 1 0 0 0 2 0 2 2 0 0 2 2 1 1 0 2 0 2 0 1 0 0 2 2 1 0 0 1 2 2 2 2 1 1 2 0 2 0 2 2 2 2 2 0 0 2 2 2 2 0 2 2 0 1 Amplification Peak 12 8q11.21 chr8:49200001-49810000(probes 136059:136125) chr8:49710001-49730000(probes 136111:136113) chr8:49100001-49879999(probes 136047:136133) 0.0090234 0.36612 0: t<0.1; 1: 0.10.9 1 2 2 0 0 0 0 0 0 1 2 2 2 2 1 2 0 1 1 0 2 0 0 0 2 2 2 2 0 0 2 0 1 0 1 0 1 0 0 2 0 2 1 0 0 0 0 2 0 2 0 1 2 2 1 0 0 0 1 0 2 0 0 1 2 0 0 1 0 2 2 0 0 0 0 1 2 2 1 1 1 1 1 1 0 0 1 2 2 1 1 0 0 1 2 0 2 2 0 2 0 2 2 0 1 2 0 1 Amplification Peak 13 8q24.21 chr8:126620001-128620000(probes 144266:144516) chr8:127340001-127400000(probes 144357:144364) chr8:99900001-145138636(probes 141464:146056) 7.8182e-10 5.0676e-06 0: t<0.1; 1: 0.10.9 2 2 2 2 0 0 0 2 1 2 2 2 1 2 2 2 2 2 1 1 2 0 0 1 2 2 2 2 2 0 2 1 1 0 1 2 1 2 2 1 2 2 2 0 1 2 0 2 0 2 0 0 2 2 1 1 0 2 1 0 2 2 0 1 1 1 2 1 0 2 2 0 0 0 0 1 2 2 1 2 2 2 2 1 2 0 2 2 2 2 1 0 1 1 1 2 2 2 0 2 2 1 2 0 1 2 0 1 Amplification Peak 14 8q24.3 chr8:142440002-142549999(probes 145854:145868) chr8:142460001-142510000(probes 145857:145862) chr8:99900001-145138636(probes 141464:146056) 1.9316e-08 0.21615 0: t<0.1; 1: 0.10.9 2 2 2 2 0 0 0 2 1 2 2 2 1 2 2 2 2 2 1 1 2 0 0 0 2 2 2 2 2 0 2 0 1 0 1 2 0 0 0 1 2 2 2 0 1 2 2 2 0 1 0 0 0 2 1 0 0 2 1 0 2 2 0 1 0 1 2 1 0 2 2 0 1 2 0 1 2 2 2 2 1 2 0 1 2 2 2 2 2 2 1 0 2 1 2 0 2 2 0 2 2 1 2 1 0 2 2 1 Amplification Peak 15 9p24.3 chr9:1-789999(probes 146057:146062) chr9:1-40000(probes 146057:146061) chr9:1-809999(probes 146057:146064) 0.00018604 0.00018604 0: t<0.1; 1: 0.10.9 0 2 2 2 0 0 0 0 1 1 2 1 2 0 0 0 1 1 1 0 0 2 0 1 1 2 0 2 0 0 0 1 1 2 1 0 0 0 0 2 2 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 0 1 1 0 2 0 0 0 0 1 0 0 2 1 0 0 2 1 2 2 0 0 0 1 2 1 0 0 0 2 1 1 0 1 2 0 0 0 0 0 2 0 0 2 1 0 0 0 1 0 1 1 Amplification Peak 16 9q34.3 chr9:138250002-138394717(probes 157023:157039) chr9:138260001-138290000(probes 157024:157027) chr9:138260001-138394717(probes 157024:157039) 0.01935 0.01935 0: t<0.1; 1: 0.10.9 2 0 2 0 0 0 0 0 0 1 0 1 0 2 1 0 0 1 1 1 2 1 0 2 0 0 2 0 2 0 0 0 0 1 0 2 0 2 1 0 1 0 0 0 0 0 1 2 2 0 1 2 0 0 1 2 0 0 1 0 0 1 1 1 0 2 0 1 2 0 0 0 1 0 2 2 0 1 1 0 1 1 0 2 1 0 0 2 1 0 0 1 0 1 0 0 2 0 1 2 0 0 1 0 1 0 1 1 Amplification Peak 17 11q13.3 chr11:69530002-70740000(probes 176293:176456) chr11:70420001-70450000(probes 176411:176415) chr11:68680001-74910000(probes 176183:176963) 3.6022e-12 3.6022e-12 0: t<0.1; 1: 0.10.9 2 0 0 0 0 0 0 0 0 0 1 2 2 0 1 0 0 2 2 0 2 0 0 0 1 0 2 0 0 0 2 2 1 2 0 0 0 2 0 0 0 0 0 2 0 0 0 0 1 1 1 2 2 2 1 0 2 2 0 0 0 2 0 0 0 0 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 2 0 0 0 0 0 0 2 2 2 0 1 0 0 2 0 0 1 2 0 2 2 2 0 0 0 2 Amplification Peak 18 12p13.33 chr12:40002-790000(probes 183120:183122) chr12:50001-780000(probes 183121:183121) chr12:50001-810000(probes 183121:183124) 0.051972 0.051972 0: t<0.1; 1: 0.10.9 1 2 2 0 0 2 0 0 1 1 1 2 0 0 0 0 0 0 1 0 2 1 0 1 2 2 2 2 2 0 2 1 0 0 2 0 0 0 2 1 1 0 2 0 1 0 0 1 2 1 0 2 2 2 2 1 2 2 2 1 2 0 1 1 1 2 0 2 0 2 0 0 1 1 0 2 2 2 1 2 2 2 0 1 0 2 1 1 1 2 2 0 0 1 0 2 2 0 1 2 2 1 1 1 1 2 0 1 Amplification Peak 19 12q15 chr12:66650001-72370000(probes 189315:189936) chr12:69540001-69600000(probes 189638:189644) chr12:69540001-69630000(probes 189638:189647) 0.19988 0.19988 0: t<0.1; 1: 0.10.9 0 0 2 0 1 0 0 0 0 1 0 2 0 0 1 0 0 0 2 1 0 1 0 2 1 0 2 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 2 0 1 0 0 0 0 2 0 2 2 0 2 0 1 0 2 0 0 2 0 1 1 0 2 0 2 1 2 1 2 1 0 0 0 0 1 0 0 0 0 0 1 2 0 2 0 0 2 0 1 1 0 1 0 0 1 Amplification Peak 20 13p11.2 chr13:16100002-16219999(probes 197607:197626) chr13:16170001-16180000(probes 197618:197619) chr13:16110001-16239999(probes 197608:197630) 0.038947 0.038947 0: t<0.1; 1: 0.10.9 0 1 2 2 0 0 0 2 0 2 0 2 0 2 0 0 0 1 0 0 0 1 0 1 2 2 0 2 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 0 2 0 1 1 2 0 1 0 0 0 0 0 0 0 0 0 0 1 1 2 2 0 0 0 0 1 0 2 0 0 0 0 0 0 0 2 1 1 1 2 0 0 1 1 0 Amplification Peak 21 14q13.3 chr14:36430002-38030000(probes 210661:210868) chr14:37350001-37380000(probes 210787:210790) chr14:37160001-37789999(probes 210758:210838) 0.058946 0.058946 0: t<0.1; 1: 0.10.9 1 1 2 0 0 0 0 0 1 2 2 2 1 0 0 0 0 0 2 0 0 1 0 0 0 2 2 2 0 0 2 2 0 0 0 0 1 0 1 2 0 0 1 0 0 2 0 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 2 2 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 2 2 0 0 0 0 1 2 0 2 1 0 0 1 2 0 Amplification Peak 22 15q26.3 chr15:101940002-101991189(probes 227414:227422) chr15:101950001-101991189(probes 227415:227422) chr15:101940001-101991189(probes 227413:227422) 0.0015499 0.0015499 0: t<0.1; 1: 0.10.9 1 2 2 2 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 1 0 1 0 1 1 2 2 2 2 0 0 0 2 2 0 0 0 0 1 1 2 0 0 1 2 0 0 1 2 0 1 2 1 1 1 0 0 1 1 1 2 1 2 0 0 2 0 1 0 0 0 2 2 0 0 1 1 2 0 1 2 1 0 1 2 2 0 1 2 0 0 0 0 0 0 0 1 0 1 2 0 1 0 0 0 0 2 1 Amplification Peak 23 17q25.3 chr17:81880002-82089999(probes 241816:241845) chr17:81980001-82050000(probes 241831:241838) chr17:81680001-82259999(probes 241788:241853) 5.0505e-05 5.0505e-05 0: t<0.1; 1: 0.10.9 2 2 2 0 0 0 0 0 1 0 0 2 2 2 1 0 1 1 1 0 2 1 0 2 2 2 0 2 2 0 0 2 2 2 0 2 2 0 2 1 1 0 2 1 2 1 1 0 2 2 0 2 1 1 1 2 2 0 1 1 1 1 0 1 1 1 0 0 2 0 0 0 2 2 2 0 1 2 1 0 2 2 1 0 2 0 0 2 0 1 2 0 1 0 1 0 2 0 2 2 2 2 2 1 1 0 0 1 Amplification Peak 24 19p13.3 chr19:1-280000(probes 249184:249196) chr19:1-279999(probes 249184:249195) chr19:1-300000(probes 249184:249198) 0.0010745 0.0010745 0: t<0.1; 1: 0.10.9 1 1 2 2 0 0 0 0 0 1 1 1 0 0 1 0 0 1 2 0 2 2 0 2 1 2 0 2 2 0 0 2 0 1 0 2 0 2 0 0 1 0 0 0 1 0 0 1 2 0 1 2 1 0 1 1 2 0 2 2 1 1 1 1 0 2 1 0 2 0 0 0 2 0 2 2 0 1 0 1 2 1 1 2 0 2 2 2 1 1 0 0 0 0 0 2 2 0 1 2 0 0 1 1 1 0 1 1 Amplification Peak 25 19q13.12 chr19:37260002-37320000(probes 252638:252646) chr19:37280001-37300000(probes 252641:252643) chr19:28180001-40910000(probes 251556:253054) 2.7299e-08 3.0558e-08 0: t<0.1; 1: 0.10.9 1 1 2 2 0 0 0 0 0 1 1 0 2 0 1 0 0 2 2 0 2 1 0 1 0 2 2 2 0 2 0 1 2 0 1 2 2 0 0 0 1 0 1 2 1 0 0 0 1 0 1 2 2 2 0 1 0 0 0 2 2 0 0 1 0 1 0 2 2 0 0 0 2 1 0 1 0 2 0 1 1 2 1 0 2 0 1 1 0 2 1 1 1 2 1 2 2 0 0 2 1 2 2 0 2 0 2 0 Amplification Peak 26 19q13.43 chr19:58360002-58617616(probes 254683:254688) chr19:58370002-58617616(probes 254684:254688) chr19:58370002-58617616(probes 254684:254688) 0.0020838 0.0031238 0: t<0.1; 1: 0.10.9 1 2 2 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 2 2 0 2 0 2 2 2 2 2 0 2 1 0 1 0 0 0 1 0 2 0 2 0 2 0 0 0 2 0 1 2 0 0 1 1 0 0 0 2 2 0 1 0 0 1 2 2 2 0 0 0 2 1 0 2 0 2 1 1 2 2 1 0 0 0 1 0 0 2 0 0 1 0 1 0 2 2 1 2 2 0 0 0 1 0 0 0 Amplification Peak 27 20q11.21 chr20:31300002-32360000(probes 257191:257319) chr20:31890001-31980000(probes 257264:257273) chr20:31250001-35810000(probes 257182:257724) 0.002847 0.002847 0: t<0.1; 1: 0.10.9 1 1 2 0 2 0 0 2 2 2 2 0 1 0 1 0 0 0 2 0 2 2 2 1 2 2 2 2 0 0 2 1 0 1 0 2 0 0 1 2 1 0 1 1 0 0 0 1 1 0 2 2 1 2 1 1 0 2 2 0 1 1 0 1 0 2 0 0 0 2 2 0 2 2 0 1 0 1 2 1 1 2 2 2 0 0 1 2 1 2 2 0 2 1 0 0 2 0 1 2 1 1 1 0 1 2 1 2 Amplification Peak 28 21q21.1 chr21:10330001-18980000(probes 261999:262527) chr21:16130001-16180000(probes 262213:262218) chr21:16130001-16199999(probes 262213:262221) 0.2097 0.2097 0: t<0.1; 1: 0.10.9 0 0 2 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 2 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 2 0 0 1 0 0 2 2 0 0 0 2 0 2 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 2 0 1 0 0 0 0 0 0 1 Amplification Peak 29 22p11.2 chr22:11370002-11510000(probes 266376:266394) chr22:11430001-11450000(probes 266383:266385) chr22:11380001-11470000(probes 266377:266388) 0.15899 0.15899 0: t<0.1; 1: 0.10.9 1 1 2 2 0 0 0 2 0 0 1 2 0 2 0 2 0 1 2 0 0 1 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 2 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 1 0 0 2 1 0 0 1 0 0 0 2 1 1 2 0 0 0 0 1 0 0 0 0 0 1 0 2 0 1 0 1 0 1 0 0 0 2 0 Deletion Peak 1 1p13.3 chr1:100730002-119370000(probes 9984:11858) chr1:101790002-112540000(probes 10104:11122) chr1:89970001-149939999(probes 8842:11922) 1.0152e-07 1.0152e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 1 0 1 0 1 1 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 1 1 0 1 1 0 1 1 0 0 0 0 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 0 1 0 0 0 0 1 1 1 0 1 1 0 1 0 0 1 0 1 0 1 0 1 1 0 0 1 1 0 1 0 0 0 1 0 1 1 1 1 Deletion Peak 2 2q22.1 chr2:140570002-142879999(probes 34733:35041) chr2:140230001-142150000(probes 34685:34965) chr2:140950001-141450000(probes 34788:34865) 5.2359e-05 0.00021111 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 Deletion Peak 3 2q37.1 chr2:208820002-242193529(probes 41945:45392) chr2:232510002-232550000(probes 44447:44451) chr2:212270001-242168382(probes 42318:45388) 0.0034472 0.022005 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 0 1 0 0 1 1 1 1 0 0 1 Deletion Peak 4 3p13 chr3:45790001-89110000(probes 49448:53759) chr3:70940002-71079999(probes 51917:51933) chr3:45880001-93769999(probes 49457:54311) 3.9175e-06 0.0014437 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 Deletion Peak 5 3p11.1 chr3:1-94010000(probes 45393:54318) chr3:89090002-89419999(probes 53759:53793) chr3:45880001-93769999(probes 49457:54311) 0.0023636 0.093069 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 0 1 1 1 1 0 1 0 0 1 0 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 1 1 1 1 1 0 0 0 0 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 1 0 1 1 1 1 1 0 1 1 0 1 0 1 1 0 0 1 0 1 1 1 0 0 1 Deletion Peak 6 4p16.3 chr4:1-9790000(probes 65093:65881) chr4:1290001-1439999(probes 65120:65121) chr4:1-9610000(probes 65093:65864) 0.0034472 0.0034472 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 1 0 1 0 1 0 1 0 1 0 1 0 0 1 0 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 0 0 1 0 0 1 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 1 0 1 0 1 1 0 0 0 1 0 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 Deletion Peak 7 4q35.2 chr4:173310001-190179999(probes 82078:83231) chr4:187840002-190119999(probes 83223:83224) chr4:169670001-190130000(probes 81729:83226) 6.7567e-05 6.7886e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 1 1 1 1 0 1 1 0 1 0 1 1 1 0 1 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 1 0 1 1 0 0 Deletion Peak 8 5q12.1 chr5:58850001-60490000(probes 88572:88765) chr5:58950002-60490000(probes 88585:88765) chr5:59160001-60610000(probes 88607:88778) 2.0295e-05 2.0295e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 1 0 1 0 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 0 Deletion Peak 9 8p23.2 chr8:2130002-6410000(probes 131872:132098) chr8:2880002-5009999(probes 131877:132049) chr8:1-37950000(probes 131743:135113) 5.8018e-28 5.8018e-28 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 Deletion Peak 10 9p21.3 chr9:21860002-22449999(probes 147915:147994) chr9:21990001-22139999(probes 147935:147956) chr9:40001-32100000(probes 146062:148964) 3.0737e-45 3.0737e-45 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 0 1 0 1 0 0 1 0 1 Deletion Peak 11 10q23.31 chr10:87850002-88280000(probes 165220:165273) chr10:87860001-87980000(probes 165221:165236) chr10:87110002-89480000(probes 165176:165390) 7.1958e-06 7.4317e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 0 1 0 0 1 1 1 0 1 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 0 0 1 1 0 1 0 0 0 0 1 0 1 1 1 1 0 Deletion Peak 12 11p15.5 chr11:130002-31269999(probes 169867:173053) chr11:2250001-2330000(probes 170079:170086) chr11:2030001-5849999(probes 170049:170390) 0.042737 0.042434 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 0 0 1 0 1 0 0 1 1 1 0 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 1 Deletion Peak 13 11q21 chr11:74720002-135086622(probes 176944:183111) chr11:95760001-95790000(probes 179153:179158) chr11:95760001-95819999(probes 179153:179161) 0.11733 0.11709 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 1 1 Deletion Peak 14 13q11 chr13:1-18870000(probes 195988:197901) chr13:18190001-18249999(probes 197867:197873) chr13:18050001-18389999(probes 197850:197892) 5.9354e-06 0.003055 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 1 0 1 1 0 0 0 1 0 1 0 1 1 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 1 0 1 0 0 1 0 0 1 1 1 0 1 1 1 1 0 1 1 0 0 1 0 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 1 0 1 0 Deletion Peak 15 13q14.2 chr13:48280002-48500000(probes 200718:200747) chr13:48290002-48500000(probes 200719:200747) chr13:34220001-69889999(probes 199274:202605) 4.4553e-06 6.7886e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 1 1 1 0 1 0 1 1 0 1 0 0 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 0 0 0 1 0 0 1 0 1 1 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 0 1 0 1 1 1 0 1 1 0 1 1 1 0 0 Deletion Peak 16 14q11.2 chr14:1-20069999(probes 207214:209043) chr14:18210001-20050000(probes 209041:209042) chr14:18220001-20069999(probes 209042:209043) 0.037211 0.036857 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 Deletion Peak 17 16q24.2 chr16:76640001-90338345(probes 232995:234103) chr16:88450001-89259999(probes 234080:234082) chr16:88460002-89260000(probes 234082:234083) 0.19446 0.19666 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 Deletion Peak 18 17p13.2 chr17:1-20720000(probes 234104:235826) chr17:4130002-4289999(probes 234402:234409) chr17:120001-23219999(probes 234119:235958) 1.8508e-07 0.00041814 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 0 0 0 0 1 0 1 0 1 0 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 1 0 0 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 1 0 1 0 Deletion Peak 19 17p11.1 chr17:21290002-27129999(probes 235889:236375) chr17:21400001-22740000(probes 235898:235899) chr17:120001-23219999(probes 234119:235958) 8.8998e-08 0.0071392 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 1 0 1 1 1 0 1 1 0 1 0 1 1 0 1 1 1 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 1 1 1 0 1 1 Deletion Peak 20 18q22.1 chr18:39750002-80373285(probes 245420:249183) chr18:65520002-66120000(probes 248105:248106) chr18:60550001-80373285(probes 247579:249183) 0.0053584 0.0053064 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 0 0 1 0 1 0 0 0 1 0 1 0 1 1 1 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 1 1 1 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 Deletion Peak 21 19p13.3 chr19:70001-16650000(probes 249192:250888) chr19:6870002-7119999(probes 249868:249870) chr19:2340001-11469999(probes 249418:250340) 0.0077433 0.0077188 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 1 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 1 1 1 1 1 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 1 0 1 0 0 0 0 1 1 0 Deletion Peak 22 21p11.2 chr21:7820002-8989999(probes 261614:261789) chr21:8200002-8420000(probes 261675:261702) chr21:7870001-8720000(probes 261622:261752) 0.00025533 0.003055 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 1 1 0 0 0 1 0 0 1 0 1 0 1 0 1 0 0 1 0 1 0 0 0 1 1 1 0 1 1 1 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 1 1 0 0 0 0 1 1 0 0 0 1 1 1 1 0 1 1 0 0 0 0 1 0 1 0 1 1 0 0 Deletion Peak 23 21p11.2 chr21:9120002-14110000(probes 261813:262016) chr21:9770001-9830000(probes 261907:261915) chr21:9360001-13990000(probes 261850:262002) 0.0036436 0.098282 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 1 1 0 1 0 1 1 0 1 0 0 1 1 0 1 1 1 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 1 1 1 0 Deletion Peak 24 22p11.2 chr22:10960001-16940000(probes 266316:266861) chr22:11890001-11960000(probes 266455:266467) chr22:11730001-12240000(probes 266430:266514) 0.036634 0.035705 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 1 1 0 0 0 1 0 0 0 0 1 0 1 0 Deletion Peak 25 Xp22.33 chrX:1-3279999(probes 269641:269678) chrX:250001-3249999(probes 269674:269675) chrX:1-3269999(probes 269641:269677) 2.0343e-15 4.9058e-12 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 Deletion Peak 26 Xp21.1 chrX:11110001-55910000(probes 270000:273960) chrX:30840001-34640000(probes 271781:271982) chrX:30090001-34660000(probes 271705:271984) 0.00057554 0.079295 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 Deletion Peak 27 Xq22.3 chrX:108140002-108790000(probes 278090:278161) chrX:108430001-108790000(probes 278132:278161) chrX:108330001-108630000(probes 278117:278159) 0.0017655 0.0065709 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 1 0 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 Deletion Peak 28 Xq28 chrX:154570002-156000000(probes 282129:282140) chrX:155670001-155969999(probes 282133:282134) chrX:155670002-155970000(probes 282134:282135) 3.4088e-25 1.1452e-24 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 Deletion Peak 29 Yq11.23 chrY:9910002-56959204(probes 283199:288079) chrY:24750001-24829999(probes 284840:284848) chrY:11040001-57227415(probes 283329:288107) 1.1758e-14 1.4865e-13 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 Deletion Peak 30 Yq12 chrY:25730002-57227415(probes 284945:288107) chrY:56939339-57227414(probes 288079:288106) chrY:11040001-57227415(probes 283329:288107) 2.6376e-05 0.027561 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 Amplification Peak 1 - CN values 1q23.3 chr1:161420002-161690000(probes 13102:13111) chr1:161440001-161460000(probes 13105:13107) chr1:161430001-161710000(probes 13103:13113) 0.027882 0.027882 Actual Copy Change Given 0.66667 0 1 0 -0.00098644 1 0 0 2.0036 0.39999 0 1.9998 0.5 0 1.3333 0 0 1.6 0.66667 0.0001481 1 0.66667 0 1.6667 -0.5 0.99932 0 1 2 8.2741e-05 0 0.66737 0.0022222 2.0039 0.66667 1.6 0.00039697 1 0.50023 0 2 0.00016834 0.66667 0.52123 -0.011384 0 0 0.99999 0.66667 0.66667 0.66667 1.5 0.66717 0.50055 0 3.3333 -0.00072827 0 -0.00032254 1.3333 0 2.6673 0 0 0.00039739 2 2.5 2 1 0 1 0 1.9891 0.66667 0 0 -0.49841 1.0001 0 0 0.66667 0.39999 0.66635 0 0 1 -0.66667 1.3333 1.3333 0.99999 0.00022781 0.0015167 0 0 0.66667 1 0.99999 0.0013941 0.79999 1.4993 1 0.33333 -0.33333 3.6569 0.99999 0 1.3333 0.39999 Amplification Peak 2 - CN values 2p15 chr2:36020001-69600000(probes 25561:28800) chr2:63870001-63910000(probes 28244:28248) chr2:58210001-68729999(probes 27625:28707) 0.019002 0.019002 Actual Copy Change Given 1.3333 0.66667 1 0 1 0.0001921 0 0 0.66909 2.8 0.66675 1.9998 0.5 0 0.66658 0 2.5 0.79999 3.3333 0.66667 1 2 3.0012 2.3335 0.49869 0.99768 0 2 0 0 6.9561e-05 0.66561 0.66667 0.00121 0 1.6 0.6672 1 0.5 0 0.39999 -0.00054065 0.66642 0.016978 0.39999 0 0 0.5 0 0.66667 0 0.99982 1.3406 1.9965 0.66667 1.3333 0 0 0 1.3322 0 2.6673 0.66667 0 0.00039739 1.6 0.99999 2 1 0 0 0 1.9885 0.66667 0 0 0.99999 0.99999 0.66667 4.9371e-05 3.6569 0.79999 0.66667 0 0.5 1 0 0.66667 0.66618 -0.0017842 0.66667 0.0015167 0.66667 0.66667 0 -0.0011989 0.99739 0 0.79999 0.99821 0.66656 0.33319 1.3333 0.0012777 0.5 0 0.66667 0.39999 Amplification Peak 3 - CN values 2q31.2 chr2:177110001-177370000(probes 38735:38773) chr2:177220001-177230000(probes 38753:38754) chr2:177210001-177339999(probes 38751:38769) 0.11182 0.11182 Actual Copy Change Given 0 0.66667 0 0 0 0 0 0.00031282 -0.66545 0.79883 0.66667 1.9998 0.5 0 0.66667 0 -0.0006847 3.6 0 0.66667 0.99931 0 0 0.33333 0.00026783 0.99932 0.00061278 0 -0.0015284 0 6.9561e-05 0 0 1.3366 0 1.6 0.6672 0 -0.00089868 0 0.39999 -0.00054065 0.00014874 0.52123 0 -0.5 0.99999 0.99999 -0.012722 1.3333 0.00041023 3.6569 0 3.6569 0.66626 0.66667 0 0 0 0.66667 -0.66667 0 0.66667 0 0.00039739 0.39999 0 0.66667 0 0 0 0 1.3254 0.66667 -0.0004771 0.66667 0.5 2 2 4.9371e-05 -0.6664 0.39975 0 0 0.99999 0 0 0.66667 1.3333 0 0.66667 1.0023 0.66561 2 0.66667 0 1.5 0 0.39999 1.4979 -3.6456e-05 0 0 0.33545 2 0 0 1.2 Amplification Peak 4 - CN values 3q26.33 chr3:181620001-182869999(probes 63469:63637) chr3:181770002-182100000(probes 63493:63532) chr3:109950001-198295559(probes 56019:65092) 1.4984e-55 1.4984e-55 Actual Copy Change Given 3.6569 3.3333 3.6569 3.6569 1.3333 0 1 1 1.3364 3.6 2 3.6569 2.5 3 3.3333 2 0.5 3.6569 1.3333 3.6569 1.9987 2.6666 1 3.3333 0.5 2.9989 2 2.9948 2 1 0 3.6569 2.6666 3.6569 2 3.6569 0.00039697 3 0.99999 0.66667 2.8 1 3.6569 0.50436 3.6569 2.5 0.5 3.6569 2.6666 3.6569 2 3.5 2.6633 3.6569 1.3333 3.6569 0.0028156 0 3.3333 3.6569 0.66667 2.6673 2 1.3333 0.00039739 3.6569 3.6569 3.3326 3.6569 0.66667 1 1 3.6569 0.66667 3.4993 1.3333 0.99999 3.6569 0 0.66007 3.6569 1.2 3.6569 3.6569 3 0 2 2.6666 1.3333 2 0 2.003 0.66667 1.3333 3.6569 3.6569 3.6569 1 1.2 3.6569 3.6569 1.6667 3.6569 -0.33181 3.6569 0.99999 3.6569 1.2 Amplification Peak 5 - CN values 4q12 chr4:52290001-56719999(probes 69874:70382) chr4:55470001-55520000(probes 70240:70245) chr4:52770001-56599999(probes 69927:70369) 0.019002 0.019002 Actual Copy Change Given 0.66667 0.66667 0 0.0021527 0 0 -1 1 0.66909 0 -0.66667 0 1.4852 0 0 0 -0.5 -0.79978 3.3333 0 0 2 0 -0.66666 0 0 0 1 -0.99985 -1 0 2.6666 -0.66667 0.0019622 -0.66547 -0.4 -0.6664 1 -0.5 -0.66667 3.6 0 -0.66638 -0.51303 1.2 0 0 -1 0 -0.66667 0 0 -0.66667 0.5 0 -0.67504 -0.0012681 -0.66667 0 -0.6666 -0.66667 3.6569 -0.66667 -0.66667 -0.9998 3.6569 0 0.66667 -1 0 0 0 -0.0054377 0 0 0 -1 -0.5 0.00066856 0 0 0.39999 0.66667 0.0015364 -1 -1 -0.66644 0 2 0 -0.66667 -0.99924 0 0.66667 0 0 -0.5 -0.0014849 -0.4 0.99821 -0.66622 0.33333 3.6569 3.0046 -0.5 -0.5 0 -0.4 Amplification Peak 6 - CN values 5p15.33 chr5:1-1299999(probes 83239:83253) chr5:1-1289999(probes 83239:83252) chr5:1-1910000(probes 83239:83275) 0.027388 0.23573 Actual Copy Change Given 2 2.6673 3.6569 1 1 1 2 3 0.66909 2.4 2 -8.1453e-05 3.6569 0 3.6569 3.6569 0.79472 0.40171 2.6666 2 3 1.3333 3.6569 1.3345 1.5005 3.6569 2 3.6569 0 2 1 0.66667 2.6666 0.66928 0 0.79999 0.00039697 0 1.5 2 0.80225 2 0.66667 0.016978 0 0 0 0.99999 1.3333 0.66667 0.75304 3.6569 1.3333 3.5 0.66667 0 1 0.66667 3.3333 1.3333 0.66667 1.3346 -0.66667 2 0.00039739 3.6569 1.5 2 1 1.3333 1 3 2.5526 2 0.99999 2.0039 0.99999 0.99999 1 3.6569 0.66667 3.6569 0.66667 3.6569 3.6328 0 2 0.66667 0.66667 3 3.6569 1.0023 1.9794 1.3333 0.66667 1 3.5 1 0.39999 -0.0011868 0.33333 0.33333 0.33333 -0.33181 2.5 0.5 0 0.79999 Amplification Peak 7 - CN values 5p13.2 chr5:33930002-50839999(probes 86524:87693) chr5:36920001-37010000(probes 86774:86784) chr5:33940001-41360000(probes 86525:87250) 0.010759 0.29139 Actual Copy Change Given 2 2.6673 3.6569 1 0 1 2 3 0.66909 2.8 0.66667 -8.1453e-05 2 0 3.6569 3.6569 1.0001 1.2 2.6666 1.3333 3 1.3333 3.6569 0.66384 2 2.9989 2 3.6569 0 2 1 0.66667 2 3.6569 -0.0010843 0.79999 2.0008 -0.00075736 1.499 2 0.79999 2 0.66667 0.016978 0 0 0 2.5 1.3333 0 2.6666 0.99999 3.3333 3.5 1.3333 0.66667 1 1.3333 3.6569 0.66667 0.66667 1.332 2.0058 1.3333 0.99912 3.6569 1.5 0.66667 1 1.3333 0.99648 3 0.65942 1.9806 0 2 0.99999 0.99999 0.66667 3.6569 1.3333 3.6569 0.66667 3.6569 3 0 1.9987 0.66667 0.66754 3 0.66667 0.0015167 2.6666 2 3.3333 1 3.6569 2 0.39999 1.9976 0.33333 0.33333 0.66667 0.33545 2 0.5 0.66667 0.79999 Amplification Peak 8 - CN values 6p25.3 chr6:1-89999(probes 100591:100600) chr6:1-80000(probes 100591:100599) chr6:1-99999(probes 100591:100602) 0.079981 0.079981 Actual Copy Change Given 0.66667 2.6666 1 0 0.33333 0 0 0 0.66909 1.6 0 2.4998 0 0 0.66667 0 0 0.79999 0 0 1 0.66667 0 0.66667 0.5 0.99932 0 0 -1 0 0 -0.66667 -0.66667 1.3366 0 0.39999 0.00039697 1 0 -0.66667 0.39999 0 0 -0.48727 -0.4 0.5 -0.5 0.99999 1.3333 -0.66667 0.66667 0.99999 0 0 0.66667 2.6666 0 0 0.66667 1.3333 -1.2929 1.3338 0 0.66667 0.00039739 0.39999 0 1.3333 1 0 0 0 0.65942 0 0.99999 1.3333 0 0.5 0.33333 0 0.66667 0.39999 0.66667 0.99999 0.5 0 0.66667 2 0 0.5 0.66667 0.0015167 0 1.3333 0 0 1.5 0 0.39999 2.4973 0.33327 0 -1 0.66909 0 0 0.66667 0.39999 Amplification Peak 9 - CN values 7p22.3 chr7:1410002-1509999(probes 117198:117213) chr7:1440001-1470000(probes 117203:117206) chr7:1410001-1569999(probes 117197:117224) 9.0017e-05 9.0017e-05 Actual Copy Change Given 1.3333 0.66667 2 0 0 0 0 0 0.65517 0 0.66667 -8.1453e-05 0.5 0 0 0 0 0.39999 -0.66667 0.66667 1 1.3329 0 0 2 0.99932 2 2 0 0 1 2 3.3333 0.66928 0.66667 0.79999 0.6672 1 0.5 0.66667 2 0 1.3333 0.016978 0.79999 -0.5 0.99999 0.5 2 0.66667 0 3.5 1.3333 0.5 0.66667 0.66667 2 0 0.66667 1.3333 1.3333 1.3338 0 0.66667 0.00039739 1.2 0 2 0 -0.66667 0 0 2.654 0.66667 0 1.9963 -0.5 0.99999 0.33333 -0.0018428 1.3333 -0.4 0.66667 0.99999 0.5 1 1.3333 0.66667 -0.66667 2 2 -0.98503 1.3333 1.3333 2 0 0.99999 2 1.1934 0.99821 1.3333 0.33333 -0.66666 0.0018177 0.99999 1.976 0.66667 0.79999 Amplification Peak 10 - CN values 7q21.3 chr7:93400001-97120000(probes 125267:125705) chr7:96470001-96520000(probes 125628:125633) chr7:90550001-100050000(probes 124950:126006) 0.0026129 0.0026129 Actual Copy Change Given 0.66667 0.66681 2 0 0 0 0 1 0.0018201 0 0 1.9998 0.5 0 0.66667 0 0 2.8 0.66667 0 2 1.3313 0 1 1.5 0.99932 0 3.6569 0 -1 1 2.6666 -0.66667 0.00023769 0.66215 3.6569 1.334 0 -0.0041417 1.3333 0 0 0.66544 0.52123 -0.00099538 0 0.00021959 0.99999 1.3333 0.66667 -0.00049676 1.4949 0 0 0 0 0 3.6569 0.00066873 1.3333 0.66667 0.00026197 0.00012488 0.66667 0.00039739 2 0.00031705 0.66667 0 0.66667 -0.0023104 0 1.3257 0.64628 0 0.65982 0 0.5 1.3333 -0.0018428 0 -0.4 0.66667 0 3.5 0 1.3317 0.66667 0.66628 2.5 0 0.0017119 0.66667 1.3333 0.66667 0 2 0 0.39948 -0.0011868 0.33333 1.3333 0.66667 -0.99909 0.5 0.5 0.66667 0.39999 Amplification Peak 11 - CN values 8p11.23 chr8:38280002-38700000(probes 135168:135218) chr8:38300001-38360000(probes 135171:135179) chr8:35370002-46570000(probes 134791:135774) 1.851e-22 5.765e-22 Actual Copy Change Given 0.66667 -0.66667 0 0 0 -9.8624e-05 0 0 2.0036 3.6569 3.6569 3.6569 -0.5 3.6569 -0.66667 3.6569 3.6569 0 0.66667 -0.00034308 0.0047433 0 -1 0.33333 1.5 -0.00045498 -1 3.6569 3 -1 0 0.66667 -0.66667 -0.66536 0.66456 3.6569 0.6672 0 3.6569 0.66667 3.6569 3.6569 3.6569 0.016978 0.39999 3.6569 0.00028571 0 3.6569 -1.2929 -0.66667 0.4986 0.66667 2 0.66667 0 0 -0.66667 3.6569 -0.66667 3.6569 2.0005 -0.66667 -0.66667 2.6676 3.2 0.5 0.66667 -1 3.6569 -1 3.6569 -0.0054377 0.66667 -1 -0.66667 2.5 0.99999 0.66667 -0.66667 -0.67045 0.39999 3.6569 3.6569 0.99999 3.6569 0.66667 0.66667 3.6569 0 3.6569 0.0015167 1.3333 1.3333 3.6569 1 0.99999 0 -1.2 1.9976 1.3333 3.6569 3.3333 -0.99888 2 3.6569 -1.2929 0.79999 Amplification Peak 12 - CN values 8q11.21 chr8:49200001-49810000(probes 136059:136125) chr8:49710001-49730000(probes 136111:136113) chr8:49100001-49879999(probes 136047:136133) 0.0090234 0.36612 Actual Copy Change Given 0.66667 2 2 0 0 -9.8624e-05 0 0 -0.66545 0.39999 2.6666 3.6569 2 1 0.66667 2 0 0.39999 0.66667 -0.00034308 1 0 0 0 3.5 2.9989 3 3.6569 0 0 1 -0.66667 0.66667 -0.66536 0.66456 0 0.6672 -1 0 3.6569 0 1 0.66667 -0.014458 0 0 0.00028571 0.99999 -0.005389 1.3333 -0.66667 0.4986 3.6569 3.6569 0.66667 0 0 0 0.66667 0 2 -0.66649 -0.66667 0.66667 1.334 -0.4 0 0.66667 -1 2 1 0 -0.0054377 0 0 0.66667 2.5 0.99999 0.66667 0.66667 0.66667 0.79999 0.66667 0.5 0 0 0.66667 2.6666 2 0.5 0.66667 0.0015167 0 0.66667 1.9882 -1 0.99999 1 -0.4 1.9976 -0.66666 1.3333 3.6569 0.0018177 0.5 0.99999 0 0.39999 Amplification Peak 13 - CN values 8q24.21 chr8:126620001-128620000(probes 144266:144516) chr8:127340001-127400000(probes 144357:144364) chr8:99900001-145138636(probes 141464:146056) 7.8182e-10 5.0676e-06 Actual Copy Change Given 1.3333 2 2 1 0 -9.8624e-05 -0.0054993 3.6569 0.66909 2 2.6666 2.9998 0.5 2 1.3333 2 0.99999 2 0.66667 0.66667 1 0 0 0.33333 3.6569 1.9991 2.9944 2.9971 1 0 1 0.66667 0.66667 0.0019622 0.66567 1.6 0.6672 1 3.6569 0.66667 2.8 3 1.3333 0.016978 0.79999 0.99999 0.00028571 1.5 0 3.6569 0 0 3.6569 2 0.66667 0.66667 -0.0092342 1.3333 0.66667 0 2 2.6673 -0.66695 0.66667 0.6672 0.40095 3.6569 0.66667 0 1.3333 1 0 -0.0054377 0 0 0.66667 3 0.99999 0.66667 1.3333 1.3333 1.6 1.3333 0.5 2 0 2.6666 1.3333 2 0.99999 0.66667 0.0015167 0.66667 0.66667 0.66667 1 0.99739 1 -0.4 0.99821 1.3333 0.66667 2.3333 0.0018177 0.5 2 -0.0027492 0.39877 Amplification Peak 14 - CN values 8q24.3 chr8:142440002-142549999(probes 145854:145868) chr8:142460001-142510000(probes 145857:145862) chr8:99900001-145138636(probes 141464:146056) 1.9316e-08 0.21615 Actual Copy Change Given 1.3333 2 3 1 0 -9.8624e-05 -0.0054993 3.6569 0.66909 1.2 3.3333 0.99987 0.5 0.99643 1.3333 2 0.99999 1.6 0.66667 0.66667 1 0 0 0 3.6569 1.9991 2.9944 3.6569 2 0 1 -0.0038579 0.66667 -0.66536 0.66567 1.6 0.00039697 0 -0.0060799 0.66667 2.4 3 2 0.016978 0.79014 0.99999 0.99999 0.99999 0 0.66667 0 -0.5 0 2.5 0.65905 0 -0.0092342 1.3333 0.66667 0 2.6666 2.6673 -0.66695 0.66667 -0.9998 0.39999 2.5 0.66667 0 1.3333 2 0 0.65942 1.3333 0 0.66667 3.6569 0.99999 1 1.3333 0.66667 1.6 0 0.5 1.9969 1 3.3333 1.3333 2 0.99999 0.66667 -0.0025129 1.3333 0.66667 2 0 2 1 0 0.99821 1 0.66667 1.3333 0.33545 0 2 1.3333 0.39999 Amplification Peak 15 - CN values 9p24.3 chr9:1-789999(probes 146057:146062) chr9:1-40000(probes 146057:146061) chr9:1-809999(probes 146057:146064) 0.00018604 0.00018604 Actual Copy Change Given -0.66667 2.6666 2 1 -0.33333 -1 0 -1 0.66909 0.39999 1.3333 0.4999 1.5 0 -0.66667 -1 0.5 0.39999 0.66667 0 0 1.3333 -1 0.66667 0.5 2.9989 -1 1 -1 0 -1 0.66667 0.66667 2.0039 0.66667 -0.4 -0.6664 0 -0.5 3.3333 1.6 0 0.66667 0.016978 -0.4 0 -0.5 0.5 0 0 0.66667 0.99999 0.66667 -0.5 -0.66667 -1.2929 0 0.66667 0.11653 0 1.3333 0.00026197 -0.66667 -1.2929 -0.333 0.39999 0 -0.66667 2 0.66667 0 0 1.3243 0.66667 0.99999 1.3333 0 -0.5 0 0.66667 1.3333 0.79999 -1.2929 -0.5 -0.093631 3 0.66667 0.66667 0 0.5 1.3333 0.0015167 -0.66667 0 0 0 2 -1 -0.8 1.9976 0.33333 0 0 0.0018177 0.5 -1 0.66667 0.39999 Amplification Peak 16 - CN values 9q34.3 chr9:138250002-138394717(probes 157023:157039) chr9:138260001-138290000(probes 157024:157027) chr9:138260001-138394717(probes 157024:157039) 0.01935 0.01935 Actual Copy Change Given 1.3333 0 2 0 0 0 -1 0 0.0018201 0.79999 0 0.4999 0 1 0.66667 0 0 0.39999 0.66667 0.66667 1 0.66667 -1 1 0 -0.00045498 0.98216 0 1 0 -1 -0.66667 -0.66667 0.66928 -0.66667 1.2 0.00039697 1 0.5 -0.66667 0.79999 -1 0 0.016978 -0.4 0 0.5 0.99999 2 0 0.66667 1.5 0 0 0.66667 2 -0.0031106 0 0.66667 0.00011437 0 0.66702 0.66667 0.66667 0.00039739 1.2 0.0048881 0.66667 1 0 0 0 0.65942 -0.66667 0.99999 1.3333 0 0.5 0.33333 0 0.66667 0.39999 0 0.99999 0.5 0 0 2 0.66667 0 -0.66667 0.5019 -0.66667 0.66667 -0.66667 0 1.5 -1 0.39999 1.9976 0 0 0.33333 -0.33181 0.5 -1 0.66667 0.39999 Amplification Peak 17 - CN values 11q13.3 chr11:69530002-70740000(probes 176293:176456) chr11:70420001-70450000(probes 176411:176415) chr11:68680001-74910000(probes 176183:176963) 3.6022e-12 3.6022e-12 Actual Copy Change Given 3.6569 0 0 -1 0 -0.00042716 0 0 0.0020797 -0.4 0.66667 3.6569 3.6569 0 0.66667 -0.002129 -0.5 2.8 3.6569 -0.66667 1.0025 0.00017714 0 0 0.5 -0.00022409 1 0 0.00012551 0 3 1.3333 0.66667 2.6712 0 0 0.00039697 3.6569 0 0 0 0 0 2.5382 0 0 0.00027973 0 0.66667 0.66667 0.66667 1.5 3.6569 0.99999 0.66667 -0.66667 1 3.6569 0 0.0023051 0 3.6569 0 -0.66667 -0.6664 0 0 0 0 1.3333 3.6569 0 -0.0054377 0.66667 0 0.66667 0 0 0.66667 0 0 3.6569 -0.66667 -4.5017e-05 0 0 0 0 1.3333 1.4982 1.3333 0.0015167 0.66667 0 0 3.6569 -0.5 0 0.39999 0.99821 -0.33333 3.6569 3.6569 3.6569 0.00043839 0.0010318 0 1.2 Amplification Peak 18 - CN values 12p13.33 chr12:40002-790000(probes 183120:183122) chr12:50001-780000(probes 183121:183121) chr12:50001-810000(probes 183121:183124) 0.051972 0.051972 Actual Copy Change Given 0.66667 1.3333 1 0 0 1 0 0 0.69932 0.79999 0.66667 0.99987 0 0 0 0 0 0 0.66667 0 1 0.66641 0 0.66667 0.99999 0.99932 1 2 2 0 1 0.66667 0 0.0019622 2.6666 0 -0.6664 0 0.99999 0.66667 0.79999 0 1.3333 0.016978 0.79999 0 0 0.5 3.3333 0.66667 0 1.5 1.3333 1.5 1.3333 0.66667 1 2.6666 3.6569 0.66667 1.3333 0.00026197 0.66667 0.66667 0.33379 1.2 0 1.3333 0 1.3333 0 0 0.65942 0.66667 0 2.6666 0.99999 0.99999 0.66667 2 2 1.2 -0.66667 0.5 -0.00037717 3 0.66667 0.66667 0.66667 2 1.3333 0.0015167 0 0.66667 0 1.9989 1.5 0 0.40088 1.9976 1.9998 0.66667 0.33333 0.33545 0.5 0.99999 0 0.39999 Amplification Peak 19 - CN values 12q15 chr12:66650001-72370000(probes 189315:189936) chr12:69540001-69600000(probes 189638:189644) chr12:69540001-69630000(probes 189638:189647) 0.19988 0.19988 Actual Copy Change Given -0.66652 0 3 0 0.66667 0 0 0 0.0018201 0.40189 0 0.99987 0 -0.0018347 0.66667 0 -0.5 -0.8 1.3333 0.66667 0 0.66641 -0.00050064 1.3333 0.5 -0.00045498 1 1 0 -0.00072012 0 2 -0.66667 0.0019622 0 0 0.00039697 0 0 -0.0022004 0 0 0 0.0044274 -0.0021978 7.9384e-05 0 0.99999 0.66667 0.66667 0 2 0 0.5 0 -0.001646 0 0 3.3333 0 1.3333 1.3338 0 1.3333 0.00018888 0.39999 0 1.3333 0 0 0.99547 0 0.65942 0.66667 0 3.6569 0 0.99999 0.66667 3.6569 0.66667 3.6569 0.66667 -0.00012286 0 0 0 0.66667 0 -0.5 0 0.0015167 0 0.66667 3.3333 0 0.98842 0 -0.4 2.997 0 0.33333 0.66667 0.0018177 0.5 -0.5 0 0.38739 Amplification Peak 20 - CN values 13p11.2 chr13:16100002-16219999(probes 197607:197626) chr13:16170001-16180000(probes 197618:197619) chr13:16110001-16239999(probes 197608:197630) 0.038947 0.038947 Actual Copy Change Given 0 0.66667 1 1 -0.33333 -1 -1 2 0.0018201 1.2 -0.66667 1.4998 -0.5 1 0 0 0 0.39999 -0.66667 -0.66667 -1.2929 0.66667 -1 0.66667 1.5 0.99932 -1 1 -1 -1 3 0.66667 0.66667 0.66928 -1.2929 -0.8 -1.2929 -1 -1.2929 0 0 -1 -0.66667 -1.2929 -1.2929 -0.5 0.5 0 -1.2929 -0.66667 -1.2929 3.6569 0 -1.2929 0.66667 0 -1 -1.2929 0.66667 0.66667 -1.2929 -1.2929 -1.2929 2 0.00039739 0.39999 0.5 1.3333 -1.2929 0.66667 -1 0 -0.67029 -1.2929 -0.5 -0.66667 0 0 -0.33333 -0.66667 0.66667 0.39999 2 2.5 -1 -1 0 -0.66667 0.66667 -1.2929 2.6666 -0.49886 -0.66667 0 0 -1 -1.2929 0 1.2 0.49852 0.33333 0.66667 2.6667 -1.2929 -1.2929 0.5 0.66667 -1.2929 Amplification Peak 21 - CN values 14q13.3 chr14:36430002-38030000(probes 210661:210868) chr14:37350001-37380000(probes 210787:210790) chr14:37160001-37789999(probes 210758:210838) 0.058946 0.058946 Actual Copy Change Given 0.66667 0.66667 1 -1 -1 -1 0 0 0.66909 3.6569 3.6569 2.0013 0.5 -1 -0.66667 0 0 0 3.6569 0 0 0.66667 -1 -0.66666 0 1.9991 1 2 -1 0 2 1.3333 0.00067514 -0.66536 0 -0.8 0.6672 -1 0.5 1.3333 -0.4 0 0.66667 0.016978 -0.003046 0.99999 0 0 0 0 -0.66667 0.99999 0 0.5 0.66667 0.66667 0 -0.66667 0 0 -0.66667 -0.66649 3.3333 1.3333 0.00039739 0 0 0 -1 0 0 -1 1.325 2.6666 0 0 1.0004 0.5 0.66667 0 -0.66667 0 -0.66667 -1 0 -1 0.66667 -0.67227 -0.66667 -0.5 0.66667 -0.99924 1.3333 2.6666 0 0 0 0 0.39946 1.9976 -0.66666 1.6667 0.66667 -0.66545 -0.5 0.5 2 0 Amplification Peak 22 - CN values 15q26.3 chr15:101940002-101991189(probes 227414:227422) chr15:101950001-101991189(probes 227415:227422) chr15:101940001-101991189(probes 227413:227422) 0.0015499 0.0015499 Actual Copy Change Given 0.66667 1.3333 2 1 -0.51866 0 0 0 0.0040827 0 0.66667 0.4999 1.5 0 0 -1 0.5 -0.0001912 0.66667 0.66667 0 0.66667 0 0.66667 0.49856 1.9991 1 1.0018 1 0 -1 0 1.3333 1.3366 0 0 -0.6664 -0.0035882 0.5 0.66667 1.6 0 0 0.52123 1.6 0 0 0.5 3.3333 -0.66579 0.66667 0.99999 0.66667 0.5 0.66667 -0.0020179 0.00058195 0.66667 0.66667 0.66667 1.3333 0.66702 1.3333 -0.0061224 0.00039739 1.2 0 0.66667 0 0 0 1 1.9891 0 0 0.66667 0.5 0.99999 0 0.66667 1.3333 0.39999 0 0.5 1.4405 1 0 0.66667 1.3318 -0.5 -0.66667 0.0015167 0 0 0 0 0.5 0 0.39999 0.99821 0 0.33502 0 0.0018177 0 0 1.3333 0.79999 Amplification Peak 23 - CN values 17q25.3 chr17:81880002-82089999(probes 241816:241845) chr17:81980001-82050000(probes 241831:241838) chr17:81680001-82259999(probes 241788:241853) 5.0505e-05 5.0505e-05 Actual Copy Change Given 1.3333 1.3333 1 0 -1 -1 0.00032963 0 0.66824 -0.4 0 1.9998 0.99999 0.99841 0.66667 0 0.47502 0.39999 0.66667 0 1 0.66667 0.00071534 1.3333 0.99999 0.99932 -1 1 1 -1 -1 1.3333 1.3333 1.3366 0 1.2 1.334 0 0.99999 0.66667 0.39999 -1.0013 3.3333 0.52123 1.6 0.5 0.5 0 2 1.3333 0.0012532 0.99999 0.66667 0.5 0.66667 1.3333 1 0 0.66667 0.66667 0.66667 0.66702 0 0.66667 0.33379 0.79999 0 -0.66667 1 0 0 0.0031827 1.9891 1.3333 1.5 0 0.5 1.5 0.33333 -0.0006365 1.3333 1.2 0.66667 0 0.99999 0 0.00081244 1.3333 0 0.5 1.3333 -0.0017437 0.66667 0 0.66667 0 2 0 1.6 1.9948 1 1.6845 1 0.31889 0.48389 -0.0021364 0 0.40201 Amplification Peak 24 - CN values 19p13.3 chr19:1-280000(probes 249184:249196) chr19:1-279999(probes 249184:249195) chr19:1-300000(probes 249184:249198) 0.0010745 0.0010745 Actual Copy Change Given 0.66667 0.66667 2 1 -0.60301 0 0 0 0.0018201 0.79999 0.66667 0.4999 0 0 0.66667 0 0 0.39999 1.3333 0 1 1.3333 -1 1.3333 0.5 0.99932 -1 1 1 0 0 1.3333 0 0.66928 -0.66667 1.6 0.00039697 1 0 0 0.79999 0 0 0.016978 0.39999 0 0 0.5 1.3333 0 0.66667 1.5 0.66667 0 0.66667 0.75831 1 -0.66667 1.3333 1.3333 0.66667 0.66702 0.66667 0.66667 0.00039739 1.6 0.5 -0.66667 1 0 0 0.0030509 1.3243 -0.66667 0.99999 1.3333 -0.5 0.5 0 0.66667 1.3333 0.39999 0.66667 1.5 0 1 1.3333 0.95115 0.66667 0.5 0 0.070301 0 0 0 1 2 -1 0.39999 2.4973 0 0 0.33333 0.33545 0.5 -1 0.66667 0.39999 Amplification Peak 25 - CN values 19q13.12 chr19:37260002-37320000(probes 252638:252646) chr19:37280001-37300000(probes 252641:252643) chr19:28180001-40910000(probes 251556:253054) 2.7299e-08 3.0558e-08 Actual Copy Change Given 0.66667 0.66667 2 2 -1 0 0 0 0.0018201 0.79999 0.66667 -8.1453e-05 3.6569 0 0.66667 0 0 3.2 1.3333 0 1 0.66667 0 0.66667 -0.5 2.9989 1 1 0 1 0 0.66667 1.3333 -0.66456 0.66667 2.4 1.334 -0.0024985 0 0 0.79999 0 0.66667 2.034 0.39999 0 0 0 0.67682 -0.66667 0.66667 2.5 3.6569 1.5 -0.66667 0.66667 0 0 0 2 1.3333 0.00026197 0 0.66667 -0.9998 0.39999 0 2 3.6569 -0.66667 -1 0 2.654 0.66667 0 0.66667 -0.48265 3 0 0.66667 0.66667 1.1988 0.66722 0 2.5 0 0.66667 0.66667 0 2 0.66667 0.5019 0.66667 1.3333 0.66667 1 1.5 0 0 0.99821 0.66667 1.6667 3.3333 0.0018177 1.5 -0.5 3.6569 0 Amplification Peak 26 - CN values 19q13.43 chr19:58360002-58617616(probes 254683:254688) chr19:58370002-58617616(probes 254684:254688) chr19:58370002-58617616(probes 254684:254688) 0.0020838 0.0031238 Actual Copy Change Given 0.66667 2.6666 2 0 -1 0 0 0 -0.66545 0.39999 0 0.0032768 0.5 0 0.66667 0 0 -0.79195 0 0.66667 1 1.3333 0 1 0 2.9989 1.0138 1 2 1 0 1.3333 0.66667 -0.66536 0.66667 -0.4 -0.6664 -0.0024985 0.5 0 2 0 1.3333 -0.48727 1.6 0 0 -0.0044148 2.6666 -0.66198 0.66667 3 -0.033558 0 0.66667 0.66667 0 0 0 3.6569 1.3333 -0.66649 0.66667 0 -0.9998 0.40671 1.5 2.8965 2.7084 0 0 0 1.9891 0.66667 0 2 -1 0.99999 0.33333 0.66667 2 1.1988 0.66722 0 0 0 0.66667 0 0 1.5 -0.66667 -0.99924 0.66667 -0.66667 0.66667 -1 0.99999 1 0.79999 0.99721 1.6667 -0.33333 -0.66666 -0.99909 0.5 -0.5 0 0 Amplification Peak 27 - CN values 20q11.21 chr20:31300002-32360000(probes 257191:257319) chr20:31890001-31980000(probes 257264:257273) chr20:31250001-35810000(probes 257182:257724) 0.002847 0.002847 Actual Copy Change Given 0.66667 0.66667 2 0 1 0 0 3 3.6569 1.6 1.3328 -8.1453e-05 0.5 0 0.66578 0 0 0 1.3333 0 1 1.3333 3.6569 0.66575 2 1.9991 2 0.99891 0 0 1 0.66667 0 0.66928 0 2 0.00039697 0 0.48422 2 0.39969 0 0.66667 0.52123 0 0 0 0.5 0.66348 0.002101 2.6666 2 0.66667 1.5 0.66667 0.66731 0 3.3333 2 0 0.66765 0.66702 0 0.66667 -0.333 1.2 0 0 0 2.6666 2.9788 0 1.3243 1.3333 0 0.66667 0 0.5 1.3333 0.66308 0.667 1.6 2.656 2 0 0 0.66667 3.6569 0.66667 0.99999 1.3333 0.0015167 2 0.66667 0 0 3.6569 0 0.39999 1.4979 0.66667 0.66667 0.66667 0.0018177 0.5 1.5 0.66667 1.2 Amplification Peak 28 - CN values 21q21.1 chr21:10330001-18980000(probes 261999:262527) chr21:16130001-16180000(probes 262213:262218) chr21:16130001-16199999(probes 262213:262221) 0.2097 0.2097 Actual Copy Change Given -0.66667 -0.66667 2 1 -0.66666 0 0 0 0.0018201 -0.4 0 3.6569 -0.5 0 0 0 -0.5 -0.4 0.66667 -0.66667 1 3.3333 0 -0.66666 0 -0.00045498 1 0 0 -1 -1 -0.66667 -0.66667 0.0019622 -0.66667 -0.4 -0.66577 -1 -0.5 -0.66667 0 0 -0.66667 0.016978 -0.4 0 0.99999 0 0 0.66667 0 2 -0.66667 0 0.66667 -0.66667 0 2.6666 1.3333 -0.66667 0 -0.66649 2 0 1.0006 0 0 -0.66667 0 3.3333 0 -1 -0.0054377 -0.66667 0 0.66667 -1 -0.5 0 0 0 -0.4 -0.66667 0 -1 0 0 1.3333 -0.66667 -0.5 -0.66667 0.0015167 0 -1.2929 0 -1 3.6569 0 1.6 0.00061246 0.33333 0 0 0.0018177 -0.5 -0.5 -0.67253 0.79999 Amplification Peak 29 - CN values 22p11.2 chr22:11370002-11510000(probes 266376:266394) chr22:11430001-11450000(probes 266383:266385) chr22:11380001-11470000(probes 266377:266388) 0.15899 0.15899 Actual Copy Change Given 0.66667 0.66667 1 1 -0.33333 -1 -1 1 -0.66545 -0.4 0.66667 0.99987 0 1 0 2 0 0.39999 1.3333 -1.2929 0 0.66667 0 0.66667 0 -0.00045498 0 1 -1 0 0 0 0.66667 0.0019622 -0.66667 -0.8 -1.2929 -1 0 0 0 0 0 0.016978 0 -0.5 0 0 0 0 0.66667 0.5 0.66667 3.6569 0.66667 0 0 -0.66667 0 0.66667 -0.66667 -1.2929 0 -1.2929 -0.333 2.8 -1.2929 0 -1 0.66667 -1 0 1.3243 0.66667 0 -0.66667 0.5 0 -0.66666 -0.66667 1.3333 0.39999 0.66667 2 0 -1 0 -0.66667 0.66667 -1.2929 0 0.0015167 -0.66667 0 0.66667 -1 0.99999 0.00054738 0.39999 -0.0011868 0.33333 -1.2929 0.33333 0.0018177 -1.2929 0 2.6666 0 Deletion Peak 1 - CN values 1p13.3 chr1:100730002-119370000(probes 9984:11858) chr1:101790002-112540000(probes 10104:11122) chr1:89970001-149939999(probes 8842:11922) 1.0152e-07 1.0152e-07 Actual Copy Change Given -0.66667 0 0 0 -0.00098644 -0.99788 0 0 -0.66612 -1.2 -0.66667 -8.1453e-05 -0.5 0 0 0 -0.5 -0.8 0 -0.66667 0 -0.66667 -1 -1.2929 -0.5 -0.00045498 0 0 -1 0 0 -0.66667 0 -0.66272 0 0 -0.6664 -1 0 -0.66667 -0.4 0 -0.66749 -0.48727 0 -1 -0.5 0.00063314 0 0 0.66667 0.5 -0.66667 -0.5 0 -0.66667 -0.00072827 0 -0.66667 -0.66667 -0.66504 -0.66649 -0.66667 -0.67186 -0.9998 0 -1 -0.66667 -1 0.66667 -1 0 -0.0054377 0 0 -0.66667 -1 -0.5 0 -0.66667 -0.66667 0 -0.66667 0 0 -1.0018 0 -0.66667 0 -0.5 0.00022781 -0.99924 -0.66667 0 0 -1 -0.5 0 -0.4 -0.0011868 0 0 -0.66666 0.0018177 -1 -0.5 -1.2929 -0.4 Deletion Peak 2 - CN values 2q22.1 chr2:140570002-142879999(probes 34733:35041) chr2:140230001-142150000(probes 34685:34965) chr2:140950001-141450000(probes 34788:34865) 5.2359e-05 0.00021111 Actual Copy Change Given -1.2929 -0.66667 0 0 -1.2929 0 0 0 -0.66545 0.79999 0.66667 1.4998 0.5 0 -0.66667 0 -0.0006847 -0.8 0 -1.2929 0.99931 0 0 0 0 0.99932 0 0 -0.0015284 0 6.9561e-05 0 0 0.66928 0 1.6 0.00039697 0 0 -1.2929 0.39937 -0.00054065 0.00014874 0.016978 0 -0.5 -0.5 0 -0.082527 -0.66667 -0.66667 0 -0.66667 0 0.66667 0 0 0 -1.2929 0 -0.66667 0 0 0 0.00068654 0.39999 0 -1.2929 0 -0.66667 0 0 1.3254 0.66667 -0.0019346 0.66667 0.5 0 -0.66666 4.9371e-05 0.66575 0.39999 -0.66667 0 -1 0 0 0.66667 1.3333 -0.5 0 -0.99924 0.66667 -1.2929 1.3333 -0.0016989 0.99999 0 0.39999 0.99821 -1.2929 -0.33333 0 2.0036 0.5 0 0 0 Deletion Peak 3 - CN values 2q37.1 chr2:208820002-242193529(probes 41945:45392) chr2:232510002-232550000(probes 44447:44451) chr2:212270001-242168382(probes 42318:45388) 0.0034472 0.022005 Actual Copy Change Given 0 0.66667 0 0 0 -1 0 0 -0.66545 0.79999 0 -0.00040213 -0.0045602 0.0022476 0.66667 0 -1.0022 -0.4 0 -0.66667 0.99931 0 0 0 0.00026783 0.99932 0.00061278 0.99611 0 0 6.9561e-05 -0.66667 0.0028321 0.0036668 0 -0.4 0.66825 0 0 0 0.39999 -0.00054065 0 -0.99151 -0.40766 -0.5 -0.5 -1 -0.68057 -0.66667 0.00032074 0 0 0 0.66626 0 -0.0033234 0.00024716 -0.00081978 0 -0.66987 0.00026197 0 -0.66667 -0.9998 0.39999 0 0.66667 0 0 -1 0 1.3243 0 -0.0004771 0.66667 0.5 0 -0.66666 4.9371e-05 -0.66667 0 0 -0.00050464 0 0 0.00074286 -0.66667 -0.66561 0 0.66667 -0.99924 0.66561 -0.66667 -0.66667 0 0.99999 0 -0.4 -0.0011868 -3.6456e-05 -0.33333 -0.33333 -0.66545 -0.5 0.00043278 0 -0.4 Deletion Peak 4 - CN values 3p13 chr3:45790001-89110000(probes 49448:53759) chr3:70940002-71079999(probes 51917:51933) chr3:45880001-93769999(probes 49457:54311) 3.9175e-06 0.0014437 Actual Copy Change Given -0.66667 -0.66667 0.0013418 -1 -1 -1 -1 -1 -0.66545 -0.40303 -0.66667 -8.1453e-05 -0.5 -1.0023 -0.66667 -1 -0.99937 -0.8 -0.66589 -0.66667 0 -0.66667 -1 -0.66666 -1 -0.00045498 -1 0 -0.99983 -1.2929 0 -0.66904 -0.66667 -0.66536 -0.66667 -0.8 0.00039697 -1 -0.5 -1.2929 -0.4 -1 -0.66667 -0.50609 -0.4 0 -0.5 -1 -0.66964 -0.66667 -0.66667 0 -0.66667 -1 -0.66645 -0.66667 0.00036644 -0.66667 -0.66693 -0.66667 -0.66667 2.6673 -0.66624 -0.66667 -1.0006 0 -1 -0.66667 -1 -1.2929 -1 -1 -0.67029 -0.66667 -1 -0.66667 -1.2929 -0.5 -0.66666 -0.66667 -0.66667 0 -0.66678 -0.99989 -1 -1 -0.66667 -0.66553 -0.66667 -0.5 0 -0.99924 -0.66667 -0.66667 -0.66667 -1 -0.5 -1 0.79999 -0.0011868 -0.66675 0 -1.2929 -0.99909 -0.5 -1 -0.66758 -0.4 Deletion Peak 5 - CN values 3p11.1 chr3:1-94010000(probes 45393:54318) chr3:89090002-89419999(probes 53759:53793) chr3:45880001-93769999(probes 49457:54311) 0.0023636 0.093069 Actual Copy Change Given -0.66667 0.66667 2 -1 -0.66666 -1 -1 -1 -0.66545 -0.3991 -0.66667 0.99987 0.5 -1.0023 -0.66667 3.6569 -0.99937 -0.8 -0.66589 -0.66667 1 -0.66667 -1 -0.66666 -0.5 -0.00045498 -1 0 0 -1 0 -0.66904 -0.66667 0.66928 -0.66667 -0.4 -0.0024125 -1 -0.5 -1.2929 0.79999 0 -0.66667 -0.48727 0 0 -0.5 -1 -0.66964 -0.66667 -0.66667 0 2 2 1.3333 -1.2929 0.00036644 -0.66667 -0.66693 -0.66667 -0.66667 -0.66649 -0.66624 0.66667 -1.0006 0 -1 -0.66667 -1 -0.66667 -1 0 -0.67029 -0.66667 -1 -0.66667 -1.2929 -0.5 -0.66666 0 1.3333 0 -0.66678 -1 3.6569 -1 -0.66667 -0.66553 -0.66667 -0.5 0 -0.99924 -0.66667 0 -0.66667 0 -0.50798 -1 1.2 -0.017026 -0.66675 0 -1.2929 -0.99909 -1.2929 -0.03418 0.66667 -0.40308 Deletion Peak 6 - CN values 4p16.3 chr4:1-9790000(probes 65093:65881) chr4:1290001-1439999(probes 65120:65121) chr4:1-9610000(probes 65093:65864) 0.0034472 0.0034472 Actual Copy Change Given 0 0.66667 -0.99665 0 -0.0083858 1 -1 0 -1.2929 -0.4 0 0 -0.5 0 -0.0019005 -1 0.5 -0.79978 0.66667 -0.66667 0 -0.66159 0 -0.99867 0 -0.97994 0 0 -1 0.96495 -1 -0.66667 0 -0.66536 -0.66667 -0.4 -0.6664 -1 -0.47771 0.66667 -0.3608 0 -0.66667 -0.48727 -0.77676 -0.5 -0.5 -0.99875 -1.2878 -1.2929 -0.018346 2.4416 -1.2929 -0.0063345 0 -1.2929 0 0.66667 -0.665 -0.6666 0 -1.2929 -0.66667 0 -0.99915 1.5312 0 -0.66667 -1 0.66667 0 -1 -0.0054377 -0.66667 0 -0.66667 -1 -0.49975 0 0 -0.66667 0.0052586 -0.66667 0 -0.9993 0 -0.66526 -0.66667 0 0.5 0 -0.99924 0.0073902 -0.66667 -0.66667 -1 -0.49681 0 -0.39967 -0.0011868 -0.66666 -0.33252 -1.2929 -0.0087332 -0.5 -1 -0.66667 -0.39573 Deletion Peak 7 - CN values 4q35.2 chr4:173310001-190179999(probes 82078:83231) chr4:187840002-190119999(probes 83223:83224) chr4:169670001-190130000(probes 81729:83226) 6.7567e-05 6.7886e-05 Actual Copy Change Given 0.015471 0.66667 0 -1 -0.66666 -1 -1 0 0.0018201 -0.4 0 0.4999 -0.5 0 0 -0.00053057 0 0 -0.66667 -0.66667 -0.00053057 0 0 0 0.5 -1.0002 0 1 -1 -1 0.0023898 -0.00034623 -0.66706 -0.66536 -0.66702 -1.2 0.0022678 -1 -0.5 1.3333 -0.40048 -0.00096381 -0.66667 -0.47618 -0.40674 0 -0.5 -0.5 0 -0.66667 0.00019061 0.5 -0.66667 -1.2929 -0.0087002 -0.66667 -0.0012681 0 0 0 0.66667 0.00026197 -0.66746 -1.2929 -1.0005 0 0.00056991 0.0028025 -1 0.66667 -1 0 0.65942 -0.66837 -1 0 -1.0003 0.5 0.00037939 0.00077074 0 -0.40044 0 0 -0.00024566 -1 0 0 -0.66667 0.5 -0.66667 -0.99869 -0.66667 -0.66699 -0.67523 -1 2 -0.0014849 0.39999 -0.0032981 -0.66666 0 -0.66666 0.0018177 -0.5 -0.5 0 0.39999 Deletion Peak 8 - CN values 5q12.1 chr5:58850001-60490000(probes 88572:88765) chr5:58950002-60490000(probes 88585:88765) chr5:59160001-60610000(probes 88607:88778) 2.0295e-05 2.0295e-05 Actual Copy Change Given -0.66667 -0.66299 0 -1.2929 -1 -0.99983 -1 -1 -0.66545 -1.2 -0.66667 -8.1453e-05 -0.5 -1 -0.66667 -1 -1 0.39999 -0.66667 -0.66667 0 -0.66667 -1 -0.66666 -1 -1.0002 -1 0 -1 -1 1 -0.66667 -0.66667 -0.66536 -0.0010843 -0.4 0.00039697 -0.00075736 -0.5 -0.66667 -0.4 -1 -0.66667 -0.48727 0 -0.5 0 -1 -0.66667 -0.66667 -0.66667 -1 -0.66667 -0.5 0 0 0 -0.66667 0 -0.66667 -0.66667 -0.66649 -0.66667 -0.66667 -0.9998 -0.4 -0.5 0.66667 0 -0.66667 -1.0012 -1 -0.67029 -0.66667 -1 0 0 -0.5 -0.66666 1.3333 -0.66667 -0.4 -0.66667 -1 -0.5 0 -0.66667 1.3333 -1.2929 0 0 -0.99924 -0.66667 -0.66667 -0.66667 -1 -0.5 0 -0.4 -1.0006 0 -0.33333 -0.66625 -0.99909 -0.5 -1 0.66667 0 Deletion Peak 9 - CN values 8p23.2 chr8:2130002-6410000(probes 131872:132098) chr8:2880002-5009999(probes 131877:132049) chr8:1-37950000(probes 131743:135113) 5.8018e-28 5.8018e-28 Actual Copy Change Given -0.66667 -0.66667 -0.21766 -1 0 0 -1 -1 1.3364 -1.2929 0 -1 -0.5 -1 -0.66667 -1 -1 -1.2 0 -0.66667 0 0 -1 -0.66666 -0.5 -1.2929 -1 -1.2929 -1 -1 0 -0.66667 -0.66667 -0.66536 0.66667 -0.8 -1.2929 -1 -0.5 -1.2929 -0.4 -1 -0.66667 -0.48727 0.39999 -1 0 -0.5 -0.66667 -1.2929 -0.66667 0.99999 -0.66667 -1 0.66667 -1.2929 0 -0.66667 -0.66667 -0.66667 -0.66667 -0.66649 -0.66667 -0.66667 -0.9998 -0.4 0 -1.2929 -1 -1.2929 -1 -1 -0.0054377 -0.66667 -1 -1.2929 1.5 -1 -0.66666 -0.66667 -0.66667 0.39999 -0.66667 0 -1 -1 -0.66667 0 -0.66667 0.99999 -1.2929 -0.99924 -0.66667 -1.2929 -1.2929 -1 -0.5 -1 -1.2 -1.0006 -1 0 -0.66666 0.0018177 0 -1.0011 -1.2929 0 Deletion Peak 10 - CN values 9p21.3 chr9:21860002-22449999(probes 147915:147994) chr9:21990001-22139999(probes 147935:147956) chr9:40001-32100000(probes 146062:148964) 3.0737e-45 3.0737e-45 Actual Copy Change Given -1.2929 -1.2929 0 -1 -1.2929 -1 -1.2929 -1.2929 -0.66545 -0.4 1.3333 -1.2929 -1.2929 0 -0.66667 -1 -1 -0.8 -1.2929 -1.2929 0 0 -1 -0.66702 -0.5 0.99932 -1 -1.2929 -1 -1 -1.2929 -1.2929 -1.2929 -1.2929 -0.66667 -0.4 -1.2929 -1 -1 -1.2929 -0.4 0 -0.66667 0.016978 -0.4 -1.2929 -0.5 -0.99973 -0.66667 -0.66667 0 -1 0 -1 -1.2929 -0.66667 -1 -1.2929 -1.2929 0 -1.2929 0.00026197 -1.2929 -0.66667 -1.2929 -0.4 -1 -0.66667 -1 -0.66667 -1.2929 -1.2929 -0.67029 -1.2929 0 -1.2929 0 -0.5 -0.66666 -1.2929 0.66667 -1.2929 -1.2929 -1.2929 -1 3.6569 -0.66667 -0.66667 -0.66667 0.49797 -1.2929 -0.99924 -0.66667 -0.66667 -0.66667 0 -0.5 -1 -0.8 -0.0011868 -1.2929 0 -0.66666 0.0018177 0 -1.2929 0 -0.4 Deletion Peak 11 - CN values 10q23.31 chr10:87850002-88280000(probes 165220:165273) chr10:87860001-87980000(probes 165221:165236) chr10:87110002-89480000(probes 165176:165390) 7.1958e-06 7.4317e-06 Actual Copy Change Given -1.2929 -0.66667 0 -1 0 -1.0017 0 0 -0.66712 -0.4 -0.66667 -8.1453e-05 -0.5 -1.2929 0 0 -1 0 0 -0.66744 0 -0.66667 0 -0.66666 0 -0.00045498 0.00045804 -0.0011767 0 0.0020368 -1.0005 -0.66667 0 -0.66536 -0.0008134 -0.8 -0.66709 -0.00028614 -0.00015874 0.66667 -0.4 -1.2929 -0.66667 0.52123 0.0004935 -0.50137 -0.5 0 0 -0.66833 -0.66667 -0.0031823 0 0 -0.66667 -0.66667 0 0 0 0.00062932 -0.66667 -0.66649 -0.66635 -1.2929 -1.2929 0.39999 -1 -0.66667 0.00018995 0 0 0 -0.0054377 -0.66667 -1 0 -0.0051934 0.5 0 0 -0.66637 -0.4 0 0 -1.2929 -1.0013 -0.66667 -1.2929 -0.66667 -0.5 0 0.0015167 0 -0.66667 -0.66667 0.00022095 -0.50909 0 1.2 -0.0011868 0 -0.33333 0.00046471 -1.2929 -0.5 -0.5 -0.66127 0 Deletion Peak 12 - CN values 11p15.5 chr11:130002-31269999(probes 169867:173053) chr11:2250001-2330000(probes 170079:170086) chr11:2030001-5849999(probes 170049:170390) 0.042737 0.042434 Actual Copy Change Given 0.66667 0 0 -1 -1 0 0 -1 0.0018201 -0.4 0.66667 -8.1453e-05 -0.5 -1 -0.66667 0 -1 -0.80096 -0.66667 -0.66667 0 0.00017714 0 -0.66666 -0.5 -0.00045498 1 0 0 1 0 -1.2929 -0.66667 -0.66536 0 0 0.00039697 0 0 -0.66667 0 -1 0 0.016978 -0.4 0 0 -1 0.66667 -0.66667 0.66667 -0.5 0 -0.5 -0.66667 0 0 0 -0.66667 0 -0.66667 -0.66649 -0.66667 0.66667 0.00039739 0 -1 0 0 0 -1 -1 -0.67029 0 0 0.66667 0 0.5 -0.66666 0 0 0.39999 0 0 0 0 -0.66667 0 -0.66667 0 0.66667 -0.99924 0.66667 0 1.3333 0 0.99999 0 -0.4 0.49852 -0.66666 -0.33333 -0.66666 -0.33181 0 0 0.66667 -0.4 Deletion Peak 13 - CN values 11q21 chr11:74720002-135086622(probes 176944:183111) chr11:95760001-95790000(probes 179153:179158) chr11:95760001-95819999(probes 179153:179161) 0.11733 0.11709 Actual Copy Change Given 0.66716 0.0001741 0.00019113 -1 0 -0.00042716 0 0 0.0018201 -1.2 0.66667 -8.1453e-05 -1 0 0.66667 -0.002129 -1 -0.8 0.00020757 0 1.0025 0.00017714 0 0.33333 -0.5004 -0.00022409 1 0 0.00012551 0 1.0029 -0.66667 0 0.66928 0 0 0.00039697 -1 0 0 0 0 0 -0.48727 -0.8 0 0.00027973 0.5 0.66742 0.66667 0 1.5 -0.66667 1.5 0.66667 0 1 -0.66667 0 0 0.66667 -0.66649 0 -0.66667 -0.66648 0 0 0 0 0 -1 0 0.65942 -0.010033 0 -0.66667 0.50185 0.5 0.66667 0 0 -0.0006166 -0.66667 -4.5017e-05 0 0 0 0.0010222 1.333 1.5 0 0.0015167 0.66667 0 0 -1 -1.2929 0 0.39999 -0.0011868 -0.33333 -0.33333 -0.66666 -0.99909 0 0.0010318 -0.33463 -0.8 Deletion Peak 14 - CN values 13q11 chr13:1-18870000(probes 195988:197901) chr13:18190001-18249999(probes 197867:197873) chr13:18050001-18389999(probes 197850:197892) 5.9354e-06 0.003055 Actual Copy Change Given 0 -0.66667 -1 -1 -1 -1.2929 -1 -1 -0.66545 -0.4 -1.2929 1.4998 0.5 -1 0.66667 -1 0.5 0.79999 -0.66667 -1.2929 0 0 -1 -0.33333 0.5 -0.00045498 -1 0 -1 -1 0 0 0 -0.66536 0 -0.4 0.00039697 -1 -0.5 0 -0.4 -1 -0.66667 0.016978 -0.4 0 0 0 -0.66667 -0.66667 0 0.5 0 -1 0 -0.66667 0 3.3333 -0.66667 0 1.3333 -1.2929 -0.66667 0.66667 -0.9998 0 -1 0 0 -0.66667 0 0 -0.67029 -0.66667 -1 0 -1.2929 -0.5 -1.2929 -0.66667 1.3333 -0.4 -0.66667 0 0.5 -1 0 -0.66667 0 -1.2929 -0.66667 -0.99924 -0.66667 -0.66667 -0.66667 -1.2929 0.99999 0 1.2 1.9976 0 3.6569 -1 0.0018177 -0.5 0.99999 -0.66667 0 Deletion Peak 15 - CN values 13q14.2 chr13:48280002-48500000(probes 200718:200747) chr13:48290002-48500000(probes 200719:200747) chr13:34220001-69889999(probes 199274:202605) 4.4553e-06 6.7886e-05 Actual Copy Change Given 0 -0.66667 1 -1.2929 -1 -1 -1 -1 -0.66545 -1.2 -1.2929 -1 -0.5 -1 0.66667 -1 -1 -0.4 -0.66667 -0.66667 0 0 -1 -0.33333 -0.5 -0.00045498 -1 0 -1 -1 0 -1.2929 0 0.66928 0 -0.4 -0.6664 0 -0.5 0 -0.8 -0.99974 -0.66667 0.011141 -0.4 -1 -0.5 -1.2929 -1.2929 0 0.003358 0.5 -0.66667 0 0 -0.66667 0 -0.66667 -0.66667 0 -0.66667 -0.66649 -0.66667 -0.66667 0.00039739 -0.4 -1 0 -1 -1.2929 -1 -1 -0.67029 -0.66667 -1 -0.66667 -1.2929 0 -0.66666 -1.2929 -0.66667 -0.4 -0.66667 0 -1 -1 0 -0.66667 0.66667 -0.5 -0.66667 -0.99924 -0.66667 0 -0.66667 0 -0.5 -1 -0.4 -0.0011868 -0.66666 -0.66666 0 -0.99909 -0.5 -0.5 0 0 Deletion Peak 16 - CN values 14q11.2 chr14:1-20069999(probes 207214:209043) chr14:18210001-20050000(probes 209041:209042) chr14:18220001-20069999(probes 209042:209043) 0.037211 0.036857 Actual Copy Change Given -0.66667 1.3333 1 -1 -1 -1 0 0 0.66909 0.79999 2 1.9998 0.5 -1 -0.66667 0 0 0 1.3333 -0.66667 0 0.66667 -1 -0.66666 0 1.9991 1 2 -1 0 0 0.66667 0 -0.66536 0 -0.8 -0.6664 0 0.5 0.66667 -0.4 0 0 0.016978 0.39999 -0.5 0 0 0 2 -0.66667 0.99999 0 0.5 0.66667 0 0 0.66667 0 0 -0.66667 0.00026197 0.66667 -0.66667 0.00039739 0 0 0 -1 0 0 -1 1.3243 -0.66667 0 0 0.99999 0.5 -0.66666 0 -1.2929 0 -0.66667 -1 0 1 0 0.66667 -0.66667 -0.5 0.66667 0.0015167 0 0 0 0 1.5 0 0.39999 0.49852 1 0.33333 1.3333 -0.66545 -0.5 0.5 -1.2929 0 Deletion Peak 17 - CN values 16q24.2 chr16:76640001-90338345(probes 232995:234103) chr16:88450001-89259999(probes 234080:234082) chr16:88460002-89260000(probes 234082:234083) 0.19446 0.19666 Actual Copy Change Given -0.66667 0.66667 2 -1.0203 0 0 0 0 -0.66563 1.2014 -0.66667 -8.1453e-05 0 -1 0.66667 0 -1.0073 -0.4 -0.66667 -1.2929 0 -0.66667 0 0.66667 -0.5 -0.00045498 0 1 1 1.0728 -1 1.3333 0 0.0019622 -0.66667 -0.4 -0.6664 0 0.5 0.66667 1.2 -1 0.7598 -0.48727 0.39999 -0.5 0 0.5 0.66667 0 -0.66667 1.5 1.3333 -1 0.66667 -0.66667 0.12873 0 1.3333 0 0 -0.66649 0.00017191 -1.2929 -1.0013 0.39999 0 -1.2929 1 0 -0.005744 0 2.654 0 -1 -0.66667 0 0.5 0 0 0 -0.0010484 -1.2929 -1 0 -1 0.66667 -0.66667 -0.66667 -0.49924 0 -0.49886 0.66667 0.66667 0 0 0 0.032863 0 1.9976 0 -0.33333 0.66667 -0.99788 -0.49851 -0.5 0 -0.4 Deletion Peak 18 - CN values 17p13.2 chr17:1-20720000(probes 234104:235826) chr17:4130002-4289999(probes 234402:234409) chr17:120001-23219999(probes 234119:235958) 1.8508e-07 0.00041814 Actual Copy Change Given -0.66667 0 0 0 0 -1 0 -1 -0.66545 -0.4 -0.66667 1.9904 0 -1 -0.66667 -1 -1 -0.4 1.3333 0 0 0 -1 0.66667 -0.49887 -0.00045498 -1 1.0084 -1 -1 -1 1.3333 -0.66667 -0.66536 0 -0.4 -0.6664 -1 -0.5 0 -0.4 -1 -0.66667 0.014573 -0.4 -1.0012 -0.5 0 0.66667 0.0022606 -0.66667 2 0.66667 0 -0.66667 -0.66667 0 -0.66667 -0.66667 -0.66667 -0.66667 -0.66649 -0.66667 -0.66667 -0.9998 0.39999 0 -0.66667 -1 0 0 -1 0.65942 -0.66667 -1 -1.2929 -1.2929 -0.5 -0.66666 0 -0.66667 -0.4 -0.66667 0 -1 -1 -0.0013526 -1.2929 -1.2929 0 0 0.0015167 -0.66667 -0.66667 -0.66667 -1 -0.5 -1 0.40036 -0.0011868 -0.66615 0.66667 -0.6657 0.0018177 -0.5 0 -0.66667 0.39999 Deletion Peak 19 - CN values 17p11.1 chr17:21290002-27129999(probes 235889:236375) chr17:21400001-22740000(probes 235898:235899) chr17:120001-23219999(probes 234119:235958) 8.8998e-08 0.0071392 Actual Copy Change Given 0.66667 0 2 0 -1 1 0 -1 0.66909 -0.4 0 2.0017 0 -1 0 -1 -1 -0.39746 1.3333 0 0 -1.2929 -1 0.66667 0.99999 -0.00045498 -1 0 -1 -1 -1 3.6569 -0.66667 -0.66536 0 -0.4 1.334 -1 -0.49736 0 -0.4 -1 -0.66667 0.30933 -0.016003 -1.0012 -0.5 0 -1.2929 -0.66667 -0.66667 2.4511 2.6666 0 -0.66667 -0.66667 -0.0080875 0 0.66667 0 -0.66667 -0.66649 0 -0.67349 1.0006 0 0.5 -0.66667 0 0 0 1 0.65853 -0.66667 -1 -0.66667 -1.2929 0.5 -0.66666 -0.0006365 -0.66667 -0.4 -0.66667 0 -1 -1 -0.0013526 0.66667 -0.66667 0 0 0.004901 -0.66667 0.66667 -0.66667 -1 -1.2929 -1 0.40036 -0.0011868 0.66667 0 -0.66752 -0.66545 -0.5 -0.0021364 -1.2929 -0.8 Deletion Peak 20 - CN values 18q22.1 chr18:39750002-80373285(probes 245420:249183) chr18:65520002-66120000(probes 248105:248106) chr18:60550001-80373285(probes 247579:249183) 0.0053584 0.0053064 Actual Copy Change Given 0.66667 0.66925 2 0 0 -1 0 0 -0.66545 -0.4 1.3333 -8.1453e-05 -1 -0.00038403 -0.66667 0 0 -0.4 0.66667 0 0 0.00028307 -0.0040671 -0.66651 0.99999 -0.00045498 -1 0.00026529 -1 -1 0 -0.66667 1.3333 0.0019622 -0.66667 -0.40356 -0.6664 -1 0 -0.66667 0 -0.0015582 0.66667 -0.48727 0.79999 0 0 -0.0016719 0.66667 -1.2929 1.3333 -1 -1.2929 -1 -0.66667 0 0 0 -0.66667 0 -0.66667 0.66702 0 0.66667 -0.9998 0 -1 0 -1 -0.66667 -1.0061 0 -1.2929 -0.66667 0 0 -1 0 -0.66666 -0.66667 0 0.39999 -0.66667 0.99999 0 0 0 0.00098335 0.66667 -1 -0.66667 -1.0032 -0.66667 -0.66667 0 -1 0.99513 -1.0026 0.39999 0.49852 0 -0.33333 -0.66666 0.66909 -0.0015961 -0.5 0.66667 -0.0017915 Deletion Peak 21 - CN values 19p13.3 chr19:70001-16650000(probes 249192:250888) chr19:6870002-7119999(probes 249868:249870) chr19:2340001-11469999(probes 249418:250340) 0.0077433 0.0077188 Actual Copy Change Given -0.66667 -0.66667 0 0 -1 -1 0 0 0.0018201 -0.4 -0.66667 -8.1453e-05 -0.5 0 -0.66667 0 0 0.39999 -0.66667 0.66667 1 0.66667 -1 -0.66666 0 0.99932 -1 0 -1 0 0 0.66667 -0.66667 -0.66536 -0.66667 -0.8 -1.2929 0 -0.5 -0.66667 0 -1 -0.66667 0.016978 0.79999 0 0 0 0 1.3333 0 -0.5 0 0 0 -0.66667 0 -0.66667 -0.66667 0 0 0.00026197 0 0.66667 0.00076321 0 0.99999 0.66667 0 0.66667 0 0.0030509 0.65942 -0.66667 0 -1.2929 -1 0 -0.66666 -0.66667 0.66667 -0.4 0.66667 0 0.00057818 0 0 0 0 -0.5 0 -0.99924 -0.66667 0 0 0 0.99999 -1 -0.4 0.49852 -0.66666 0 0 0.0018177 0.5 -1 -0.66667 0.79999 Deletion Peak 22 - CN values 21p11.2 chr21:7820002-8989999(probes 261614:261789) chr21:8200002-8420000(probes 261675:261702) chr21:7870001-8720000(probes 261622:261752) 0.00025533 0.003055 Actual Copy Change Given 0 0.66667 -1 -1 -1 -1 -1 0 0.0018201 0 -0.66667 0.4999 0.99999 -1 0 -1 0 -0.4 0.66667 -1.2929 0 0 -1 0 -0.5 -0.00045498 0 2 -1 -1 -1 0 -0.66667 -0.66536 -0.66667 -0.8 -0.6664 -1 0 0 0 0 -0.66667 0.016978 -0.4 0 0 0 0 0 -0.66667 -1 -0.66667 -0.5 0 0 0 0 -0.66667 -0.66667 0 -0.66649 -0.66667 -0.66667 -0.6664 -0.4 -0.5 -0.66667 -1 0.66667 -1 0 -0.0054377 -0.66667 -0.5 -0.66667 -0.5 0 -1 -0.66667 0.66667 0.39999 0 0 -0.5 -1 0 0.66667 0 -1.2929 -0.66667 -0.99924 -1.2929 0 -0.66667 -1 0.99999 0 0.39999 0.49852 -0.33333 0.33333 -1.2929 0.33545 -1 -1.2929 0 0 Deletion Peak 23 - CN values 21p11.2 chr21:9120002-14110000(probes 261813:262016) chr21:9770001-9830000(probes 261907:261915) chr21:9360001-13990000(probes 261850:262002) 0.0036436 0.098282 Actual Copy Change Given -0.66667 0 0.99066 0 -1 -1 -1 -1 -0.66545 0 -0.66667 0.4999 -0.5 -1 0 -1 0 0 -0.66667 -0.66667 0 -0.66667 -1 -0.33333 0.5 -0.00045498 0 0 -1 -1 0 0 -0.66667 -0.66536 -0.66667 -0.8 -0.66577 -1 0 0 0 0 -0.66667 0.016978 -0.4 -0.5 0 -0.5 0 0.66667 -0.66667 0 -0.66667 -1 0 -0.66667 0 2 -1.2929 -0.66667 0 -1.2929 -0.66667 0.67584 -0.333 0.39999 -0.5 -0.66667 0 0 0 0 -0.0054377 -1.2929 -0.5 -0.66667 -0.5 -0.5 -0.33333 -0.66667 2 -0.4 -0.66667 -0.5 -0.5 -1 -0.66667 0 0 -1 -1.2929 -0.99924 -1.2929 -0.66667 -0.66667 -1 0.99999 0 0.39999 0.99821 0.33333 1 -0.33333 0.0018177 -0.5 -0.5 -0.66667 0 Deletion Peak 24 - CN values 22p11.2 chr22:10960001-16940000(probes 266316:266861) chr22:11890001-11960000(probes 266455:266467) chr22:11730001-12240000(probes 266430:266514) 0.036634 0.035705 Actual Copy Change Given 0 0.66667 1 1 -0.33333 -1 -1 1 -0.66545 -0.4 0 -8.1453e-05 0 1 0 -1 0 0 0.66667 -1.2929 0 0.66667 0 0.66667 0.99999 -0.00045498 0 1 -1 0 0 0 0 0.0019622 -1.2929 -0.8 -0.6664 -1 0 0 0 0 0 0.016978 0 -0.5 0 0 0 0 0 0.5 0 2 0.66667 0.66667 0 -0.66667 0 0.66667 -0.66667 -1.2929 0 -0.66667 -0.333 0.79999 -1.2929 0 -1 0.66667 -1 0 -0.0054377 0 0 -0.66667 -1 0 -0.66666 -0.66667 0.66667 0.39999 0 0.99999 0 -1 0 0 0.66667 -1.2929 0 -0.49886 -1.2929 0 -0.66667 -1 0.99999 0.00054738 1.2 -1.2929 0.33333 0 0 0.0018177 -1.2929 0 -0.66667 0 Deletion Peak 25 - CN values Xp22.33 chrX:1-3279999(probes 269641:269678) chrX:250001-3249999(probes 269674:269675) chrX:1-3269999(probes 269641:269677) 2.0343e-15 4.9058e-12 Actual Copy Change Given -0.66667 0.66667 0 -1 -0.66666 -1 0 -1 -1.2929 -1.2 -0.66667 -1 -1 -1 0 -1 -1 -1.2 -0.66667 -1.2929 -1 -0.66667 -1 -0.66666 -1 -1.0002 0 0 -1 0 -1 -0.66667 -0.66667 -1.2929 -0.66667 -1.2 -0.66648 -1.0013 -0.5 -0.66667 -0.8 -1 -1.2929 -0.99151 -0.4 -1 -0.5 0.99999 -0.66667 -1.2929 -0.66667 0 0.66667 -0.5 -1.2929 -1.2929 1 -0.66667 -0.66775 -0.66667 -0.66667 -0.66649 -0.66667 -1.2929 -0.9998 -0.4 -1 -0.66667 0 -0.66667 -1.0015 0 -0.67029 -0.66667 0.5 -1.2929 -1.2929 -0.5 -1.2929 0.66667 -0.66667 -0.4 -0.66667 -1 -1 -1 -0.66667 -0.66667 -1.2929 -1 0 -0.99924 -0.66667 0 -0.66667 -1 -0.5 0 -0.4 -0.0060938 -0.66666 -0.33333 -0.66666 -0.66545 -1 -1.2929 -0.66667 -1.2 Deletion Peak 26 - CN values Xp21.1 chrX:11110001-55910000(probes 270000:273960) chrX:30840001-34640000(probes 271781:271982) chrX:30090001-34660000(probes 271705:271984) 0.00057554 0.079295 Actual Copy Change Given -0.66667 0.66667 0 -1 -1 -1 0 -1 -1.2929 -1.2 -0.66667 -1 -1 -1 0 -1 -1 -1.2 -0.66667 -0.66667 -1 -0.66667 -1 -0.66666 -1 -1.0002 0 0 -1 0 -1 -0.66747 -0.66667 -1.2929 -0.66667 -1.1969 -0.66648 -1 -0.5 -0.66667 -0.8 -1 -1.2929 -1.2929 -1.2929 -1 -0.5 0.99999 -0.67279 -1.2929 -0.66667 0 0 -1 -1.2929 -1.2929 0 0 -0.66775 -0.66667 -0.66667 -0.66649 -0.66667 -1.2929 -0.9998 -0.4 -1 -0.6685 0 -0.66667 -1.0015 0 -0.67029 -0.66667 0.5 -1.2929 -1.2929 -0.5 -1.2929 0.66667 -0.66667 -0.4 -0.66667 -1 -1 -1 -0.66667 -0.66667 -1.2929 -1 -0.66667 -0.99924 -0.66667 0 -0.66667 -1 -1.0325 0 -0.4 -0.0036246 -0.66666 -1 -0.66666 -0.99909 -1 -1.2929 -0.66667 -1.2086 Deletion Peak 27 - CN values Xq22.3 chrX:108140002-108790000(probes 278090:278161) chrX:108430001-108790000(probes 278132:278161) chrX:108330001-108630000(probes 278117:278159) 0.0017655 0.0065709 Actual Copy Change Given 0.66667 -1.2929 0 0 -1 -1 0 -1 -1.2929 2.8 0.66417 0.99987 -1.0074 -1 0.66667 -1 -1.2929 -0.4 -1.2929 -0.66761 -1.0011 -0.66771 -1 -0.66666 -1 0.99932 0 0 -1 -1.2929 -1 -0.66667 -0.66667 -0.66536 -0.66667 -0.40287 -0.66648 -1.0021 -0.5 -1.2929 -0.80807 -1 3.6569 -1.0091 -1.2 -1 -0.5 -1 -0.66667 -0.66667 -0.66714 -0.5 0.66667 0 -1.2929 -0.66667 0.0012921 -0.66667 -0.66712 -0.6686 -0.66667 -0.66649 -0.66667 -1.2929 -0.9998 -0.4 -1 -0.6685 0 -0.66667 -1 0 -0.67029 -0.66667 -0.5 -1.2929 -0.5 -0.5 -0.00088125 0 -0.66667 -0.4 -0.66667 -1.2929 -1 -1 -0.66667 -0.66667 -0.66667 -0.5 -0.66667 -0.99924 -0.66861 -0.66667 -0.66561 -1.0011 -0.5 0 -0.40113 -0.0011868 -0.66739 -0.66711 -0.66719 -0.99909 -1 -1 -0.66688 -0.40097 Deletion Peak 28 - CN values Xq28 chrX:154570002-156000000(probes 282129:282140) chrX:155670001-155969999(probes 282133:282134) chrX:155670002-155970000(probes 282134:282135) 3.4088e-25 1.1452e-24 Actual Copy Change Given 0.66667 2 -0.33752 0 -1.2929 0.69255 0 -1.2929 -1.2929 -0.4 -0.39597 -1.2929 -0.65961 -1 0.66667 -1 -1.2929 -1.2 -0.66667 -1.2929 -1.0011 -0.66771 -1 -0.66666 0.00071802 -0.00045498 -1.2929 0 -1 -1 -1 -1.2929 -0.66766 -0.66536 -0.66667 -1.2 -1.2929 -1.0134 -0.5 -0.66667 -0.82195 -1.2929 -1.2929 -0.99151 -1.2 -1.2929 -0.5 -1.2929 -0.66667 -1.2929 -1.2929 -0.5 -0.66667 0 -0.66667 -0.66667 1 -0.66667 -1.2929 -0.6686 -1.1057 -0.66649 -0.66667 -0.66756 -0.6664 -0.70432 -1 -1.2929 0 -1.2929 -1.2929 0 1.3243 -0.66667 -0.49785 -0.66667 -1 -1 1.3333 0 -0.66667 0 -0.66667 -1.2929 -1 -1 -0.66667 -1.2929 -0.66667 -1 -0.66667 -0.99924 -1.2929 -0.66667 -0.66667 -1.2929 -1 0 -0.4 -1.0006 -0.66739 -0.66711 -1.2929 -0.99909 -1.2929 -1.2929 -1.2929 -1.2 Deletion Peak 29 - CN values Yq11.23 chrY:9910002-56959204(probes 283199:288079) chrY:24750001-24829999(probes 284840:284848) chrY:11040001-57227415(probes 283329:288107) 1.1758e-14 1.4865e-13 Actual Copy Change Given -1.2929 -1.2929 0 -1.2929 -1.2929 -1 -1.2929 -1.2929 -1.2929 -0.4 -1.2929 -1.2929 -1.2929 0 -1.2929 -1.2929 -1.2929 -1.2 -1.2929 -1.2929 -1.2929 -0.66667 3.6569 -1.2929 -1.2929 -1.2929 -1 -1 2 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 2.8 -1.2929 -1.2929 -1.2929 -1.2 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 2 -1.2929 -1 -1.2929 -0.66667 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -0.66583 -1.2929 -1.2929 -1.2929 -1.2 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 0 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -0.66667 -1.2929 -1.2929 -1.2929 -1.2929 -0.99924 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -0.4 -1.2929 -1 -0.66666 -1.2929 -1.2929 -1.2929 -0.99797 -1.2929 -1.2929 Deletion Peak 30 - CN values Yq12 chrY:25730002-57227415(probes 284945:288107) chrY:56939339-57227414(probes 288079:288106) chrY:11040001-57227415(probes 283329:288107) 2.6376e-05 0.027561 Actual Copy Change Given -1.2929 -1.2929 0 -1.2929 -1.2929 -1.2929 -1.2929 -1 -1.2929 -1.2 -1.2929 -1 -1 -1 -1.2929 -1.2929 -1 -1.2 -0.66667 -1.2929 -1.2929 -0.66667 0 -1.2929 -1.2929 -1.0002 -1 0 -1 -1.2929 -1.2929 -0.66667 -0.66667 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -0.66667 2.8 -1.2929 -1.2929 -1.2929 -1.2 -1 -1.2929 -1 -1.2929 -1.2929 -1.2929 -1 -1.2929 -1 -0.66667 -0.66667 -1.2929 -1.2929 -1.2929 -0.66667 -1.2929 -1.2929 -1.2929 -0.66667 -0.9998 -1.2 -1.2929 -1.2929 -1.2929 -0.66667 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -0.66667 -1 -1 -0.66666 -1.2929 -0.66667 -1.2929 -1.2929 -1 -1 -1.2929 -0.66667 -0.66667 -0.66667 -1 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1.2929 -1 -1.2929 -0.8 -1.0006 -1 -0.66666 -1 -0.99909 -1.2929 -0.99797 -1.2929 -1.2