Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold C3L-00081 C3L-00415 C3L-00445 C3L-00568 C3L-00603 C3L-00904 C3L-00923 C3L-00927 C3L-00965 C3L-00993 C3L-01000 C3L-01285 C3L-01455 C3L-01606 C3L-01663 C3L-01838 C3L-01884 C3L-02127 C3L-02130 C3L-02163 C3L-02164 C3L-02168 C3L-02170 C3L-02349 C3L-02358 C3L-02546 C3L-02552 C3L-02619 C3L-02625 C3L-02627 C3L-02629 C3L-02646 C3L-02648 C3L-02649 C3L-02650 C3L-02660 C3L-02665 C3L-02669 C3L-02891 C3L-02951 C3L-02963 C3L-02964 C3L-02968 C3L-02969 C3L-03272 C3L-03678 C3L-03961 C3L-03962 C3L-03963 C3L-03965 C3L-04013 C3L-04014 C3L-04071 C3L-04391 C3N-00211 C3N-00221 C3N-00247 C3N-00497 C3N-00555 C3N-01017 C3N-01020 C3N-01025 C3N-01028 C3N-01194 C3N-01411 C3N-01846 C3N-01892 C3N-01893 C3N-02252 C3N-02283 C3N-02284 C3N-02285 C3N-02288 C3N-02289 C3N-02300 C3N-02339 C3N-02374 C3N-02375 C3N-02425 C3N-02426 C3N-02434 C3N-02435 C3N-02494 C3N-02523 C3N-02575 C3N-02675 C3N-03051 C3N-03072 C3N-03076 C3N-03092 C3N-03093 C3N-03204 C3N-03424 C3N-03425 C3N-03441 C3N-03486 C3N-03662 C3N-03848 C3N-03851 C3N-03875 C3N-03877 C3N-03880 C3N-03882 C3N-03886 C3N-04124 C3N-04127 C3N-04155 C3N-04162 Amplification Peak 1 1q21.2 chr1:119990001-154760000(probes 11919:12386) chr1:150530001-150630000(probes 11972:11982) chr1:150370001-152759999(probes 11968:12182) 0.044612 0.044612 0: t<0.1; 1: 0.10.9 1 0 1 0 0 1 0 0 1 1 1 2 0 0 1 0 1 1 1 1 0 1 0 2 0 1 0 1 1 0 0 1 0 2 1 1 0 1 1 0 0 0 1 1 0 0 0 1 1 1 1 1 1 0 0 2 0 0 0 1 0 1 1 0 0 1 1 1 1 2 1 0 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 1 1 1 0 1 1 1 1 2 2 2 0 0 1 Amplification Peak 2 3q26.31 chr3:141990002-186660000(probes 59488:63995) chr3:172370001-172660000(probes 62501:62538) chr3:93660001-198295559(probes 54295:65092) 5.6928e-40 0.00088862 0: t<0.1; 1: 0.10.9 2 1 2 2 2 0 1 1 1 2 2 2 1 1 1 1 1 1 1 2 0 2 0 2 1 1 1 1 1 1 0 2 1 2 1 2 0 2 1 1 1 1 2 1 2 1 1 2 1 1 2 2 2 2 1 2 0 2 2 2 0 2 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 2 0 1 2 1 2 2 2 1 2 2 1 1 0 2 1 1 2 2 2 0 1 2 2 2 2 2 2 1 2 2 Amplification Peak 3 3q26.33 chr3:181680002-182310000(probes 63478:63562) chr3:181960001-181980000(probes 63515:63518) chr3:93660001-198295559(probes 54295:65092) 1.6828e-49 1.1375e-37 0: t<0.1; 1: 0.10.9 2 1 2 2 2 0 1 1 1 2 1 2 1 1 1 1 1 2 1 2 0 2 0 2 1 1 1 1 1 1 0 2 1 2 1 2 0 2 1 1 1 1 2 1 2 2 1 2 1 2 2 2 1 2 1 2 0 0 2 2 1 2 1 1 1 2 2 1 2 1 1 1 2 1 2 1 1 2 0 1 2 1 2 2 2 0 2 2 1 1 0 2 1 1 2 2 2 0 1 2 2 1 2 0 2 1 2 2 Amplification Peak 4 4q12 chr4:53490002-56719999(probes 70010:70382) chr4:55470001-55520000(probes 70240:70245) chr4:52770001-57179999(probes 69927:70437) 0.0047104 0.0047104 0: t<0.1; 1: 0.10.9 1 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 2 2 0 0 0 0 Amplification Peak 5 5p15.2 chr5:1-16059999(probes 83239:84625) chr5:13680001-14540000(probes 84445:84533) chr5:8530001-14680000(probes 83952:84549) 0.034723 0.034723 0: t<0.1; 1: 0.10.9 2 1 2 1 1 1 1 2 1 2 1 0 2 0 2 2 1 2 1 2 0 1 1 1 2 1 1 2 0 2 0 1 1 2 0 1 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 2 1 0 1 1 2 2 1 1 1 1 0 2 1 1 1 0 1 2 1 1 1 1 1 1 1 2 1 2 1 2 2 0 1 1 1 1 1 1 1 1 1 1 2 1 0 0 1 1 1 0 1 0 2 1 Amplification Peak 6 6p12.2 chr6:52450001-53509999(probes 105736:105848) chr6:52800001-52880000(probes 105770:105779) chr6:52800001-52909999(probes 105770:105782) 0.16126 0.16126 0: t<0.1; 1: 0.10.9 0 0 0 1 1 0 0 1 0 1 0 2 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 2 1 1 0 1 0 1 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 1 1 Amplification Peak 7 7p11.2 chr7:54410001-55370000(probes 122270:122377) chr7:55240001-55270000(probes 122362:122365) chr7:54190001-55739999(probes 122246:122418) 0.0025739 0.0031777 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 1 1 1 1 0 0 1 2 1 0 1 1 1 0 0 0 1 0 1 1 0 0 0 1 1 1 0 1 0 2 1 1 1 0 1 1 0 1 0 1 0 1 0 1 0 0 0 2 1 0 0 1 0 1 0 0 1 0 1 0 0 0 1 1 0 1 2 2 0 2 1 0 1 0 1 1 0 1 1 0 1 0 0 1 Amplification Peak 8 7q21.3 chr7:93400001-97300000(probes 125267:125724) chr7:96470001-96520000(probes 125628:125633) chr7:94720001-97060000(probes 125425:125698) 0.04327 0.047362 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 1 1 0 0 2 0 0 0 0 0 2 1 1 0 1 0 1 2 1 0 2 0 0 1 1 0 0 1 2 1 0 0 1 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 1 0 2 0 1 1 0 0 1 0 2 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 0 2 0 1 1 1 1 0 0 1 1 1 0 1 0 0 0 1 1 1 0 1 0 1 1 Amplification Peak 9 8p11.23 chr8:38280002-38430000(probes 135168:135186) chr8:38300001-38310000(probes 135171:135172) chr8:35490001-46570000(probes 134804:135774) 2.7299e-26 2.7299e-26 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 0 2 2 2 2 0 2 0 2 2 0 1 0 0 0 0 1 2 0 0 2 2 0 0 1 0 0 1 2 1 0 2 1 2 2 2 0 1 2 0 0 2 0 0 0 0 1 0 0 0 0 2 0 2 2 0 0 2 2 1 0 0 2 0 2 0 1 0 0 2 1 1 0 0 0 2 2 1 2 1 1 2 0 1 0 1 1 2 1 1 0 0 1 2 2 2 0 1 2 0 1 Amplification Peak 10 8q24.21 chr8:127290002-127490000(probes 144353:144377) chr8:127350001-127400000(probes 144359:144364) chr8:97040001-145138636(probes 141149:146056) 1.6582e-08 1.6582e-08 0: t<0.1; 1: 0.10.9 1 1 1 1 0 0 0 2 1 1 2 2 1 1 1 1 1 2 1 1 0 0 0 1 2 1 1 1 1 0 0 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 0 1 0 2 1 0 2 1 1 1 0 1 1 0 1 2 0 1 1 1 2 0 1 2 1 0 0 0 0 1 2 1 1 1 1 1 1 1 2 0 2 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 2 1 1 1 0 1 Amplification Peak 11 9p24.3 chr9:1-789999(probes 146057:146062) chr9:1-40000(probes 146057:146061) chr9:1-809999(probes 146057:146064) 0.059934 0.14884 0: t<0.1; 1: 0.10.9 0 1 1 1 0 0 0 0 1 1 1 1 1 0 0 0 1 1 1 0 0 1 0 1 1 1 0 1 0 0 0 1 1 2 1 0 0 0 0 1 1 0 1 1 0 1 0 1 0 0 1 1 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 1 0 1 1 0 0 1 0 0 1 0 0 1 1 0 0 0 1 0 1 1 Amplification Peak 12 9p13.3 chr9:33280002-37070000(probes 149112:149557) chr9:36220001-36290000(probes 149452:149460) chr9:35260001-37090000(probes 149334:149559) 0.0035397 0.33049 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 2 0 0 2 0 0 0 1 2 0 1 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 2 0 0 0 Amplification Peak 13 9q34.3 chr9:138250002-138394717(probes 157023:157039) chr9:138260001-138290000(probes 157024:157027) chr9:138260001-138394717(probes 157024:157039) 0.10445 0.10445 0: t<0.1; 1: 0.10.9 1 0 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 1 1 0 1 1 0 0 1 2 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 1 0 1 1 0 1 1 0 1 1 0 1 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 1 0 1 1 Amplification Peak 14 11q13.3 chr11:69700001-69820000(probes 176310:176327) chr11:69750001-69760000(probes 176316:176317) chr11:68680001-74379999(probes 176183:176901) 3.9769e-18 3.9769e-18 0: t<0.1; 1: 0.10.9 2 0 0 0 0 0 0 0 1 0 1 2 2 0 1 0 0 2 2 0 0 0 0 1 1 0 0 0 0 0 1 1 1 2 0 0 0 2 0 0 0 0 0 2 0 0 0 0 1 1 1 1 2 1 1 0 1 2 0 0 1 2 0 0 0 0 0 0 0 2 2 0 0 1 0 1 1 0 1 0 0 2 0 0 0 0 0 0 1 1 1 0 1 0 0 2 0 0 1 1 0 0 2 2 0 0 0 2 Amplification Peak 15 12p12.1 chr12:24720002-25349999(probes 185506:185543) chr12:25320001-25340000(probes 185540:185542) chr12:24730002-25380000(probes 185507:185547) 0.025483 0.025483 0: t<0.1; 1: 0.10.9 1 0 0 0 0 1 0 0 2 0 1 2 0 0 1 1 0 2 1 0 0 1 0 0 1 1 0 1 1 0 0 1 0 0 1 0 0 0 0 1 1 0 1 1 1 0 0 1 1 2 2 1 1 1 1 1 1 0 1 1 1 2 0 1 0 1 0 1 0 2 1 0 1 0 0 1 0 1 1 1 1 2 1 0 0 2 1 1 1 0 1 2 0 1 0 1 1 1 0 2 2 1 0 1 1 1 0 0 Amplification Peak 16 13q34 chr13:112570001-114080000(probes 207062:207184) chr13:113220001-113370000(probes 207111:207128) chr13:112580001-114090000(probes 207063:207186) 0.031886 0.031886 0: t<0.1; 1: 0.10.9 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 Amplification Peak 17 14q13.3 chr14:36420001-38070000(probes 210659:210874) chr14:37300001-37320000(probes 210779:210781) chr14:37280001-37520000(probes 210775:210806) 0.16403 0.16403 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 1 1 2 2 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 0 0 1 0 2 1 0 0 1 2 0 Amplification Peak 18 15q26.3 chr15:101940002-101991189(probes 227414:227422) chr15:101950001-101960000(probes 227415:227416) chr15:101940001-101991189(probes 227413:227422) 0.019099 0.019099 0: t<0.1; 1: 0.10.9 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 0 1 1 1 0 1 1 0 0 0 1 1 0 0 0 1 1 1 1 0 0 1 2 0 0 1 2 0 1 1 1 0 1 0 0 1 1 1 0 1 1 0 0 1 0 0 0 2 1 1 1 0 0 1 1 1 0 1 1 1 0 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 1 Amplification Peak 19 17q25.3 chr17:81880002-82099999(probes 241816:241847) chr17:81980001-82050000(probes 241831:241838) chr17:81890001-82119999(probes 241817:241851) 0.045839 0.045839 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 1 0 0 2 1 1 0 0 1 1 1 0 0 1 0 1 1 1 0 1 1 0 0 1 1 1 0 1 1 0 1 0 0 0 2 1 2 1 1 0 1 1 0 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 1 Amplification Peak 20 19p13.3 chr19:1-280000(probes 249184:249196) chr19:90001-279999(probes 249195:249195) chr19:1-300000(probes 249184:249198) 0.067054 0.067054 0: t<0.1; 1: 0.10.9 1 1 1 1 0 0 0 1 1 1 1 1 0 0 1 0 1 1 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 2 1 0 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 0 1 1 0 0 1 0 0 1 1 1 0 1 1 Amplification Peak 21 19q13.11 chr19:33190001-33390000(probes 252167:252191) chr19:33240001-33280000(probes 252174:252178) chr19:28180001-40450000(probes 251556:253017) 3.627e-05 3.627e-05 0: t<0.1; 1: 0.10.9 1 1 1 2 2 1 0 0 0 1 1 0 1 0 1 0 0 2 1 1 0 1 0 1 0 1 0 0 0 1 0 1 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 0 0 0 1 1 2 0 0 1 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 2 0 1 1 1 1 0 2 0 1 1 0 1 0 1 1 1 0 1 1 0 0 1 1 1 2 2 1 0 2 0 Amplification Peak 22 19q13.43 chr19:58360002-58617616(probes 254683:254688) chr19:58370002-58617616(probes 254684:254688) chr19:58370002-58617616(probes 254684:254688) 0.17337 0.17337 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 0 1 0 1 0 1 1 1 0 1 1 0 1 0 0 0 1 0 1 0 1 0 2 0 0 0 1 0 1 2 0 0 0 1 0 0 0 2 1 0 1 0 0 1 1 1 2 0 0 0 1 0 0 1 0 1 1 1 1 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 1 1 1 1 2 0 0 0 1 0 1 0 Amplification Peak 23 20q11.21 chr20:31300002-32360000(probes 257191:257319) chr20:31890001-31980000(probes 257264:257273) chr20:31250001-34830000(probes 257182:257619) 0.0079438 0.0079438 0: t<0.1; 1: 0.10.9 1 1 1 0 1 0 0 2 2 1 1 0 0 0 1 0 0 0 1 0 0 1 1 1 2 1 1 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 1 1 0 1 0 1 1 0 2 1 1 1 1 1 0 2 1 0 1 1 1 1 0 1 0 0 0 2 2 0 1 1 0 1 0 1 1 1 1 1 1 2 0 0 1 2 1 1 1 0 1 1 0 0 2 0 0 1 1 1 1 0 1 1 1 2 Amplification Peak 24 21q21.1 chr21:14570001-18980000(probes 262065:262527) chr21:16130001-16180000(probes 262213:262218) chr21:16050001-17700000(probes 262203:262388) 0.056707 0.056707 0: t<0.1; 1: 0.10.9 0 0 1 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 1 Amplification Peak 25 22q11.22 chr22:18120001-24500000(probes 266985:267077) chr22:18130001-23480000(probes 266986:267007) chr22:18130001-23510000(probes 266986:267010) 0.16403 0.16403 0: t<0.1; 1: 0.10.9 0 1 1 1 0 0 0 2 0 2 0 2 0 0 0 1 1 0 1 2 0 1 1 1 1 1 1 1 0 0 0 0 0 2 0 0 0 0 0 1 0 1 1 1 1 0 0 0 1 1 0 0 0 1 1 1 0 1 1 1 0 0 1 1 0 1 2 0 0 0 0 0 1 0 0 0 1 1 1 0 2 1 1 2 0 0 1 1 0 0 0 0 1 1 1 0 2 0 0 0 1 0 0 1 0 1 2 1 Amplification Peak 26 Xp22.33 chrX:1-139999(probes 269641:269658) chrX:1-40000(probes 269641:269645) chrX:1-130000(probes 269641:269657) 0.12667 0.12667 0: t<0.1; 1: 0.10.9 0 1 1 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 1 2 1 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 1 0 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 Amplification Peak 27 Xq22.3 chrX:108110002-108340000(probes 278085:278117) chrX:108230001-108270000(probes 278102:278107) chrX:107910001-108919999(probes 278060:278178) 0.024841 0.024841 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 0 0 0 2 2 2 0 0 0 0 1 1 0 2 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 0 0 2 0 1 2 0 0 0 1 1 1 1 1 0 1 0 0 1 1 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 1 1 2 0 1 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 1 1 1 1 1 0 0 0 1 1 Amplification Peak 28 Yq11.223 chrY:20160002-20190000(probes 284335:284338) chrY:20170001-20180000(probes 284336:284337) chrY:20150001-20300000(probes 284333:284353) 0.067054 0.067054 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 0 0 1 0 0 Deletion Peak 1 1p21.1 chr1:100730002-118889999(probes 9984:11800) chr1:101790002-101859999(probes 10104:10113) chr1:94360001-149939999(probes 9289:11922) 9.2609e-06 9.2609e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 0 0 1 1 1 1 1 0 0 0 1 1 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 1 1 Deletion Peak 2 2q22.1 chr2:140570002-142879999(probes 34733:35041) chr2:140230001-142150000(probes 34685:34965) chr2:140940001-141450000(probes 34786:34865) 0.00031701 0.001434 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 Deletion Peak 3 2q37.3 chr2:207760001-242193529(probes 41835:45392) chr2:241520002-242150000(probes 45384:45385) chr2:212270001-242185146(probes 42318:45390) 0.0033518 0.027601 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 Deletion Peak 4 3p13 chr3:44620001-87989999(probes 49330:53628) chr3:70940002-71600000(probes 51917:51984) chr3:44660001-93769999(probes 49334:54311) 5.3355e-05 0.00065358 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 Deletion Peak 5 3p11.1 chr3:81090001-94010000(probes 52919:54318) chr3:89090002-89419999(probes 53759:53793) chr3:44660001-93769999(probes 49334:54311) 0.0016725 0.03693 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 0 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 1 1 1 0 0 1 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 1 0 1 1 1 1 0 0 1 1 0 1 0 1 0 0 1 1 0 1 1 1 0 0 1 Deletion Peak 6 4p16.3 chr4:1-44630000(probes 65093:69439) chr4:2-1229999(probes 65094:65111) chr4:1-14910000(probes 65093:66403) 0.0045054 0.0046896 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 0 1 0 1 1 0 0 1 0 0 1 0 1 0 1 0 1 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 1 0 0 0 1 1 1 1 0 1 1 1 0 0 1 1 1 1 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 1 1 1 0 0 1 1 0 0 1 0 1 0 1 0 1 1 0 0 0 1 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 Deletion Peak 7 4q35.2 chr4:153780001-190179999(probes 80155:83231) chr4:186580001-186740000(probes 83097:83114) chr4:158900001-190130000(probes 80673:83226) 0.00030542 0.00030528 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 1 1 1 1 1 1 0 1 0 0 0 0 1 1 1 0 1 0 1 1 1 0 0 1 1 0 0 1 1 1 1 0 1 1 1 1 0 1 1 1 0 0 1 0 1 0 0 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 1 Deletion Peak 8 5q12.1 chr5:58950002-60490000(probes 88585:88765) chr5:58950002-60490000(probes 88585:88765) chr5:59540001-60610000(probes 88644:88778) 0.00013501 0.00013501 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 0 1 1 1 0 0 1 1 0 1 1 1 0 0 0 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 0 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 Deletion Peak 9 6q22.1 chr6:72210001-170805979(probes 107389:117073) chr6:115630001-115659999(probes 111765:111768) chr6:115590001-115660000(probes 111758:111769) 0.02892 0.027601 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 0 1 1 0 0 1 1 Deletion Peak 10 8p23.2 chr8:2130002-6410000(probes 131872:132098) chr8:2880002-5009999(probes 131877:132049) chr8:80002-37499999(probes 131753:135056) 1.5115e-15 1.5115e-15 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 0 1 0 0 0 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 Deletion Peak 11 9p21.3 chr9:21860002-22449999(probes 147915:147994) chr9:21960001-22000000(probes 147929:147936) chr9:40001-32100000(probes 146062:148964) 3.342e-35 3.342e-35 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 0 1 0 1 0 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 Deletion Peak 12 10q23.31 chr10:87850002-88280000(probes 165220:165273) chr10:87860001-87980000(probes 165221:165236) chr10:87110002-89480000(probes 165176:165390) 1.1666e-07 1.1666e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 0 1 0 0 1 1 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 0 0 1 1 0 1 0 0 1 0 1 0 1 1 0 1 0 Deletion Peak 13 11p15.5 chr11:1-45099999(probes 169848:174462) chr11:2110002-2159999(probes 170060:170064) chr11:2030001-2159999(probes 170049:170064) 0.099293 0.096313 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 1 0 1 0 1 0 0 0 1 1 0 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 1 1 0 0 0 1 0 1 1 0 0 0 1 1 0 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 1 Deletion Peak 14 11q22.3 chr11:70460001-135086622(probes 176418:183111) chr11:106660002-107030000(probes 180239:180279) chr11:106830001-106940000(probes 180256:180269) 0.14148 0.13804 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 1 1 Deletion Peak 15 13q11 chr13:1-18870000(probes 195988:197901) chr13:18190001-18249999(probes 197867:197873) chr13:17420001-18389999(probes 197774:197892) 4.3658e-06 0.00010721 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 1 1 0 1 0 1 0 0 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 1 0 1 1 Deletion Peak 16 13q14.2 chr13:35450001-69709999(probes 199421:202587) chr13:48290002-48500000(probes 200719:200747) chr13:44780001-54470000(probes 200352:201221) 0.00029273 0.0019411 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 1 0 1 0 1 1 1 0 1 1 0 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 0 1 0 1 0 1 1 1 1 0 1 1 0 0 1 Deletion Peak 17 14q11.2 chr14:1-20069999(probes 207214:209043) chr14:18210001-20050000(probes 209041:209042) chr14:17200001-20079999(probes 208939:209044) 3.2018e-07 3.2976e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 Deletion Peak 18 17p11.1 chr17:21290002-27129999(probes 235889:236375) chr17:21400001-22740000(probes 235898:235899) chr17:120001-26739999(probes 234119:236329) 2.8668e-11 2.8824e-11 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 1 1 0 1 1 0 0 0 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 1 1 1 0 0 1 0 0 1 1 1 0 1 1 Deletion Peak 19 18q22.1 chr18:40090002-80373285(probes 245455:249183) chr18:65520002-66120000(probes 248105:248106) chr18:52860001-80373285(probes 246792:249183) 0.0015562 0.0015921 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 1 0 1 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 Deletion Peak 20 19q11 chr19:1-58617616(probes 249184:254688) chr19:23860001-27759999(probes 251508:251509) chr19:23870001-27769999(probes 251509:251510) 0.22668 0.22903 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 21 21p11.2 chr21:7820002-8439999(probes 261614:261704) chr21:8200002-8420000(probes 261675:261702) chr21:7960001-8720000(probes 261635:261752) 3.9897e-07 3.906e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 1 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 1 1 0 0 1 1 1 0 1 1 1 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 1 1 0 0 1 1 1 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 0 1 1 1 1 0 1 1 0 0 0 0 1 0 1 0 1 1 0 0 Deletion Peak 22 21q22.3 chr21:36040002-46709983(probes 264221:265195) chr21:44970001-45020000(probes 265102:265106) chr21:44990001-45010000(probes 265104:265105) 0.041296 0.041732 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 0 0 1 1 0 1 1 1 1 0 1 0 1 1 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 Deletion Peak 23 22p11.2 chr22:10960001-16940000(probes 266316:266861) chr22:11890001-11960000(probes 266455:266467) chr22:11730001-12170000(probes 266430:266502) 0.0017517 0.0016842 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 1 1 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 1 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 Deletion Peak 24 Xq21.1 chrX:1-156040895(probes 269641:282148) chrX:250001-155969999(probes 269674:282134) chrX:1-3269999(probes 269641:269677) 0.00029273 0.00030528 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 25 Xq22.3 chrX:108140002-108790000(probes 278090:278161) chrX:108430001-108790000(probes 278132:278161) chrX:108540001-108559999(probes 278147:278148) 0.051228 0.10605 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 26 Yq11.23 chrY:14050001-56959204(probes 283680:288079) chrY:24820001-24920000(probes 284849:284860) chrY:11750001-57227415(probes 283431:288107) 3.6755e-09 3.4739e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 0 1 0 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 0 1 0 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 0 0 1 0 0 1 1 1 0 1 1 Amplification Peak 1 - CN values 1q21.2 chr1:119990001-154760000(probes 11919:12386) chr1:150530001-150630000(probes 11972:11982) chr1:150370001-152759999(probes 11968:12182) 0.044612 0.044612 Actual Copy Change Given 0.30706 -0.012374 0.1416 0.026417 0.023046 0.29351 0.013648 0.024951 0.46556 0.19629 0.1222 1.5191 0.07983 0.019506 0.35079 0 0.11957 0.79915 0.14069 0.10956 0.016831 0.29248 0.02434 1.0019 -0.27555 0.17722 -0.0037488 0.26236 0.30566 0.032024 0.010966 0.27295 0.061413 1.2419 0.10775 0.35292 0.069772 0.43549 0.36195 0.022322 0.083419 0.033225 0.27724 0.21719 0.048539 0.0016316 0.0053232 0.52876 0.11752 0.42344 0.55479 0.47731 0.11103 0.097051 -0.10097 1.5409 0.010106 0.036071 0.0039991 0.37254 0.086045 0.6947 0.18056 0.020185 0.050661 0.75304 0.23645 0.30817 0.50568 3.6569 0.66971 0.01884 0.69342 0.073495 0.00919 -0.033745 -0.026119 0.4164 0.075795 0.05092 0.21411 0.026266 0.11437 0.013152 0.090953 0.15688 -0.20216 0.57731 0.046708 0.2422 -0.02663 0.072525 -0.014281 0.079215 0.11311 0.35686 0.27106 0.012889 0.52658 0.4738 0.40195 0.75942 0.97848 2.8817 2.2143 -0.023512 0.058975 0.27429 Amplification Peak 2 - CN values 3q26.31 chr3:141990002-186660000(probes 59488:63995) chr3:172370001-172660000(probes 62501:62538) chr3:93660001-198295559(probes 54295:65092) 5.6928e-40 0.00088862 Actual Copy Change Given 2.1108 0.83301 1.6953 1.1918 0.97663 0.014924 0.18633 0.69385 0.58009 0.92402 0.90045 0.90233 0.53124 0.81977 0.88131 0.38468 0.63183 0.81059 0.31632 3.1623 0.037366 1.2985 0.030559 1.986 0.31608 0.65563 0.13738 0.88489 0.72584 0.65865 -0.011889 1.0105 0.79839 2.7062 0.50623 0.99201 0.02221 1.3406 0.37371 0.17503 0.5443 0.20657 2.3126 0.24642 2.8391 0.82409 0.10572 2.3758 0.2981 0.755 1.5383 1.0747 3.6569 1.1592 0.32978 3.6569 0.0040631 2.8782 1.2089 1.72 0.044701 1.6266 0.86621 0.27178 0.10334 3.1372 0.66663 0.6396 1.7979 0.87752 1.4971 0.47872 0.71228 0.10367 2.2687 0.40978 0.41167 2.4935 0.033685 0.1746 3.1341 0.56762 1.3382 1.1373 2.9827 0.51619 0.90936 1.5379 0.49604 0.52911 -0.011257 1.568 0.24485 0.55959 2.4078 1.5002 1.2609 0.044108 0.41869 2.0867 3.6569 1.0679 3.1245 1.4109 3.3449 0.16572 3.6569 1.2794 Amplification Peak 3 - CN values 3q26.33 chr3:181680002-182310000(probes 63478:63562) chr3:181960001-181980000(probes 63515:63518) chr3:93660001-198295559(probes 54295:65092) 1.6828e-49 1.1375e-37 Actual Copy Change Given 2.1108 0.83301 1.8524 1.1644 0.98693 0.014924 0.18633 0.69385 0.75152 1.618 0.87351 3.6569 0.53124 0.81977 0.88131 0.38468 0.22633 3.6569 0.31632 3.2542 0.037366 1.2985 0.030559 1.9682 0.31608 0.65563 0.13738 0.76624 0.72584 0.61702 -0.011889 1.4328 0.79839 2.7062 0.50623 1.1093 0.01727 1.3474 0.40109 0.17503 0.57012 0.20657 3.6569 0.29472 2.8391 1.4091 0.10572 2.8201 0.77725 3.0326 1.566 1.0747 0.57228 2.8846 0.32978 3.6569 0.0079847 0.02085 1.4072 1.693 0.23667 1.6693 0.86621 0.27178 0.10334 3.0849 1.8038 0.62453 1.6709 0.36607 0.7665 0.47872 3.6569 0.10367 1.4198 0.40093 0.42737 2.4157 0.033685 0.1746 3.6569 0.56762 3.6104 3.4322 2.1157 0.082715 0.90936 1.5379 0.49604 0.52911 -0.011257 1.5393 0.24485 0.55959 3.3461 2.2544 1.2778 0.044108 0.46112 2.0867 3.6174 0.89652 3.6569 -0.24195 3.1722 0.16572 3.6569 1.2778 Amplification Peak 4 - CN values 4q12 chr4:53490002-56719999(probes 70010:70382) chr4:55470001-55520000(probes 70240:70245) chr4:52770001-57179999(probes 69927:70437) 0.0047104 0.0047104 Actual Copy Change Given 0.32752 0.14582 -0.14105 -0.010051 -0.01901 0.0042406 -0.15361 0.55762 0.37395 -0.038175 -0.29063 -0.17243 0.35691 -0.012475 -0.1225 -0.036276 -0.090445 -0.4711 0.73471 -0.0063528 -0.015847 0.81034 0.00042422 -0.25837 0.0019705 -0.036826 -0.0090372 0.214 -0.27795 -0.51754 0.039409 0.87882 -0.095879 -0.055305 -0.16359 -0.069913 -0.35824 0.27717 -0.17338 -0.13676 0.72635 -0.0083442 -0.28807 -0.16957 0.70243 0 -0.038912 -0.54305 0.085705 -0.33222 0.026431 -0.14471 -0.098631 0.061913 -0.10453 -0.40821 -0.0096467 -0.14989 -0.042085 -0.24176 -0.13081 3.6569 -0.15748 -0.12872 -0.71655 3.6569 -0.022951 0.026871 -0.39917 -0.025973 0.023549 0.0079793 -0.14774 0.010378 -0.015294 0.017732 -0.24484 -0.45771 -0.02859 0.041423 -0.04241 0.17993 0.1596 0.015696 -0.67641 -0.14239 -0.30368 -0.045819 0.78861 -0.00042641 -0.089233 -0.64407 0.014913 0.19582 0.043025 0.0047751 -0.34909 0.00098215 -0.28727 0.24652 -0.41909 0.10174 3.6569 2.6907 -0.16464 -0.077757 0.015238 -0.41659 Amplification Peak 5 - CN values 5p15.2 chr5:1-16059999(probes 83239:84625) chr5:13680001-14540000(probes 84445:84533) chr5:8530001-14680000(probes 83952:84549) 0.034723 0.034723 Actual Copy Change Given 1.0476 0.64685 1.0927 0.29027 0.14466 0.19435 0.41144 2.0065 0.42728 1.2618 0.83387 -0.18533 1.2922 -0.014796 2.1229 0.978 0.567 0.92426 0.54869 1.3181 0.055016 0.63085 0.26568 0.84671 0.93392 0.54335 0.1663 1.0046 0.028645 1.0493 0.047022 0.10134 0.58584 2.9807 0.032414 0.19953 0.82523 -0.015017 0.64823 0.37604 0.11719 0.50827 0.24257 0.094081 0 0.10639 0.0079292 0.60691 0.26987 0.24988 0.4743 0.76504 0.44268 0.90366 0.21963 -0.031513 0.13904 0.31715 1.4517 3.6569 0.14282 0.66911 0.79057 0.58574 -0.039344 2.6112 0.422 0.30319 0.40664 -0.28993 0.6916 1.1454 0.4901 0.32329 0.37472 0.6144 0.48673 0.30098 0.46046 1.8038 0.3622 2.3794 0.21133 3.0939 2.279 0.081515 0.84325 0.28519 0.15597 0.81077 0.34174 0.74308 0.50948 0.57241 0.10053 0.3533 1.252 0.15926 0.046977 -0.17191 0.17352 0.1087 0.30449 -0.19904 0.69552 0.095372 2.9031 0.651 Amplification Peak 6 - CN values 6p12.2 chr6:52450001-53509999(probes 105736:105848) chr6:52800001-52880000(probes 105770:105779) chr6:52800001-52909999(probes 105770:105782) 0.16126 0.16126 Actual Copy Change Given -0.47906 -0.047334 -0.28394 0.10602 0.14578 0.0011584 0.015204 0.64337 0.068898 0.30311 -0.011454 0.9766 -0.015808 0.01222 0.081434 0.053291 0.09032 0.16348 -0.0090009 0.11849 0.012897 -0.12493 -0.0004852 0.41634 0.26849 0.14314 -0.0077923 -0.00024363 1.8709 0.065306 -0.018912 -0.19685 -0.18002 0.80938 0.014905 0.11323 0.0091164 0.02137 0.034753 -0.10922 0.06677 -0.0036108 0.013867 0.20753 0.061426 0.37492 -0.062248 3.4397 0.61078 0.50954 0.038226 0.55385 0.070766 0.17111 0.10286 2.4069 0.0004433 0.04732 0.27578 0.56893 0.074136 0.017082 0.088529 -0.027088 -0.69737 -0.03462 0.017735 -0.21537 0.05407 0.79324 0.0027373 0.0019636 0.035271 0.0067841 -0.0010857 0.094052 0.052323 0.15761 -0.40926 -0.020413 2.4322 0.14571 0.41156 0.010723 -0.70127 0.036749 0.0039981 0.36465 0.80103 0.021581 0.11604 0.078813 0 0.055557 -0.014269 -0.001362 -0.12261 -0.0011752 0.32097 -0.14164 0.12954 1.1849 0.041497 0.098535 -0.1586 0.013462 0.86916 0.30934 Amplification Peak 7 - CN values 7p11.2 chr7:54410001-55370000(probes 122270:122377) chr7:55240001-55270000(probes 122362:122365) chr7:54190001-55739999(probes 122246:122418) 0.0025739 0.0031777 Actual Copy Change Given 0.30726 0.14323 0.35131 0.083001 -0.010118 0.0069929 0.0093173 -0.0015635 0.43002 -0.16097 -0.02233 0.78487 -0.1153 -0.012429 -0.1445 0.052201 0.066838 -0.3853 0.12076 0.44033 0.0098039 0.47796 0.01725 -0.010626 0.22241 0.17785 0.11023 0.21175 -0.014018 -0.050413 0.13176 3.6569 0.18745 -0.35963 0.12587 0.21134 0.35751 -0.0034097 0.034412 -0.14207 0.1283 0.017346 0.23765 0.13498 -0.13624 -0.11764 0.0079108 0.34626 0.16947 0.35842 0.040359 0.56491 -0.0056876 2.7209 0.11009 0.54458 0.14948 0.00066448 0.39367 0.40621 0.086325 0.66803 -0.17374 0.13689 0.036626 0.48752 0.010057 0.26933 0.07783 -0.0058515 0 3.6569 0.42501 0.075349 -0.023098 0.75467 -0.34242 0.13605 0.0073721 0.040507 0.73623 -0.2565 0.13366 0.0061085 0.095293 0.023543 0.29694 0.30813 -0.35194 0.10122 1.0725 3.4781 0.0038129 3.6569 0.11439 0.0018067 0.21488 0.066 0.48497 0.24738 -0.017823 0.11063 0.78397 -0.113 0.2622 0.0069357 0.031079 0.31052 Amplification Peak 8 - CN values 7q21.3 chr7:93400001-97300000(probes 125267:125724) chr7:96470001-96520000(probes 125628:125633) chr7:94720001-97060000(probes 125425:125698) 0.04327 0.047362 Actual Copy Change Given 0.37316 0.14145 0.37303 0.092691 0.0271 0.0043468 0.015667 0.63548 0.15502 -0.036664 0.0029516 1.4376 0.077504 -0.0019355 0.067633 0.055419 0.071821 1.552 0.18223 0.10008 0.02465 0.56566 -0.0056139 0.60213 1.0763 0.18304 0.0023706 1.1047 0.041687 -0.52242 0.13362 0.74857 -0.16776 -0.013746 0.12924 1.3253 0.71171 0.03503 0.049036 0.22098 -0.00090415 0.026807 0.30206 0.30025 0.038943 0.019526 0.0083401 0.62174 0.40237 0.41885 0.01974 0.45581 0.020817 0.025333 -0.10598 0.16898 -0.00048296 3.6569 0.012928 0.36041 0.13839 0.013602 0.039537 0.1305 0.020058 1.3383 0.036048 0.061846 0.038013 0.64653 0.026589 0.020914 0.43903 0.08283 0.0064352 0.15147 0.053563 0.26912 0.81852 0.0022924 0.010973 -0.22781 0.18437 0.014975 2.7026 0.035674 0.58636 0.32511 0.22335 0.76319 -0.0033117 0.06143 0.13555 0.46505 0.15938 0.013032 0.61243 0.016739 0.011931 -0.13025 0.15812 0.65777 0.68849 -0.70965 0.21564 0.095759 0.60554 0.33667 Amplification Peak 9 - CN values 8p11.23 chr8:38280002-38430000(probes 135168:135186) chr8:38300001-38310000(probes 135171:135172) chr8:35490001-46570000(probes 134804:135774) 2.7299e-26 2.7299e-26 Actual Copy Change Given 0.23213 -0.20248 -0.31345 -0.052387 0.0024679 -0.0065182 0.015114 0.0017437 1.1708 3.6569 3.6569 3.6569 -0.1234 1.877 -0.26261 1.2932 3.6569 0.055813 0.10749 0.056668 -0.0034096 -0.0024092 -0.068834 0.18439 0.90784 -0.044185 -0.073959 1.0777 1.01 -0.54985 0.035866 0.17817 -0.18621 -0.36212 0.15699 1.8145 0.33601 -0.0028447 3.6569 0.12996 0.97211 3.3421 2.3916 0.0011207 0.2469 3.6569 0.0072278 0.030855 1.591 -0.69257 -0.57211 -0.0084643 0.086447 0.45414 0.093572 -0.013534 -0.0059669 -0.15148 3.6569 -0.1493 2.3508 1.1999 -0.17931 -0.15695 1.8966 2.0209 0.24629 0.043195 -0.4186 3.6569 -0.66461 2.4056 -0.16297 0.12073 -0.41106 -0.18771 1.0958 0.32052 0.49945 -0.12198 -0.41598 0.024116 3.5281 2.7135 0.81309 1.1955 0.28635 0.3121 3.6569 0.0095443 0.78394 0.018859 0.29193 0.50977 2.9506 0.34215 0.23287 0.032716 -0.78538 0.64506 0.95571 2.6983 2.642 -0.79679 0.79018 1.5873 -0.83852 0.7383 Amplification Peak 10 - CN values 8q24.21 chr8:127290002-127490000(probes 144353:144377) chr8:127350001-127400000(probes 144359:144364) chr8:97040001-145138636(probes 141149:146056) 1.6582e-08 1.6582e-08 Actual Copy Change Given 0.49903 0.42406 0.45651 0.29894 -0.023596 0.00619 0.019581 3.6569 0.56993 0.82487 1.115 2.3895 0.10318 0.3866 0.40735 0.49082 0.57885 1.119 0.13916 0.57809 0.014563 0.015083 0.0070284 0.20719 2.4493 0.48342 0.18637 0.75715 0.36863 0.056328 0.055124 0.20378 0.2123 0.020163 0.16656 0.3246 0.33387 0.25945 1.5913 0.1233 0.59365 0.85408 0.54093 0.19019 0.42533 0.48227 0.0039164 0.68723 -0.039693 3.6569 0.20181 -0.12553 3.6569 0.48739 0.1152 0.32796 0.0052955 0.45086 0.25544 0.028963 0.52087 1.5336 -0.13647 0.19033 0.51613 0.21473 1.622 0.070112 0.11175 1.0494 0.74619 0.002312 -0.11061 0.044489 0.012879 0.18694 1.162 0.41197 0.52369 0.39777 0.4162 0.62429 0.39001 0.35211 1.5999 -0.025261 1.2 0.77441 0.65735 0.27753 0.11254 0.14027 0.20459 0.24467 0.12377 0.46995 0.28309 0.057641 -0.37395 0.25111 0.79909 0.3129 2.0698 0.14064 0.10681 0.34618 -0.010258 0.30235 Amplification Peak 11 - CN values 9p24.3 chr9:1-789999(probes 146057:146062) chr9:1-40000(probes 146057:146061) chr9:1-809999(probes 146057:146064) 0.059934 0.14884 Actual Copy Change Given -0.60493 0.70213 0.33904 0.16076 -0.23511 -0.37262 0.083385 -0.64566 0.34074 0.24255 0.64697 0.26307 0.29173 0.014263 -0.24319 -0.17205 0.28257 0.17723 0.1691 0.027774 -0.0085556 0.57813 -0.072337 0.34427 0.26851 0.55244 -0.072622 0.27229 -0.24571 0.057158 -0.10281 0.10547 0.16193 0.98695 0.16776 -0.071953 -0.30878 0.060018 -0.10635 0.65818 0.29574 0.010792 0.31361 0.1209 -0.21611 0.10479 -0.067702 0.21868 -0.032079 -0.11082 0.85735 0.17894 0.143 -0.21951 -0.31811 -1.0796 -0.07676 0.27189 0.32566 -0.025471 0.37137 0.20307 -0.20776 -0.27934 -0.36503 0.25265 0.075068 -0.20512 0.67147 0.42692 0.20472 0.057227 0.24259 0.12638 0.3096 0.4528 0.1044 -0.31585 0.1178 0.13377 0.64213 0.22078 -0.33724 -0.091069 0.11214 0.72885 0.43005 0.34132 0.0029521 0.17288 0.21018 0.01028 -0.17259 0.10256 0.010999 0.0047691 0.63045 -0.089436 -0.64537 0.58897 0.15462 -0.0447 0.027288 0.093053 0.2236 -0.15714 0.47156 0.30131 Amplification Peak 12 - CN values 9p13.3 chr9:33280002-37070000(probes 149112:149557) chr9:36220001-36290000(probes 149452:149460) chr9:35260001-37090000(probes 149334:149559) 0.0035397 0.33049 Actual Copy Change Given 0.14601 0.65223 0.6932 -0.18986 -0.58974 -0.37262 -0.15176 -0.63781 -0.25991 -0.14622 0.50429 0.8944 -0.12697 4.8935e-05 -0.27093 -0.12492 0.042185 0.57258 -0.15926 0.14837 -0.0097705 0.58927 -0.07945 0.29206 -0.3183 0.13483 -0.054276 -0.026751 -0.24752 -0.52971 -0.10288 -0.23509 0.95804 -0.38189 -0.15811 -0.071953 -0.32756 -0.38729 -0.11703 -0.037628 -0.11165 -0.0040564 -0.24648 0.40836 -0.21611 -0.53505 0.0016947 0.81838 -0.027803 0.75042 -0.02123 0.22279 0.026536 -0.072952 0.12342 -0.32738 -0.0065314 -0.099815 -0.30006 -0.040186 -0.12278 0.19388 3.6569 0.011727 0.071596 0.16406 -0.31113 -0.20512 0.018031 -0.59757 -0.69162 -0.34958 -0.42784 0.24257 0.010759 -0.18315 -0.029703 1.6531 -0.44832 -0.15666 2.3007 0.019757 -0.18233 -0.53423 0.75549 0.96971 -0.25615 0.32776 -0.34647 0.23575 0.086489 -0.63691 -0.12574 1.4782 -0.15043 0.0047691 0.40545 -0.084497 -0.32142 -0.14396 -0.45838 -0.28006 -0.50546 -0.76739 3.6569 -0.15668 -0.086942 -0.38217 Amplification Peak 13 - CN values 9q34.3 chr9:138250002-138394717(probes 157023:157039) chr9:138260001-138290000(probes 157024:157027) chr9:138260001-138394717(probes 157024:157039) 0.10445 0.10445 Actual Copy Change Given 0.56628 0.046069 0.26146 0.030973 -0.035633 -0.059245 -0.15782 0.021385 0.25768 0.37612 0.032185 0.50155 -0.015953 0.33389 0.14904 0.07069 0.011714 0.11891 0.16367 0.54232 0.010241 0.31516 -0.042218 0.53407 0.076969 -0.039246 0.044452 0.028953 0.36714 -0.015752 -0.12708 -0.18462 -0.097224 0.55312 -0.16061 0.30482 0.043383 0.32358 0.1604 -0.12806 0.12994 -0.23781 -0.053051 0.12882 -0.14161 0.023915 0.042985 0.51956 0.52712 0.0061133 0.45297 0.47391 0.0067993 -0.063452 0.13433 1.2048 0.039283 -0.0056771 0.29328 0.050351 0.014721 0.61914 0.26277 0.23599 0.079625 0.70886 -0.0095845 0.089274 0.26317 0.088712 0.026297 0.11253 0.21738 -0.097586 0.45056 0.29934 0.028365 0.22949 0.28593 -0.067591 0.3383 0.12682 0.050076 0.63131 0.27631 -0.017327 0.13715 0.86801 0.090263 0.048468 -0.081711 0.2795 -0.12154 0.19891 -0.099098 0.0091348 0.50504 -0.089068 -0.028312 0.68303 -0.057698 0.042375 0.37424 -0.19581 0.10693 -0.18519 0.48524 0.56119 Amplification Peak 14 - CN values 11q13.3 chr11:69700001-69820000(probes 176310:176327) chr11:69750001-69760000(probes 176316:176317) chr11:68680001-74379999(probes 176183:176901) 3.9769e-18 3.9769e-18 Actual Copy Change Given 3.6569 -0.025116 -0.29153 -0.21745 0.039615 0 -0.015513 0.011705 0.16096 -0.17108 0.29373 3.6569 3.6569 0.0065369 0.19013 0.001685 -0.30968 1.7324 3.6569 -0.45427 0.014615 -0.14666 -0.015633 0.12651 0.25266 0 0.056195 -0.011465 -0.064751 -0.049886 0.29481 0.47151 0.21786 1.3694 0.061249 -0.0017 0.033563 3.6569 -0.019281 0.0039726 -0.025173 0.0074934 -0.06194 1.4319 -0.013422 0.055583 -0.0053572 -0.036241 0.27586 0.3331 0.39817 0.36374 2.8632 0.17809 0.11345 -0.35247 0.1878 2.6242 -0.0096163 -0.041764 0.10805 3.6569 0.016505 -0.1423 -0.51237 -0.080312 0.018802 -0.059029 0 1.0976 3.6569 -0.0080557 -0.1575 0.14555 -0.00073521 0.12931 0.11499 -0.069022 0.36304 -0.018583 -0.089292 2.3408 -0.14409 -0.040437 -0.0074081 0.069076 0.05696 -0.023256 0.34827 0.38832 0.27509 0.015542 0.12643 -0.012492 -0.047958 3.6569 -0.3759 0.022666 0.1097 0.23561 -0.41333 0.089336 3.6569 3.6569 0.0042805 0.01354 -0.03856 3.6569 Amplification Peak 15 - CN values 12p12.1 chr12:24720002-25349999(probes 185506:185543) chr12:25320001-25340000(probes 185540:185542) chr12:24730002-25380000(probes 185507:185547) 0.025483 0.025483 Actual Copy Change Given 0.84731 -0.026761 0.055253 0.075601 0.020842 0.47951 0.010189 0.086848 1.0089 -0.14038 0.26672 2.2062 0.0032057 0.015444 0.11131 0.12216 0.087142 3.6569 0.13975 0.095283 0.014761 0.32078 0.0081217 -0.13517 0.29331 0.19281 0.058045 0.77306 0.67163 0.044474 0.034243 0.21042 0.003919 0.055707 0.6653 0.018797 -0.31726 0.0379 0.080662 0.367 0.11865 0.032605 0.55411 0.10462 0.20722 0.00403 0.0097647 0.43712 0.11693 3.6569 3.6569 0.22416 0.15601 0.40345 0.39767 0.76573 0.10044 0.010834 0.2167 0.15687 0.4623 0.90788 -0.22429 0.16875 0.079114 0.53026 0.024261 0.16555 0.043054 1.7919 0.70113 0.0049805 0.16845 0.083637 0.028715 0.37142 0.056034 0.44476 0.44245 0.16542 0.65676 1.3759 0.34443 0.021794 0.0044087 1.0964 0.60645 0.37029 0.31709 -0.064677 0.37545 0.96651 -0.0098072 0.17726 -0.014511 0.38722 0.34127 0.11329 0.023009 1.0326 1.3644 0.35516 -0.4882 0.10687 0.22159 0.17237 0.032025 0.044538 Amplification Peak 16 - CN values 13q34 chr13:112570001-114080000(probes 207062:207184) chr13:113220001-113370000(probes 207111:207128) chr13:112580001-114090000(probes 207063:207186) 0.031886 0.031886 Actual Copy Change Given -0.070081 -0.20894 3.6569 -0.24704 -0.61646 -0.038191 0.0054335 -0.010579 -0.25177 -0.54196 -0.30235 0.67653 -0.1545 -0.0062392 0.033566 -0.17384 -0.48044 0.95614 0.23674 -0.4889 -0.013438 -0.013022 0.0018964 -0.26861 -0.36557 0.13589 -0.072709 -0.050096 -0.26767 -0.10182 -0.048012 -0.27608 -0.037039 0.73539 -0.061993 -0.073968 -0.31936 0.093104 -0.15372 -0.024965 -0.10597 -0.28479 -0.076501 -0.075754 -0.14107 -0.5111 -0.083766 -0.015053 1.7306 0.080948 3.6322 0.66658 -0.12061 0.05528 -0.1033 -0.506 -0.016909 -0.041523 -0.29516 -0.14652 -0.19463 -0.41424 0.079508 -0.024306 0.048127 0.11366 0.37761 -0.055577 -0.1531 -1.2038 -0.69349 -0.36593 -0.46777 3.6569 -0.42479 -0.23632 -0.52095 -0.18253 -0.43567 0.20749 -0.43064 0.15486 -0.29477 -0.014531 -0.749 -0.11848 -0.015609 -0.022453 0.15774 -0.1337 0.2017 -0.010275 -0.15191 0.069935 -0.13315 -0.010617 -0.31404 -0.1204 -0.42153 1.4637 -0.43623 -0.37832 -0.56189 -0.82675 -0.37921 -0.082576 0.073657 -0.13845 Amplification Peak 17 - CN values 14q13.3 chr14:36420001-38070000(probes 210659:210874) chr14:37300001-37320000(probes 210779:210781) chr14:37280001-37520000(probes 210775:210806) 0.16403 0.16403 Actual Copy Change Given 0.14344 0.18517 0.11048 -0.2295 -0.60617 -0.35038 0.011852 0.11242 0.42714 3.6569 1.6662 1.6503 0.10314 -0.22733 -0.27593 -0.0624 0.10894 -0.11709 2.1719 -0.052287 -0.0072272 0.30956 -0.049758 -0.26823 0.0079401 0.38134 0.05283 0.50092 -0.24693 0.022151 0.15989 0.30458 0.025602 -0.34431 0.034987 -0.14662 0.33814 -0.26937 0.13823 0.25685 -0.099886 0.0051669 0.30184 0.0087309 -0.022729 0.5066 0.0016108 -0.0014206 0.095309 0.050913 -0.56717 0.2191 0.028977 0.075403 0.11733 0.46457 -0.0034243 -0.13801 -0.019925 -0.097172 -0.18623 -0.39332 1.3854 0.31925 0.0088387 0.040832 -0.074127 -0.10556 -0.39632 0.017751 0.034302 -0.35103 0.39536 0.41925 0.016363 -0.068084 0.40944 0.063886 0.43124 -0.037785 -0.3844 -0.056288 -0.16841 -0.5386 -0.17067 -0.16978 0.2797 -0.42958 -0.33471 -0.060697 0.084619 -0.61613 0.2789 1.04 -0.022614 0.024211 -0.16269 0.0034506 0.047288 0.32125 -0.37445 0.91346 0.70232 -0.39773 -0.16283 0.11032 1.3749 0.011131 Amplification Peak 18 - CN values 15q26.3 chr15:101940002-101991189(probes 227414:227422) chr15:101950001-101960000(probes 227415:227416) chr15:101940001-101991189(probes 227413:227422) 0.019099 0.019099 Actual Copy Change Given 0.26617 0.36526 0.34154 0.21351 -0.20439 -0.057305 0.01945 -0.42148 -0.022888 0.052394 0.25541 0.22718 0.29167 0.013057 -0.0065219 -0.088308 0.41582 0.014793 0.12145 0.39204 -0.0076366 0.36755 0 0.50453 0.28125 0.31961 0.042563 0.24907 0.34306 0.018813 -0.1061 -0.017523 0.3928 0.53848 -0.048885 0.0066256 0.025518 0.14235 0.29108 0.13158 0.31538 0.02109 0.02596 0.3993 1.0486 -0.02653 -0.0048013 0.24184 0.92387 -0.32779 0.82357 0.2404 0.10138 0.098092 0.10872 -0.0051752 0.0022648 0.25266 0.27238 0.35656 -0.0086503 0.61332 0.45322 -0.030769 -0.059592 0.68986 -0.052807 0.024735 -0.00019563 1.104 0.18854 0.33079 0.55346 -0.019196 -0.0021054 0.21754 0.3386 0.51901 0.098705 0.2712 0.51011 0.17941 0.047343 0.45223 1.1117 0.23945 0.1725 0.31004 0.39718 -0.11387 -0.097997 0.050359 -0.0027718 -0.019152 0.02309 0.03103 0.0086952 0.0001217 0.025274 0.16656 -0.0010794 0.1113 -0.092505 0.16681 0.0032877 0.0071624 0.7712 0.60924 Amplification Peak 19 - CN values 17q25.3 chr17:81880002-82099999(probes 241816:241847) chr17:81980001-82050000(probes 241831:241838) chr17:81890001-82119999(probes 241817:241851) 0.045839 0.045839 Actual Copy Change Given 0.47632 0.30843 0.21504 0.036246 -0.71722 -0.2255 0.024747 0.096288 0.60283 -0.17625 0.0087376 1.6583 0.17538 0.2884 0.0648 0.031815 0.24416 0.19765 0.14085 0.050535 0.0078861 0.18864 -0.0035578 0.73015 0.58058 0.19242 -0.060415 0.27238 0.2993 -0.56693 -0.079899 0.47978 0.32765 0.71663 0.0092738 0.24564 0.72921 0.045612 0.45029 0.078318 0.086966 -0.24479 1.4094 0.25243 1.1197 0.31604 0.10392 0.08991 0.49172 0.69678 0.052103 0.22069 0.10128 0.084615 0.094061 1.0867 0.1802 0.11355 0.18894 0.31737 0.28254 0.44449 0.16187 0.17092 0.15918 0.59777 0.016603 -0.21339 0.52553 -0.061498 0.15658 0.11966 0.58872 0.24112 0.62461 -0.11649 0.27113 0.67985 0.24178 -0.014156 0.543 0.42122 0.20778 0.016145 0.75436 0.11666 0.11383 0.59146 0.00044911 0.19153 0.22851 0.15578 0.18895 0.10209 0.16073 0.099767 0.59056 -0.023749 0.58517 0.72662 0.70762 0.814 0.88821 0.40167 0.17404 0 0.14523 0.52004 Amplification Peak 20 - CN values 19p13.3 chr19:1-280000(probes 249184:249196) chr19:90001-279999(probes 249195:249195) chr19:1-300000(probes 249184:249198) 0.067054 0.067054 Actual Copy Change Given 0.30749 0.16777 0.26639 0.24255 -0.34059 -0.083713 0.018445 0.12859 0.21164 0.41499 0.19308 0.42312 -0.018736 0.012352 0.10346 -0.030563 0.17932 0.20204 0.27047 0.34444 0.008306 0.65823 -0.054478 0.85218 0.15189 0.2146 -0.057402 0.24006 0.20767 0.009159 -0.058941 0.31264 -0.011698 0.46628 -0.14537 0.37767 0.094087 0.33803 0.012915 0.070503 0.14439 -0.22153 -0.094454 0.12287 0.19329 -0.037175 0.011272 0.30845 0.30869 -0.16672 0.44712 0.32711 0.16143 -0.12471 0.10854 0.73098 0.102 -0.15394 0.41902 0.33877 0.28508 0.58424 0.44732 0.11936 0.030423 1.0076 0.16759 -0.1525 0.22778 0.17277 0.11949 0.10169 0.41073 -0.11351 0.44614 0.31514 -0.077101 0.13372 0.049294 0.15091 0.51207 0.12449 0.18274 0.78278 0.14313 0.20194 0.50212 0.48565 0.19847 0.1881 -0.049456 0.1366 -0.020105 -0.046484 0.021118 0.33902 0.54268 -0.077085 -0.074625 0.75565 -0.35488 0.0044715 0.19344 0.29176 0.19143 -0.15258 0.2907 0.26843 Amplification Peak 21 - CN values 19q13.11 chr19:33190001-33390000(probes 252167:252191) chr19:33240001-33280000(probes 252174:252178) chr19:28180001-40450000(probes 251556:253017) 3.627e-05 3.627e-05 Actual Copy Change Given 0.37307 0.13882 0.30603 1.0803 3.6569 0.40528 0.0091995 0.017118 -0.25135 0.31763 0.26388 -0.020205 0.32751 0.011252 0.37217 -0.0079919 0.052879 1.8402 0.23428 0.11891 0.01424 0.28037 0.014706 0.23186 -0.26651 0.52184 0.067843 -0.024619 0.039055 0.58499 0.012483 0.18092 -0.047581 -0.33597 0.15719 0.43632 0.76895 0.027395 0.0049022 0 0.12118 0.026531 0.28538 0.577 0.1919 -0.00092628 -0.00075303 -0.043585 0.095292 0.0036393 0.60736 0.45627 1.4214 -0.011309 -0.1237 0.49237 0.0026701 0.028897 0.056837 0.17877 0.031783 0.035914 0.020972 0.13378 -0.6784 0.33139 -0.013245 0.31082 0.43588 0.044542 -0.69908 -0.025267 0.086889 0.085748 -0.012713 0.31778 -0.0092482 1.4623 -0.051756 0.12539 0.28483 0.5309 0.23572 -0.023209 1.1434 0.06682 0.26906 0.385 0.061295 0.23943 -0.021303 0.73787 0.1372 0.41143 0.084768 0.37932 0.39321 0.034328 -0.024969 0.22724 0.31549 0.68611 3.6569 3.2937 0.44909 -0.03863 3.1888 0.0057341 Amplification Peak 22 - CN values 19q13.43 chr19:58360002-58617616(probes 254683:254688) chr19:58370002-58617616(probes 254684:254688) chr19:58370002-58617616(probes 254684:254688) 0.17337 0.17337 Actual Copy Change Given 0.32415 0.54982 0.27894 0.003494 -0.54427 0.075569 -0.0081655 0.017118 -0.28426 0.23734 -0.067102 -0.023414 0.095734 0.014439 0.16989 -0.0055088 0.077898 -0.53489 -0.041175 0.29503 0.01424 0.52625 0.014706 0.65635 -0.015019 0.55535 0.076266 0.2563 0.59989 0.50905 0.0012079 0.36558 0.31025 -0.35829 0.16002 -0.059131 -0.28337 -0.0313 0.30533 0 0.37054 0.045794 0.51388 -0.040414 1.1623 -0.00053557 -0.00075303 -0.045125 0.72551 -0.32373 0.54063 0.91251 -0.0094738 -0.009792 0.095897 0.34699 0.010737 0.017757 0.040665 1.3998 0.39265 -0.32587 0.26928 -0.014392 -0.66575 0.34703 0.556 0.48433 1.1222 -0.083711 -0.0089107 -0.038599 0.56462 0.084113 0.0085993 0.5628 -0.37609 0.40395 0.19497 0.11641 0.64803 0.4904 0.13959 -0.015391 0.083352 0.063438 0.21701 -0.066883 -0.083569 0.37963 -0.089556 -0.51395 0.11316 -0.29198 0.14377 -0.38829 0.16349 0.11376 0.24515 0.2097 1.1289 -0.19929 -0.55563 -0.77329 0.23181 -0.03863 0.18946 0.059587 Amplification Peak 23 - CN values 20q11.21 chr20:31300002-32360000(probes 257191:257319) chr20:31890001-31980000(probes 257264:257273) chr20:31250001-34830000(probes 257182:257619) 0.0079438 0.0079438 Actual Copy Change Given 0.36312 0.14334 0.40332 0.092078 0.57327 -0.00055035 0.0033653 1.9519 2.5667 0.69538 0.59697 -0.050512 0.095645 0.010176 0.22119 0.091694 0.072444 0.074558 0.24821 0.067982 0.013311 0.54782 0.28674 0.33387 1.1967 0.34183 0.1229 0.25053 -0.0022762 -0.039624 0.064023 0.20847 0.0012726 0.55049 0.029166 0.43829 -0.12291 0.0083501 0.24593 0.36628 0.073611 0.030108 0.22843 0.43802 0.04805 0.15609 0.002891 0.22338 0.24657 0.011254 2.1262 0.5162 0.11774 0.42856 0.10657 0.21678 0.0022606 0.97819 0.82308 0 0.22068 0.39907 0.11705 0.16776 -0.25416 0.82617 0.0077059 -0.05485 0.0076963 2.4109 2.0536 -0.0031835 0.38603 0.26851 -0.0078079 0.20718 0.051139 0.18441 0.85065 0.15723 0.25113 0.60841 0.84786 1.1585 -0.11698 0.051388 0.3671 2.2803 0.11332 0.23015 0.18714 0.018703 0.46078 0.21446 0.025539 -0.007281 2.028 0.0013469 0.02427 0.38661 0.34583 0.37904 0.48357 0.061858 0.21711 0.31774 0.46903 1.1162 Amplification Peak 24 - CN values 21q21.1 chr21:14570001-18980000(probes 262065:262527) chr21:16130001-16180000(probes 262213:262218) chr21:16050001-17700000(probes 262203:262388) 0.056707 0.056707 Actual Copy Change Given -0.47559 -0.20653 0.40272 0.14688 -0.34855 -0.015849 -0.001895 -0.012231 0.16555 -0.16556 0.0040554 3.6569 -0.11398 0.003757 -0.16141 -0.0059212 -0.20002 -0.14977 0.14436 -0.43454 0.0058864 1.4909 -0.031685 -0.27295 -0.088879 -0.025273 0.042595 0.00016514 -0.064022 -0.52536 -0.16199 -0.19157 -0.17939 -0.029811 -0.15778 -0.073516 -0.33311 -0.38477 -0.17063 -0.091871 0.0013032 -0.00381 -0.25543 0.17876 -0.1381 -0.095669 0.16701 -0.015713 0.044562 0.3511 -0.053999 0.54399 -0.11839 -0.077195 0.065852 -0.39437 -0.0053793 0.85536 0.37699 -0.23696 -0.0068006 -0.39225 0.84124 -0.016317 0.83131 -0.046858 -0.0066614 -0.22976 0.031162 2.6263 -0.0036935 -0.33133 -0.15807 -0.12672 0.00023627 0.096348 -0.25389 -0.45579 0.064953 -0.016209 -0.076749 -0.2565 -0.16946 -0.00017079 -0.69995 -0.064193 0.0039876 0.80789 -0.40029 -0.056982 -0.10211 0.058032 -0.027278 -0.46866 -0.0091203 -0.35186 3.3035 -0.038354 0.7855 -0.13084 0.12459 -0.020276 0.014937 0.12632 -0.15581 -0.077406 -0.32514 0.67567 Amplification Peak 25 - CN values 22q11.22 chr22:18120001-24500000(probes 266985:267077) chr22:18130001-23480000(probes 266986:267007) chr22:18130001-23510000(probes 266986:267010) 0.16403 0.16403 Actual Copy Change Given 0.053369 0.14578 0.11471 0.26321 0.0066588 -0.025611 -0.015365 1.3507 -0.15476 1.0713 0.011843 1.7778 0.013184 0.0086603 0.02884 0.27367 0.12707 -0.060738 0.14791 2.6722 0.018107 0.88052 0.11013 0.16711 0.34073 0.75767 0.15184 0.38797 -0.02784 0.046192 -0.1223 0.050408 -0.14091 0.93271 -0.11169 0.070951 -0.15087 0.089413 0.093629 0.15414 0.090486 0.14032 0.65736 0.17865 0.2486 -0.0058244 0.022499 0.0067514 0.10612 0.11173 -0.52077 0.064814 0.012768 0.33712 0.10327 0.68478 0.029228 0.27094 0.26534 0.44822 -0.051201 0.060479 0.28687 0.23276 0.054622 0.52067 3.3784 0.016069 0.07839 -0.55881 0.0015485 0.023556 0.84748 -0.11564 0.014624 -0.305 0.3473 0.43315 0.49566 0.016335 1.0169 0.3318 0.22703 1.1217 -0.16048 -0.057623 0.33103 0.50001 0.063489 -0.041449 -0.12005 0.083433 0.21479 0.46963 0.1314 0.028485 1.0098 0.013188 -0.093834 -0.11853 0.53603 0.033338 0.086564 0.41067 0.020725 0.10954 1.095 0.36817 Amplification Peak 26 - CN values Xp22.33 chrX:1-139999(probes 269641:269658) chrX:1-40000(probes 269641:269645) chrX:1-130000(probes 269641:269657) 0.12667 0.12667 Actual Copy Change Given -0.41453 0.13724 0.60487 -0.27662 -0.56666 0.010845 0.43581 -0.99354 -0.12024 0.16728 -0.29545 -0.11957 0.05393 0.1103 -0.022504 0.12105 0.081402 -0.81023 0.43516 -0.87321 0 0.30706 3.6569 0.64573 0.033064 0.0039603 0.047702 0.72549 0.53338 0.46168 0.018857 -0.21755 0.010658 -0.37127 0.032288 -0.40415 -0.61618 0.074522 -0.091648 0.71516 0.53491 0.16799 0.17136 -1.2929 0.48144 0.49364 -0.063973 0.54174 0.055934 -0.50906 0.46753 2.2102 0.7219 0.23749 0.043469 -0.031155 0.13378 -0.22735 0.0052821 0.13872 0.021838 0.28588 0.15548 -0.11523 0.018005 0.8026 -0.62464 -0.0057128 -0.12464 0.63718 -1.2177 -0.00032828 0.25217 -0.55345 0.19789 0.39889 -0.30055 -0.42777 -0.37563 0.11561 -1.0153 -0.23493 -0.18836 0.1966 0.60454 -0.035707 0.27556 -0.90575 0.15808 -0.19398 -0.060761 0.10331 -0.086948 0.05486 0.1074 -0.36466 -0.2893 -0.0054545 0.51127 0.53204 0.16951 0.62252 -1.0724 0.20756 -0.030851 -0.15291 0.39459 -0.28805 Amplification Peak 27 - CN values Xq22.3 chrX:108110002-108340000(probes 278085:278117) chrX:108230001-108270000(probes 278102:278107) chrX:107910001-108919999(probes 278060:278178) 0.024841 0.024841 Actual Copy Change Given 0.4068 0.80521 0.73441 -0.058034 0.028156 0.018056 -0.023847 -0.027857 -0.12687 3.6569 1.443 3.2034 0.095432 -0.026637 0.083001 -0.0044218 0.21374 0.41459 -0.14748 1.3875 -0.0030933 0.30044 0.0099543 -0.28537 -6.5772e-06 0.75942 0.043624 0.44992 0.012468 0.071233 0.040912 0.14929 0.19811 0.39014 0.13939 0.21558 0.30064 -0.053446 -0.12006 0.70716 0.03959 -0.0050219 3.6569 0.097703 0.14598 1.0033 -0.045952 -0.025732 0.0036881 0.39116 0.46307 0.21872 0.64146 0.46926 -0.32694 0.57945 0.029282 -0.16415 0.15304 0.20206 0.020026 0.57963 0.30813 -0.12776 0.003241 1.9383 0.0076615 0.012372 -0.13108 0.17801 0.02548 -0.0040056 -0.41298 -0.037342 -0.26523 -0.16347 0.37603 0.37695 1.2226 0.087047 0.34278 -0.2417 -0.24593 0.038631 0.084805 0.025551 0.27624 0.31639 0.15217 0.23099 -0.13227 0.013756 0.10772 -0.16238 0.077864 -0.0096699 0.16132 -0.0077251 0.4244 0.58197 0.36236 0.34311 0.57401 0.018243 -0.042528 0.0019076 0.3154 0.71118 Amplification Peak 28 - CN values Yq11.223 chrY:20160002-20190000(probes 284335:284338) chrY:20170001-20180000(probes 284336:284337) chrY:20150001-20300000(probes 284333:284353) 0.067054 0.067054 Actual Copy Change Given 0.29713 0.54555 0.70071 -0.95542 -1.2229 -0.10371 0.25818 -1.2929 -0.29219 0.471 -0.90773 -1.2929 -0.45729 0.36399 2.434 0.095821 -1.0439 -0.25592 -0.42025 -1.2929 -0.053789 0.50462 3.6569 -0.52263 -0.25349 -0.66224 -0.013387 -0.10689 1.5702 -0.40409 -0.16519 -0.68123 -0.29155 -0.59781 -0.13813 -0.30897 -0.82994 -0.43251 0.1057 -0.50309 2.3797 -0.5682 -0.79215 -1.2929 -1.2929 -1.0809 1.9375 -1.1796 -1.2929 -1.0384 0.54748 2.1536 -0.45544 -0.23968 -0.31361 0.085376 -0.43157 -0.6671 -0.83172 -0.67364 -0.49003 0.73082 -0.42674 -0.44374 -1.2929 -0.49875 -0.74611 -0.48526 -0.4748 -1.2929 -1.2929 -0.12069 0.13319 -0.049664 -0.51848 0.54373 -1.0919 -1.2929 -0.45857 -0.29812 -1.2929 1.7122 -0.29922 -1.1786 -0.90913 -0.42791 0.24638 -1.2856 -1.0228 -0.523 -0.52369 0.034455 -0.41348 -0.15528 -0.50755 -0.71815 -1.2929 3.6569 0.40862 -0.98868 0.17402 0.33233 -1.2929 0.01634 -0.77266 0.11846 -1.2929 -1.0853 Deletion Peak 1 - CN values 1p21.1 chr1:100730002-118889999(probes 9984:11800) chr1:101790002-101859999(probes 10104:10113) chr1:94360001-149939999(probes 9289:11922) 9.2609e-06 9.2609e-06 Actual Copy Change Given -0.48963 -0.023041 -0.23914 0.03024 -0.023804 -0.36044 0.014267 -0.020698 -0.20305 -0.14979 -0.14393 -0.13909 -0.1058 0.012217 0.010821 0.00018389 -0.23512 -0.45266 0.0043991 -0.40843 -0.0070379 -0.27272 -0.032071 -0.65312 -0.19649 -0.041107 -0.0033092 0.0051733 -0.27184 -0.036708 -0.02971 -0.19249 0.044123 -0.35395 -0.010627 -0.0011534 -0.30827 -0.35046 0.013327 -0.12725 -0.10183 0.0014741 -0.24386 -0.049638 0.11345 -0.3806 -0.081142 0.017196 0.028302 0.018303 0.57639 0.048473 -0.11059 -0.086459 -0.13732 -0.41345 0.0033185 0.0056061 0.18753 -0.21303 -0.20037 -0.39566 -0.22697 -0.13179 -0.71712 -0.018539 -0.32332 -0.19642 -0.38796 0.57677 -0.67138 0.0091996 0.14592 -0.024589 0.0051347 -0.20116 -0.26864 -0.39479 0.02701 -0.16382 -0.39912 -0.058752 -0.16439 0.0085436 0.095474 -0.072218 -0.0041218 -0.42499 -0.089101 -0.10448 -0.020427 -0.61686 -0.11699 -0.011986 -0.022775 -0.35583 -0.73591 -0.066303 -0.34577 -0.13804 -0.27496 -0.10939 -0.48566 -0.72422 -0.14771 -0.066271 -0.69357 -0.48179 Deletion Peak 2 - CN values 2q22.1 chr2:140570002-142879999(probes 34733:35041) chr2:140230001-142150000(probes 34685:34965) chr2:140940001-141450000(probes 34786:34865) 0.00031701 0.001434 Actual Copy Change Given -1.2929 -0.18933 -0.29118 -0.092626 -0.79986 0.018097 -0.00132 0 -0.21897 0.32183 0.31107 1.2344 0.12842 -0.0034461 -0.24711 0.0097027 -0.0059395 -0.46998 -0.012754 -1.2929 0.01644 -0.010759 0.010743 0.03677 -0.005636 0.18457 0.025608 -0.025338 0.02853 -0.0018935 -0.0089013 0.019458 0.036373 0.24196 0.0043464 0.33649 -0.099666 -0.11355 -0.043847 -0.29598 0.021283 0 0.017921 0.034778 -0.031708 -0.29855 -0.10454 0 -0.063197 -0.30954 -0.56511 -0.062496 -0.078995 -0.084 0.11978 0.065749 0.00080786 0.052208 -0.54632 0.11899 -0.10734 -0.019931 0.18159 -0.021688 0.035285 0.21912 0.0073679 -0.40396 0.026736 -0.56586 0.041631 -0.14231 0.51013 0.10905 0.018202 0.14545 0.20772 -0.22498 -0.43311 0 0.32931 0.12992 -0.17572 0.026031 -0.75133 0 -0.0222 0.29492 0.33725 -0.11584 -0.025341 -0.66103 0.12222 -0.66053 0.21474 0.013283 0.18032 -0.016429 0.032765 0.18946 -1.2596 -0.13868 0 1.6178 0.13177 0.00084857 -0.080772 -0.0033986 Deletion Peak 3 - CN values 2q37.3 chr2:207760001-242193529(probes 41835:45392) chr2:241520002-242150000(probes 45384:45385) chr2:212270001-242185146(probes 42318:45390) 0.0033518 0.027601 Actual Copy Change Given -0.065559 0.13871 0.059665 0 -0.59207 -0.13822 -0.00132 0.0014207 -0.22016 0.20807 0.12469 -0.057294 0.0087183 0.00016695 0.063398 0.027747 -0.46776 -0.1803 -0.080341 -0.089958 0.01644 -0.044206 0.016724 0.39018 -0.040367 0.1806 0.022646 0.26964 0.042347 0.0098411 -0.0089013 -0.016128 0.0065915 -0.0457 0.0028168 -0.084623 0.27378 0.022671 0.0032165 -0.010888 0.01538 0.0029426 -0.041635 -0.13316 -0.20456 -0.29855 -0.087557 -0.079957 -0.15385 -0.21835 0.0017728 0.18233 -0.049349 -0.071667 0.11839 0.41555 -0.0017541 0.047205 -0.043036 0.39543 -0.1167 0.34589 0.17872 0.086076 -0.49766 0.14713 0.0073679 0.0021099 0.0024675 0.01379 -0.50544 -0.0074823 0.30036 0.19392 0.0066422 0.34359 0.31838 -0.1998 -0.44816 0.27299 -0.4164 0.062698 -0.082928 0.0023258 0.01318 0.028495 0.00022049 -0.67178 -0.38848 -0.015174 0.087898 -0.014867 0.13046 -0.26191 -0.14415 0.0021014 0.18976 -0.016429 -0.098026 0.11269 -0.065002 -0.17406 -0.29943 -0.53359 0.1839 -0.00035109 0.01784 -0.42276 Deletion Peak 4 - CN values 3p13 chr3:44620001-87989999(probes 49330:53628) chr3:70940002-71600000(probes 51917:51984) chr3:44660001-93769999(probes 49334:54311) 5.3355e-05 0.00065358 Actual Copy Change Given -0.47839 -0.1955 -0.27787 -0.24471 -0.59999 -0.3648 -0.15183 -0.64967 -0.22559 -0.22011 -0.30057 -0.1682 -0.12366 -0.26327 -0.27925 -0.17042 -0.459 -0.54144 -0.155 -0.44506 -0.0077279 -0.24439 -0.078229 -0.43909 -0.64234 -0.037147 -0.068892 -0.020178 -0.27438 -1.1305 -0.027739 -0.19792 -0.18328 -0.39453 -0.15037 -0.13923 0.0067295 -0.40276 -0.17762 -0.24947 -0.11122 -0.2631 -0.26588 -0.19218 -0.099382 -0.014254 -0.083147 -0.55076 -0.17371 -0.32728 -0.55515 -0.18448 -0.1136 -0.34116 -0.3226 -0.39868 0 -0.14764 -0.28361 -0.2443 -0.16402 1.6497 -0.23127 -0.13539 -0.70581 -0.075322 -0.32871 -0.20748 -0.41609 -1.155 -0.67981 -0.3546 -0.41707 -0.12368 -0.40895 -0.19542 -0.46419 -0.43724 -0.4277 -0.17253 -0.42914 -0.16917 -0.22866 -0.5279 -0.67148 -0.1639 -0.29477 -0.44171 -0.33124 -0.066895 -0.027531 -0.64283 -0.12052 -0.24563 -0.14349 -0.36365 -0.32361 -0.09248 0.32925 -0.15377 -0.48286 -0.012684 -1.0861 -0.76332 -0.13604 -0.15452 -0.41517 -0.36966 Deletion Peak 5 - CN values 3p11.1 chr3:81090001-94010000(probes 52919:54318) chr3:89090002-89419999(probes 53759:53793) chr3:44660001-93769999(probes 49334:54311) 0.0016725 0.03693 Actual Copy Change Given -0.51935 0.14913 0.23653 -0.24471 -0.37015 -0.3648 -0.15183 -0.67533 -0.24803 -0.19899 -0.31555 0.568 0.10174 -0.26327 -0.27925 0.66726 -0.46908 -0.55192 -0.15147 -0.44506 0.0089643 -0.26399 -0.078229 -0.37533 -0.30809 -0.048918 -0.068892 -0.020178 -0.072633 -0.56597 -0.027739 -0.20954 -0.18328 0.42409 -0.15037 -0.086913 -0.0089644 -0.40276 -0.17494 -0.24947 0.16435 0.043304 -0.26147 -0.074122 -0.026648 -0.024529 -0.083147 -0.53982 -0.17371 -0.32728 -0.61436 -0.11776 0.33793 0.44972 0.35077 -1.2929 0 -0.15516 -0.28361 -0.25536 -0.16402 -0.43588 -0.25048 0.14032 -0.73279 -0.047521 -0.33343 -0.20748 -0.38753 -0.58615 -0.67981 0.054439 -0.40919 -0.13409 -0.39145 -0.19542 -0.46419 -0.44226 -0.45636 0.099162 0.40001 -0.084715 -0.23323 -0.54405 3.3429 -0.17494 -0.30395 -0.44171 -0.35005 -0.066895 -0.027531 -0.55593 -0.12052 -0.0095728 -0.14349 -0.0085631 -0.41429 -0.09248 0.39264 -0.14606 -0.47746 -0.010194 -1.2929 -0.73138 -0.74402 0.049763 0.35962 -0.39427 Deletion Peak 6 - CN values 4p16.3 chr4:1-44630000(probes 65093:69439) chr4:2-1229999(probes 65094:65111) chr4:1-14910000(probes 65093:66403) 0.0045054 0.0046896 Actual Copy Change Given -0.10821 0.13218 -0.63875 -0.11415 0.028594 0.25236 -0.15786 -0.020965 -0.59139 -0.20564 -0.039936 -0.066759 -0.12552 -0.030287 -0.095919 -0.11262 0.245 -0.58094 0.096453 -0.47304 -0.012399 -0.30796 0.0025916 -0.41028 0.016558 -0.27693 -0.0059335 -0.058303 -0.29795 0.3223 0.01687 -0.21058 -0.26725 -0.33867 -0.16036 -0.098992 -0.25174 -0.40918 -0.11203 0.18945 -0.080822 -0.0042227 -0.31665 -0.20259 -0.38642 -0.18239 -0.084632 -0.57624 -0.21154 -0.69305 -0.029945 0.69104 -0.25564 -0.11325 -0.12762 -0.88517 0.036153 0.182 -0.32523 -0.28793 0.015977 -0.80866 -0.20262 -0.036261 -0.68014 1.1338 -0.043842 -0.22471 -0.43924 0.58632 -0.066897 -0.33173 -0.48347 -0.11212 -0.014891 -0.053782 -0.2649 -0.49869 -0.095475 0.0036386 -0.30069 -0.034596 -0.28038 -0.043759 -0.7353 0.092065 -0.27169 -0.42025 -0.072949 0.18264 -0.013643 -0.63762 -0.021241 -0.27136 -0.14753 -0.38193 -0.33811 0.0099387 -0.36806 -0.2009 -0.47302 -0.26455 -1.0106 0.098564 -0.22584 -0.16368 -0.51094 -0.14489 Deletion Peak 7 - CN values 4q35.2 chr4:153780001-190179999(probes 80155:83231) chr4:186580001-186740000(probes 83097:83114) chr4:158900001-190130000(probes 80673:83226) 0.00030542 0.00030528 Actual Copy Change Given 0 0.12757 -0.61179 -0.24952 -0.027895 -0.3799 -0.15325 -0.67408 -0.58535 -0.15977 -0.30733 -0.084785 -0.11576 -0.010781 -0.056934 -0.030195 -0.046548 -0.48263 -0.16375 -0.47872 -0.013146 -0.89683 -0.025874 -0.43114 -0.32856 -0.27054 -0.0090372 -0.041279 -0.2748 -0.54176 0.024457 -0.054343 -0.18468 -0.64162 -0.15802 -0.24389 -0.026849 -0.31328 -0.17338 -0.13676 -0.10899 -0.014024 -0.54278 -0.13005 -0.17697 -0.01766 -0.087237 -0.55285 -0.035824 -0.3601 -0.043771 -0.028601 -0.11681 -0.010255 -0.12921 -0.43552 -0.01749 -0.14989 -0.57855 -0.23707 -0.14833 -0.8015 -0.24945 -0.28254 -0.73352 -0.039016 -0.04012 -0.031728 -0.39581 -0.60442 -0.68099 -0.0063592 -0.16117 -0.12739 -0.4021 -0.0023695 -0.25509 -0.47344 0.010396 0.047006 -0.47625 -0.24562 -0.067922 -0.54793 -0.21353 -0.14332 -0.31585 -0.45762 -0.34265 0.11514 -0.12811 -0.63029 -0.12195 -0.25439 -0.13155 -0.013676 -0.347 0.024241 -0.30308 -0.16169 -0.53755 -0.3827 -0.53567 -0.57614 -0.20845 -0.075836 -0.16434 -0.68817 Deletion Peak 8 - CN values 5q12.1 chr5:58950002-60490000(probes 88585:88765) chr5:58950002-60490000(probes 88585:88765) chr5:59540001-60610000(probes 88644:88778) 0.00013501 0.00013501 Actual Copy Change Given -0.48027 -0.19668 -0.26757 -0.43727 -0.59398 -0.35235 -0.15145 -0.61944 -0.22575 -0.52353 -0.29665 -0.032401 -0.11509 -0.25577 -0.28373 -0.17451 -0.4561 0.27547 -0.1415 -0.42324 -0.0073691 -0.2876 -0.063911 -0.34341 -0.61853 -0.24174 -0.065127 0.0017563 -0.27355 -0.51476 0.05018 -0.19577 -0.16549 -0.38555 -0.015162 -0.0841 0.0243 0.017061 -0.17362 -0.13122 -0.10453 -0.26037 -0.24942 -0.14975 -0.038398 -0.17845 -0.017235 -0.53985 -0.14201 -0.31045 -0.54483 -0.47203 -0.11357 -0.21623 -0.096009 -0.21907 0.052861 -0.13408 -0.024338 -0.22268 -0.13179 -0.35227 -0.22602 -0.12733 -0.71046 -0.26129 -0.19535 0.045449 0.034618 -0.60006 -0.68068 -0.34311 -0.39952 -0.13218 -0.37342 0.00026436 0.0081943 -0.43793 -0.4324 0.3776 -0.38905 -0.36931 -0.21739 -0.53467 -0.30805 0.092116 -0.28473 0.76596 -0.8509 0.021133 0 -0.62759 -0.10965 -0.24037 -0.13945 -0.35899 -0.30343 0.0097479 -0.36897 -0.56791 0.0081281 -0.20715 -0.5024 -0.75964 -0.13947 -0.1547 0.3814 -0.11859 Deletion Peak 9 - CN values 6q22.1 chr6:72210001-170805979(probes 107389:117073) chr6:115630001-115659999(probes 111765:111768) chr6:115590001-115660000(probes 111758:111769) 0.02892 0.027601 Actual Copy Change Given -0.098376 0 -0.22913 -0.12397 0.0078614 0.0036651 0.011617 0.0085476 0.049703 -0.0043796 -0.0056699 -0.035287 0.0029207 0 -0.085282 0.051855 0.074933 -0.083532 -0.0040847 -0.36454 0.014454 -0.15544 0.010339 -0.2809 0.23473 -0.024015 -0.0085874 -0.26114 0.008473 0.029859 -0.026138 -0.18697 -0.17473 0.2589 -0.088154 0.056764 -0.33977 0.011749 -0.21643 -0.081469 0.058942 -0.22698 0.0056516 0.026662 0.12508 0.34684 -0.071932 0.4625 -0.29658 -0.30473 0.55466 -0.16517 -0.11468 0.017337 -0.31769 -0.46636 -0.01413 0.12785 0.22394 0.074702 0.060608 0 0.17382 0.008146 -0.70404 -0.024286 0 -0.20915 -0.40017 0.52346 0.0046215 0.0018925 -0.4082 -0.053619 0.010738 0.15475 -0.11114 -0.39618 -0.24299 -0.16164 -0.4666 0.1262 -0.027658 0.0074258 -0.40661 0.033274 -0.0048084 -0.075598 0.3871 -0.10265 0.030816 0.066993 -0.11891 0 0.0074613 0.011798 -0.51506 -0.075693 -0.3694 0.022103 -0.32849 -0.0048114 -0.46997 -0.11942 0.011636 0.0098118 -0.40073 -0.65367 Deletion Peak 10 - CN values 8p23.2 chr8:2130002-6410000(probes 131872:132098) chr8:2880002-5009999(probes 131877:132049) chr8:80002-37499999(probes 131753:135056) 1.5115e-15 1.5115e-15 Actual Copy Change Given -0.42389 -0.229 -0.52312 -0.29962 -0.055207 -0.052913 -0.13615 -0.67879 1.0233 -0.75672 -0.037593 -0.85513 -0.1234 -0.2676 -0.30005 -0.20245 -0.48708 -0.82193 0.051808 -0.53756 -0.0096971 -0.040338 -0.068834 -0.32601 -0.37677 -0.46368 -0.073959 -0.51709 -0.29718 -0.63617 0.035866 -0.24402 -0.21723 -0.38006 0.12237 -0.16223 -0.67083 -0.42762 -0.17635 -0.26052 -0.10995 -0.26503 -0.30476 -0.047308 0.33183 -0.58665 -0.0039525 -0.34502 -0.15701 -0.70583 -0.61109 0.28157 -0.14416 -0.36933 0.047777 -0.95646 -0.0059669 -0.16123 -0.36976 -0.30335 -0.20233 -0.42904 -0.17854 -0.15695 -0.75523 -0.31182 -0.05219 -0.29244 -0.4298 -1.2159 -0.69726 -0.36803 -0.16402 -0.10539 -0.41403 -0.35714 0.71759 -0.7859 -0.48424 -0.13053 -0.44621 0.011221 -0.27893 -0.024287 -0.75123 -0.16162 -0.22388 -0.11692 -0.46818 0.27959 -0.2324 -0.68962 -0.073161 -0.50703 -0.26092 -0.37407 -0.38826 -0.13386 -0.79342 -0.57862 -0.7006 -0.017794 -0.58664 0.05498 -0.023477 -0.16784 -0.80882 -0.098058 Deletion Peak 11 - CN values 9p21.3 chr9:21860002-22449999(probes 147915:147994) chr9:21960001-22000000(probes 147929:147936) chr9:40001-32100000(probes 146062:148964) 3.342e-35 3.342e-35 Actual Copy Change Given -1.2929 -0.51893 -0.45211 -0.29462 -1.2151 -0.37262 -0.31844 -1.2902 -0.2357 -0.14048 0.55675 -1.2929 -0.34993 0.0083951 -0.27093 -0.17205 -0.452 -0.5066 -0.44557 -0.92585 -0.0097705 0.015797 -0.072337 -0.32994 -0.3183 0.13483 -0.072622 -0.50088 -0.24752 -1.0945 -0.30853 -0.59653 -0.58747 -1.1678 -0.15811 -0.071953 -0.65246 -0.37594 -0.3888 -0.39721 -0.11165 -0.0040564 -0.25081 0.014878 -0.21611 -1.039 -0.068359 -0.53228 -0.090753 -0.31159 -0.02123 -0.48337 0.011842 -0.30246 -0.74352 -1.2929 -0.16427 -0.44262 -0.82748 -0.025471 -0.46687 0.19388 -0.77902 -0.13407 -1.2929 -0.26797 -0.31113 -0.20512 -0.39941 -0.60446 -1.2929 -0.72167 -0.42885 -0.18837 0.010759 -0.62237 -0.029703 -0.31585 -0.40437 -0.51345 0.38665 -1.0583 -0.67327 -1.0875 -0.72164 -0.39927 -0.25615 -0.44927 -0.34647 0.16921 -0.34259 -0.63691 -0.11498 -0.20577 -0.15043 0.0047691 -0.31275 -0.1889 -0.64564 -0.13924 -1.2929 -0.76388 -0.4935 0.10442 -0.017925 -0.15714 -0.09519 -0.40531 Deletion Peak 12 - CN values 10q23.31 chr10:87850002-88280000(probes 165220:165273) chr10:87860001-87980000(probes 165221:165236) chr10:87110002-89480000(probes 165176:165390) 1.1666e-07 1.1666e-07 Actual Copy Change Given -0.88956 -0.16824 -0.26466 -0.3948 0.022738 -0.36449 -0.0052337 0.022492 -0.23626 -0.16853 -0.29268 -0.093138 -0.070988 -0.52066 -0.0065221 -0.0040689 -0.38988 -0.035268 -0.0061883 -0.4387 -0.012228 -0.30122 -0.032269 -0.31117 -0.01016 -0.043458 -0.0081782 -0.007322 -0.0097998 -0.0059491 -0.11185 -0.20896 -0.014461 -0.35873 0.031167 -0.14597 -0.30225 0.015174 -0.0027246 0.11357 -0.10729 -0.59989 -0.27332 0.28294 0.079227 -0.14589 -0.080644 -0.061912 -0.015349 -0.32494 -0.55593 -0.19161 0 -0.076294 -0.32636 -0.44525 -0.0038022 0.038882 -0.028659 -0.058302 -0.14477 -0.38844 -0.22797 -0.39723 -1.2929 0.22333 -0.33321 -0.21147 0.018822 -0.060989 0.0082646 0 -0.14705 -0.12512 -0.41035 -0.032769 -0.025915 0.14433 -0.022139 0.0029681 -0.41975 -0.32565 0.018344 0.0096558 -1.2929 -0.16782 -0.27052 -1.2332 -0.34336 -0.11843 0.033601 0.0064009 -0.0044297 -0.2528 -0.14273 0 -0.29664 -0.04089 0.42356 -0.16098 -0.003665 -0.27572 -0.058045 -1.0202 -0.19896 -0.061237 -0.37997 -0.054117 Deletion Peak 13 - CN values 11p15.5 chr11:1-45099999(probes 169848:174462) chr11:2110002-2159999(probes 170060:170064) chr11:2030001-2159999(probes 170049:170064) 0.099293 0.096313 Actual Copy Change Given 0.21381 -0.021717 -0.21548 -0.2467 -0.71556 -0.11195 -0.01134 -0.64575 0.16152 -0.17915 0.28662 -0.027228 -0.095506 -0.28983 -0.2893 -0.0037648 -0.4684 -0.59932 -0.10197 -0.46084 -0.017346 -0.070972 -0.011307 -0.28312 -0.33627 -0.043238 0.057099 0.045753 -0.060705 -0.0016948 -0.061674 -0.095499 -0.14236 -0.29539 0.062644 -0.014534 0.027214 -0.009267 0.1468 -0.14897 0.18987 -0.25969 -0.038602 0.22448 -0.23127 0.0057679 0.00027656 -0.55125 0.251 -0.32192 0.63148 -0.31192 0.059896 -0.15478 -0.32028 -0.030846 0.029753 -0.0072323 -0.29646 -0.030969 -0.19 -0.34358 -0.097013 0.022088 0.04113 -0.11926 -0.32022 -0.064767 -0.16833 -0.015353 -0.6771 -0.34956 -0.13614 -0.045519 0.0044815 0.14124 0.031797 0.10946 -0.50133 0.018961 -0.21334 0.038713 -0.037648 -0.063076 -0.039876 0.065644 -0.28471 -0.025879 -0.28874 -0.011736 0.12472 -0.64643 0.12925 -0.053059 0.20959 0.014406 0.26716 -0.035954 -0.36177 0.11486 -0.38364 -0.20927 -0.57564 -0.31191 0.019662 -0.001551 0.46361 -0.43371 Deletion Peak 14 - CN values 11q22.3 chr11:70460001-135086622(probes 176418:183111) chr11:106660002-107030000(probes 180239:180279) chr11:106830001-106940000(probes 180256:180269) 0.14148 0.13804 Actual Copy Change Given 0.20648 -0.025717 -0.28142 -0.21745 0.015475 -0.0067865 -0.015513 -0.0047688 0.14747 -0.12941 0.28253 -0.03041 -0.10924 0.0039981 0.19013 0.001685 -0.44278 -0.52768 0 0.039186 0.014615 -0.14666 -0.015633 0.15801 -0.32536 0 0.056195 -0.0098464 -0.051693 0.053223 0.097494 -0.20641 0.012555 0.42588 0.061249 -0.0017 -0.30736 -0.40689 0.026461 -0.0050867 -0.020306 0.0074934 0.0080397 -0.46852 -0.97871 0.055583 -0.0053572 -0.032966 0.26674 -0.3325 -0.25471 0.37763 -0.11724 0.39339 0.10372 -0.21554 -0.071368 -0.1536 -0.0015577 -0.030975 0.13114 -0.40516 -0.016378 -0.1423 -0.55628 -0.021972 0.018802 -0.066649 0 -0.09712 0.007733 0.0039412 -0.076605 0.030445 -0.00073521 -0.21546 0.15456 0 0.38266 0.002652 -0.42067 0 -0.14409 -0.040853 -0.01811 0.019702 0.077901 -0.4517 0.33707 0.38125 -0.027122 0.055919 0.12954 -0.019855 -0.024099 -0.37066 -0.33039 0.010201 0.11757 -0.14507 -0.14327 -0.20231 -0.53594 -0.75181 -0.16045 0.01354 -0.74015 -0.31857 Deletion Peak 15 - CN values 13q11 chr13:1-18870000(probes 195988:197901) chr13:18190001-18249999(probes 197867:197873) chr13:17420001-18389999(probes 197774:197892) 4.3658e-06 0.00010721 Actual Copy Change Given -0.13066 -0.18853 -0.56264 -0.25425 -0.60361 -0.76073 -0.1541 -0.62433 -0.27269 -0.21949 -0.59174 1.0353 0.12059 -0.2619 0.033566 -0.17384 0.35136 0.42262 -0.15454 -0.92252 -0.013438 -0.021811 -0.076836 -0.17031 0.4404 -0.052831 -0.072709 -0.025103 -0.29321 -0.55313 -0.029653 0.051029 -0.028689 -0.40964 -0.063027 -0.067172 0.0051219 -0.51507 -0.17798 -0.024965 -0.10681 -0.27364 -0.25656 0.01389 -0.15227 -0.088626 0.020708 -0.033702 -0.13769 -0.34393 0.20394 0.12047 -0.011544 -0.38718 -0.10852 -0.41504 -0.035858 0.98868 -0.30386 -0.015767 0.3907 -1.093 -0.24192 0.13017 -0.71482 0.038127 -0.33595 -0.08168 -0.032414 -0.51371 -0.025224 -0.012666 -0.42397 -0.10655 -0.35135 -0.1132 -0.5344 -0.56253 -0.80615 -0.16389 0.66573 -0.24562 -0.24136 -0.01851 0.17135 -0.11848 -0.014009 -0.46149 -0.20314 -0.46691 -0.10208 -0.65128 -0.15969 -0.32303 -0.14125 -0.61796 0.27192 -0.071756 0.39732 0.72944 -0.0072224 1.8964 -0.74789 0.051727 -0.20492 0.23273 -0.32897 -0.13283 Deletion Peak 16 - CN values 13q14.2 chr13:35450001-69709999(probes 199421:202587) chr13:48290002-48500000(probes 200719:200747) chr13:44780001-54470000(probes 200352:201221) 0.00029273 0.0019411 Actual Copy Change Given -0.037571 -0.18853 0.089448 -0.50765 -0.61508 -0.36104 -0.1541 -0.63872 -0.24175 -0.53073 -0.59062 -0.88515 -0.1288 -0.26411 0.033566 -0.17384 -0.47171 -0.19168 -0.15968 -0.40069 -0.013438 0 -0.076836 -0.17031 -0.35967 -0.052831 -0.072709 -0.025103 -0.27253 -0.55313 -0.029653 -0.40493 -0.028689 0.47715 -0.06001 -0.04546 -0.31896 0.0055401 -0.17798 -0.024965 -0.19309 -0.2717 -0.25656 0.13801 -0.15632 -0.52509 -0.083766 -0.91371 -0.40785 0.11649 0.025615 0.028594 -0.12061 -0.066929 -0.10852 -0.43307 -0.035858 -0.14395 -0.30386 -0.015767 -0.15381 -0.38863 -0.24192 -0.15553 0.024309 -0.28717 -0.33595 -0.08168 -0.3916 -1.2068 -0.69662 -0.35775 -0.40281 -0.10655 -0.40164 -0.24539 -0.52359 -0.14314 -0.44241 -0.32572 -0.37986 -0.24562 -0.24136 -0.01851 -0.71489 -0.11848 -0.014009 -0.44386 0.14491 -0.1095 -0.10208 -0.63218 -0.12102 0.058772 -0.13315 0.0057128 -0.29762 -0.09109 -0.36508 -0.14262 -0.43497 -0.37463 0.046138 -0.74808 -0.17235 -0.082576 0.1107 -0.13899 Deletion Peak 17 - CN values 14q11.2 chr14:1-20069999(probes 207214:209043) chr14:18210001-20050000(probes 209041:209042) chr14:17200001-20079999(probes 208939:209044) 3.2018e-07 3.2976e-07 Actual Copy Change Given -0.497 0.23613 0.098808 -0.2295 -0.60617 -0.39682 0.011852 0.02256 0.42714 0.26184 0.84329 1.5216 0.10314 -0.22903 -0.27593 -0.0624 0.096249 -0.10119 0.3036 -0.55443 -0.0072272 0.30956 -0.049758 -0.26823 0.024672 0.38134 0.051549 0.50092 -0.23108 0.022151 0.015089 0.28193 0.028993 -0.346 0.034987 -0.14662 -0.31202 0.20276 0.14566 0.085255 -0.099886 0.0051669 -0.10707 0.20355 0.1766 -0.15412 0.011375 0.0075694 0.095309 1.1745 -0.56717 0.17508 0.028977 0.11372 0.11733 -0.1803 -0.0034243 0.31936 -0.026211 -0.097172 -0.18623 0.0093947 0.18833 -0.1449 0.0088387 0.002515 -0.074127 -0.10556 -0.39632 0.047822 0.034302 -0.35103 0.41329 -0.069348 0.016363 -0.07935 0.39245 0.050156 -0.42705 -0.037785 -0.64757 -0.056288 -0.16841 -0.5386 0.10611 0.29331 -0.0087476 0.16054 -0.33471 -0.060697 0.084619 -0.14544 0.046957 0.022966 -0.022614 0.024211 0.39396 0.02376 0.03793 0.13085 0.65847 0.17243 1.1453 -0.41583 -0.16283 0.11032 -0.76657 0.011131 Deletion Peak 18 - CN values 17p11.1 chr17:21290002-27129999(probes 235889:236375) chr17:21400001-22740000(probes 235898:235899) chr17:120001-26739999(probes 234119:236329) 2.8668e-11 2.8824e-11 Actual Copy Change Given 0.34553 0.016065 0.29287 0.022188 -0.70369 0.34456 -0.063219 -0.67739 0.62558 -0.18087 -0.0072608 1.348 -0.0091395 -0.26033 -0.042335 -0.19764 -0.43788 -0.20158 0.24611 -0.10106 -0.010657 -0.62768 -0.045841 0.40286 0.5357 -0.056934 -0.059229 -0.0040312 -0.25764 -0.55419 -0.12414 1.3017 -0.13882 -0.36061 0.00062911 -0.074689 0.78259 -0.49124 -0.18136 0.05307 -0.081625 -0.24355 -0.24475 -1.1793 -1.2929 -0.47761 -0.064331 0.037316 -1.2601 -0.22134 -0.49726 0.7114 0.481 -0.073382 -0.36184 -0.4538 0.025942 0.05344 0.098725 0.078216 -0.07875 -0.45198 0.12388 -0.15406 0.72345 0.091865 0.1532 -0.22341 -0.0092029 -0.19489 -0.015606 0.3602 0.23022 -0.1224 -0.42184 -0.19705 -0.5312 0.16687 -0.53112 -0.0014673 -0.38238 -0.20053 -0.26653 0.079549 -0.67913 -0.10704 0.017326 0.17229 -0.27869 0.057644 -0.061761 -0.11488 -0.095749 0.23608 -0.13642 -0.36415 -0.9961 -0.084317 0.060573 -0.21397 0.42147 -0.050511 -0.57193 -0.52042 -0.18113 -0.024594 -1.0228 -0.80843 Deletion Peak 19 - CN values 18q22.1 chr18:40090002-80373285(probes 245455:249183) chr18:65520002-66120000(probes 248105:248106) chr18:52860001-80373285(probes 246792:249183) 0.0015562 0.0015921 Actual Copy Change Given 0.18838 0.14236 0.4913 0.029086 -0.06709 -0.37424 0.0026203 -0.091069 -0.11905 -0.16882 0.50292 -0.19835 -0.23795 0.0067685 -0.33981 0.025096 -0.0067544 -0.23604 0.12692 0.046206 -0.0010608 0.058693 -0.025156 -0.34033 0.61411 -0.033426 -0.069478 -0.017183 -0.28424 -0.55133 -0.019888 -0.22247 0.33749 0.084887 -0.12515 -0.085685 -0.33442 -0.41502 -0.0055415 -0.091125 0.0035934 -0.0037142 0.26151 -0.22447 0.54722 0.009409 0.0042983 -0.054162 0.15587 -0.69276 1.0355 -0.48679 -0.24868 -0.32287 -0.35095 -0.14413 -0.0090064 -0.011085 -0.28588 -0.035423 -0.15074 0.35516 0.0066525 0.11548 -0.72495 -0.011593 -0.33329 -0.034181 -0.40538 -0.59437 -0.70963 -0.019218 -0.66429 -0.14086 0.0020024 -0.046813 -0.38881 -0.16227 -0.44427 -0.14465 0.041554 0.090367 -0.25041 0.44918 0.047744 -0.042168 -0.0074047 -0.077139 0.1281 -0.24616 -0.14895 -0.65357 -0.12104 -0.26732 -0.025309 -0.36882 0.18242 -0.09649 0.063379 0.063835 0.0811 -0.1946 -0.54995 0.48263 0.016399 -0.072187 0.4711 -0.0018164 Deletion Peak 20 - CN values 19q11 chr19:1-58617616(probes 249184:254688) chr19:23860001-27759999(probes 251508:251509) chr19:23870001-27769999(probes 251509:251510) 0.22668 0.22903 Actual Copy Change Given 0.28704 0.13882 0.30603 -0.21566 -0.016902 0.0036397 0.0091995 0.017118 0.21044 0.31763 0.26388 -0.15566 0.28566 -0.012904 0.28949 -0.0079919 0.052879 1.6505 0.055867 -0.015955 0.01424 0.19034 0.014706 0.15202 -0.26651 0.52184 0.067843 -0.024619 0.039055 0.13243 0.012483 0.10699 -0.047581 -0.36903 0.15719 0.81854 0.38369 -0.044629 0.0049022 0 0.12118 0.026531 0.28538 0.069626 0.30528 -0.00092628 -0.00075303 -0.043585 -0.014581 0.0036393 0.47803 0.45627 0.25096 -0.011309 -0.12053 0.94765 0.0026701 0.028897 -0.033688 0.13387 0.031783 -0.065905 0.020972 -0.11665 -0.74144 0.33139 -0.013245 0.074843 0.098301 0.0070085 -0.69908 -0.025267 0.086889 0.085748 -0.012713 0.19159 -0.17694 1.3092 -0.051756 0.12539 0.18683 0.5309 0.14402 -0.023209 1.1434 0.06682 0.26906 0.58641 -0.038139 0.25135 -0.021303 0.63091 0.1372 0.52932 0.084768 -0.37715 0.25426 0.034328 -0.024969 0.22724 0.31549 1.0227 1.4288 0.01617 0.44909 -0.03863 3.1888 0.17789 Deletion Peak 21 - CN values 21p11.2 chr21:7820002-8439999(probes 261614:261704) chr21:8200002-8420000(probes 261675:261702) chr21:7960001-8720000(probes 261635:261752) 3.9897e-07 3.906e-07 Actual Copy Change Given -0.12973 0.13663 -0.53941 -0.15165 -0.58489 -0.3687 -0.14109 0.13645 0.28783 -0.086078 -0.33989 0.47545 0.21807 -0.20287 -0.14919 -0.13134 -0.051036 -0.30288 0.097793 -0.76342 -0.014814 -0.0016216 -0.057151 0.095194 -0.24367 -0.1051 -0.022316 0.51115 -0.39439 -0.44043 -0.10449 -0.053094 -0.13457 -0.38004 -0.11269 -0.14697 -0.41873 -0.41122 -0.0039975 -0.0096616 -0.073964 -0.12629 -0.21766 -0.0091974 -0.2398 -0.070225 0.042119 -0.079896 0.091991 -0.0043207 -0.53449 -0.47411 -0.15057 -0.25085 0 -0.19729 -0.013721 0.14539 -0.39922 -0.15359 -0.016731 0.16537 -0.15 -0.13948 -0.46795 -0.28644 -0.095376 -0.21917 -0.46175 0.34521 -0.55235 -0.1416 -0.19185 -0.066089 -0.17699 -0.26506 -0.18784 -0.074112 -0.63845 -0.14615 0.36082 0.10092 -0.024925 -0.049959 -0.42869 -0.081381 0.08327 0.32052 -0.050633 -0.36333 -0.13453 -0.7577 -0.37862 -0.072899 -0.11866 -0.29861 0.25928 -0.027086 -0.0034941 -0.048904 -0.35706 0.11338 -1.0988 0.16856 -0.40046 -0.22586 -0.066221 0.090823 Deletion Peak 22 - CN values 21q22.3 chr21:36040002-46709983(probes 264221:265195) chr21:44970001-45020000(probes 265102:265106) chr21:44990001-45010000(probes 265104:265105) 0.041296 0.041732 Actual Copy Change Given -0.49207 -0.20653 -0.32428 0.12813 -0.46399 -0.07305 -0.023455 0.00087866 -0.58584 -0.21805 -0.0079613 -0.012746 -0.13738 -0.022919 -0.18655 -0.0059212 -0.20673 -0.23843 0.11384 -0.012591 0.0058864 -0.28863 -0.031685 -0.34087 -0.14518 -0.067377 0.042595 -0.03953 -0.068457 -1.1653 -0.051105 -0.20698 -0.22946 0.036169 -0.15778 -0.073516 -0.30147 -0.40761 -0.02626 -0.095549 0.0013032 0.015132 -0.32327 -0.092587 -0.1381 -0.050041 -0.036241 -0.053109 0.039336 -0.35246 -0.0106 -0.18936 -0.11839 -0.080161 0.04214 -0.49273 0.0070738 -0.022067 -0.29157 -0.23696 -0.19409 -0.41463 -0.22777 -0.01945 -0.68581 -0.14982 -0.0066614 -0.16675 -0.026473 -0.12881 -0.10823 -0.35725 -0.21327 -0.14319 -0.031215 0.061437 -0.27341 -0.17603 -0.037643 -0.37723 -0.43916 -0.28053 -0.27308 0.0019533 -0.74695 -0.058626 -0.59884 -0.43392 -0.11319 -0.075343 -0.10746 -0.65482 -0.022835 -0.063599 -0.063758 -0.40446 -0.32178 -0.059084 0.73168 -0.15533 0.070981 -0.020276 -0.083706 -0.051651 -0.48615 -0.077406 -0.035621 -0.022211 Deletion Peak 23 - CN values 22p11.2 chr22:10960001-16940000(probes 266316:266861) chr22:11890001-11960000(probes 266455:266467) chr22:11730001-12170000(probes 266430:266502) 0.0017517 0.0016842 Actual Copy Change Given 0.061798 0.06701 -0.1382 0.1519 -0.19807 -0.24084 -0.12311 0.2244 -0.22451 -0.21746 -0.022027 0.039509 -0.051952 0.1614 -0.16248 -0.28862 -0.042009 -0.013385 0.070514 -0.81005 -0.019961 0.23246 -0.040893 0.33592 0.48712 -0.078161 0.028282 0.1463 -0.20767 -0.2438 -0.039361 -0.098814 -0.06244 0.14628 -0.31906 -0.14461 -0.30542 -0.28238 -0.039764 0.020783 -0.089896 -0.084469 0.02647 -0.021624 -0.12177 -0.14585 0.026336 -0.091821 -0.16466 0.14534 -0.0083324 0.0042515 -0.019979 0.60632 0.02209 0.25326 -0.006062 -0.076239 -0.11076 0.1513 -0.16726 -0.8468 0.13338 -0.18035 -0.16881 0.4934 -0.43646 -0.076154 -0.62813 0.32731 -0.54283 -0.016715 -0.10058 0.017117 -0.069885 -0.15734 -0.33184 -0.012914 -0.4396 -0.10272 0.32106 0.077153 0.082211 0.62283 -0.18853 -0.1169 0.10441 -0.15503 0.21223 -0.35231 -0.024794 -0.28485 -0.2512 0.020945 -0.097813 -0.35433 0.1278 -0.0098122 0.3889 -0.72029 0.11409 0.04178 0.11738 -0.10488 -0.50484 0.012915 -0.28112 0.063445 Deletion Peak 24 - CN values Xq21.1 chrX:1-156040895(probes 269641:282148) chrX:250001-155969999(probes 269674:282134) chrX:1-3269999(probes 269641:269677) 0.00029273 0.00030528 Actual Copy Change Given 0.33281 -0.18959 0.73441 -0.058034 0 0.00087732 -0.023847 -0.060577 -0.17026 1.0956 1.3341 1.0473 0.055803 -0.026637 0.10297 -0.0044218 0.049658 0.23106 0.098521 0.41183 0.00029051 0.25986 -0.0078113 -0.29536 -0.0091405 0.75942 0.040117 0.40866 0.012468 -0.57935 0.040912 0.14929 0.11724 0.39014 0.12593 0.19644 0.30064 -0.028813 -0.14379 0.061143 0.036167 -0.0050219 -0.27492 0.10188 0.14598 0.026436 -0.045952 -0.055758 -0.034629 -0.35338 0.47093 0.21872 0.36024 0.44708 0.089655 0.53057 0.025739 -0.17621 0.13236 0.13071 0.00054262 0.52134 0.2408 -0.12776 0.003241 0.49131 0.0076615 0.012372 -0.12658 0.17801 -0.0025845 -0.013078 -0.45066 -0.037342 -0.2829 -0.15541 -0.31447 0.37354 1.213 0.087047 0.21554 -0.092477 -0.25577 -0.016523 0.053334 0.031303 0.24756 0.27976 -0.34874 -0.011847 -0.021252 -0.01738 0.10453 0.03752 0.077864 -0.020747 0.035947 -0.0126 0.39313 0.58197 0.24603 0.33579 0.38485 -0.040172 -0.061582 0.0019076 0.26572 0.55702 Deletion Peak 25 - CN values Xq22.3 chrX:108140002-108790000(probes 278090:278161) chrX:108430001-108790000(probes 278132:278161) chrX:108540001-108559999(probes 278147:278148) 0.051228 0.10605 Actual Copy Change Given 0.4068 -0.5489 0.73441 -0.058034 0.028156 0.018056 -0.023847 -0.027857 -0.12687 3.6569 1.443 3.2034 0.095432 -0.026637 0.083001 -0.0044218 -0.98788 0.41459 -0.14748 1.3875 -0.0030933 0.30044 0.0099543 -0.28537 -0.65134 0.75942 0.043624 0.44992 0.012468 -1.0674 0.040912 0.14929 0.19811 0.39014 0.13939 0.21558 0.30064 -0.053446 -0.12006 -0.40143 0.03959 -0.0050219 3.6569 0.097703 0.14598 0.20196 -0.045952 -0.023944 0.0036881 0.39116 0.46307 0.21872 0.64146 0.46926 -0.32694 0.57945 0.029282 -0.16415 0.15304 0.20206 0.020026 0.57963 0.30813 -0.12369 0.003241 0.56496 0.0076615 0.012372 -0.13108 0.17801 0.0035674 -0.0040056 -0.41298 -0.037342 -0.26523 -0.16347 0.37603 0.37695 1.2226 0.087047 0.34278 -0.2417 -0.24593 -0.65371 0.084805 0.025551 0.27624 0.31639 0.15217 0.23099 -0.13227 0.013756 0.10772 -0.16238 0.077864 -0.0096699 0.16132 -0.0077251 0.4244 0.58197 0.36236 0.34311 0.57401 0.018243 -0.042528 0.0019076 0.3154 0.71118 Deletion Peak 26 - CN values Yq11.23 chrY:14050001-56959204(probes 283680:288079) chrY:24820001-24920000(probes 284849:284860) chrY:11750001-57227415(probes 283431:288107) 3.6755e-09 3.4739e-09 Actual Copy Change Given 0.30892 0.54555 0.54681 -0.25293 -1.2229 -0.10371 0.25818 -1.2929 -0.33235 0.26361 -0.90773 -1.2929 -0.34504 0.36526 -0.3847 -0.54588 -1.0439 -0.25592 -0.42025 -1.2929 -0.075782 0.40991 3.6569 -0.52263 0.39757 -0.66224 -0.013387 -0.10689 1.6583 -0.40409 -0.16519 -0.68123 -0.29155 -0.59781 -0.13813 -0.30897 -0.82461 -0.54973 0.1057 -0.50309 2.0196 -0.5682 -0.79215 -0.84355 -0.22647 -1.091 -0.18245 -1.1796 -1.0662 -0.85662 -0.32458 2.1536 -0.45544 -0.23968 -0.35255 0.085376 -0.43157 -0.58332 -0.83172 -0.67364 -0.49003 0.73082 -0.42674 -0.44374 -1.2929 -0.49875 -0.74611 -0.48526 -0.4748 -1.2929 -1.2929 0.3189 0.13319 -0.10142 -0.208 0.54373 -1.0919 -1.2929 -0.45857 0.27137 -1.2929 -0.097802 -0.29922 -1.1786 -0.90913 -0.42791 0.15137 -1.2856 -0.85344 -0.523 -0.47829 0.034455 -0.41348 0.063433 -0.22091 -0.71815 -1.2929 1.2495 0.40862 -0.98868 0.10576 0.25573 -1.2929 -0.83511 -0.77266 0.07208 -1.2929 -1.072