index chromosome region_start region_end peak_start peak_end enlarged_peak_start enlarged_peak_end n_genes_in_region genes_in_region n_genes_in_peak genes_in_peak n_genes_on_chip genes_on_chip top 3 1 1 150500000 152750001 150530001 150630000 119990001 154750001 281 ADAR,ARNT,BCL9,CHRNB2,CTSK,CTSS,DRD5P2,ECM1,ENSA,FCGR1A,FCGR1B,FLG,FMO5,GJA5,GJA8,IL6R,ILF2,IVL,KCNN3,LOR,MCL1,SMCP,NOTCH2,NPR1,PDZK1,PI4KB,PRKAB2,PSMB4,PSMD4,RAB13,RFX5,RNU1-4,RORC,RPS27,S100A1,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A8,S100A9,S100A10,S100A11,S100A12,S100A13,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2C,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,VPS72,TCHH,TPM3,TUFT1,HIST2H2AA3,HIST2H2AC,HIST2H2BE,HIST2H4A,PIP5K1A,ANXA9,ITGA10,PEX11B,SELENBP1,PRPF3,SEC22B,CHD1L,PDE4DIP,SETDB1,UBAP2L,SV2A,DENND4B,RBM8A,SF3B4,PIAS3,HAX1,SEMA6C,POLR3C,TXNIP,JTB,MTMR11,MLLT11,SLC27A3,TDRKH,CD160,CELF3,VPS45,POGZ,RPRD2,SNAPIN,CA14,NBPF14,C1orf43,CHTOP,LCE2B,RNVU1-7,RNU1-3,RNU1-2,RNU1-1,SLC39A1,RNF115,TMOD4,CERS2,CRNN,BOLA1,APH1A,PLEKHO1,ACP6,GPR89B,OAZ3,MRPS21,ADAMTSL4,CRCT1,C1orf56,GOLPH3L,UBE2Q1,FAM63A,CDC42SE1,OTUD7B,PGLYRP4,ATP8B2,LINC00869,S100A14,GATAD2B,CGN,ZNF687,PRUNE1,MRPL9,INTS3,SCNM1,TNFAIP8L2,C1orf54,TARS2,SNX27,ANP32E,HORMAD1,POLR3GL,LCE3D,AQP10,NUP210L,PGLYRP3,GNRHR2,THEM4,GABPB2,TCHHL1,RPTN,TDRD10,SHE,LIX1L,S100A16,CREB3L4,CIART,HFE2,ANKRD35,NBPF12,LELP1,BNIPL,SPRR4,NUDT4P2,PDIA3P1,LCE4A,NBPF11,NUDT17,CRTC2,LCE5A,RIIAD1,THEM5,NBPF15,ANKRD34A,HIST2H2AB,HIST2H3A,HIST2H2BC,HIST2H2BA,S100A7A,LINGO4,FLG-AS1,LOC343052,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3E,NOTCH2NL,LINC01138,LOC388692,LYSMD1,HRNR,FLG2,C1orf189,NBPF9,NUDT4P1,HIST2H2BF,NBPF18P,KPRP,LCE6A,FAM72C,ADAMTSL4-AS1,PRR9,PPIAL4G,FAM231D,NBPF13P,PPIAL4D,LOC645166,S100A7L2,EMBP1,SRGAP2B,SRGAP2C,PPIAL4A,GPR89A,PPIAL4C,HIST2H3D,FAM72B,MIR554,FAM72D,NBPF8,LINC00623,LOC728989,PPIAL4E,PFN1P2,PDZK1P1,MIR190B,C1orf68,LOC100131107,LOC100132057,LOC100132111,NBPF10,FCGR1CP,C2CD4D,NBPF20,HYDIN2,LINC00624,MIR4257,LOC100505824,LOC100507670,TNFAIP8L2-SCNM1,MIR5698,MIR5087,SRGAP2-AS1,FALEC,UBE2Q1-AS1,SRGAP2D,RNVU1-8,LOC101927429,LOC101927468,GBAT2,LOC101928009,LOC101928034,LOC101928979,NBPF25P,LOC101929798,RNVU1-4,RNVU1-14,RNVU1-15,RNVU1-20,RNVU1-17,RNVU1-3,RNVU1-1,RNVU1-6,RNVU1-19,MIR6737,MIR6878,MIR6736,MIR6077,MIR8083,CH17-408M7.1,LOC103091866,LOC105371433, 5 ENSA,MCL1,ADAMTSL4,ADAMTSL4-AS1,MIR4257, 2 3 93660001 198295559 181960001 181980000 181690000 182300001 3 SOX2,SOX2-OT,LINC01206, 1 LINC01206, 3 3 93660001 198295559 172370001 172660000 142000000 186650001 299 hsa-mir-720,AADAC,ACTL6A,AGTR1,AHSG,ATR,BCHE,AP2M1,CLCN2,CP,CPA3,CPB1,CRYGS,DGKG,DVL3,ECT2,EHHADH,EIF4G1,EPHB3,ETV5,MECOM,GHSR,GYG1,IL12A,KPNA4,TM4SF1,MBNL1,MLF1,MME,NDUFB5,CLDN11,P2RY1,PFN2,SERPINI1,SERPINI2,PIK3CA,PLD1,PLOD2,PLS1,PLSCR1,POLR2H,PRKCI,PSMD2,PTX3,RAP2B,RARRES1,TRA2B,SHOX2,SI,SIAH2,SKIL,SLC2A2,HLTF,SOX2,SSR3,TERC,TFDP2,THPO,SEC62,TM4SF4,TRPC1,CLRN1,ZIC1,KCNAB1,FXR1,CHRD,B3GALNT1,TNFSF10,GMPS,EIF2B5,USP13,MAP3K13,SLC33A1,CHST2,ECE2,TSC22D2,P2RY14,SMC4,ABCC5,ALG3,KCNMB2,IGF2BP2,PDCD10,RNF13,SLITRK3,NLGN1,PLCH1,TNIK,MCF2L2,ATP11B,U2SURP,VPS8,WWTR1,TIPARP,ARHGEF26,PCOLCE2,RNU6-1,GPR160,FETUB,LAMP3,KCNMB3,SERP1,GOLIM4,GPR171,SCHIP1,NMD3,COMMD2,ZNF639,RSRC1,PEX5L,SELT,DNAJB11,P2RY13,GPR87,DCUN1D1,XRN1,KLHL24,TBCCD1,ABCF3,PARL,MFN1,YEATS2,MYNN,EIF5A2,SUCNR1,MCCC1,LXN,CCNL1,PLSCR2,PLSCR4,MRPL47,NCEH1,IFT80,SLC7A14,SENP2,GNB4,MAGEF1,ZMAT3,MFSD1,FNDC3B,P2RY12,VEPH1,TBL1XR1,ZBBX,LRRC31,MAP6D1,PHC3,ARL14,SPATA16,EIF2A,B3GNT5,ZIC4,HPS3,ACTRT3,GFM1,KLHL6,VWA5B2,TMEM41A,EGFEM1P,CAMK2N2,TM4SF18,MED12L,CLRN1-AS1,DNAJC19,OTOL1,FAM131A,ERICH6,TTC14,PPM1L,WDR49,LRRC34,PQLC2L,C3orf79,SPTSSB,DHX36,HTR3C,LIPH,HTR3D,RPL22L1,AADACP1,C3orf58,LOC253573,NAALADL2,GK5,SLC9A9,HTR3E,IGSF10,C3orf33,C3orf70,TRIM59,CCDC39,LINC00880,EHHADH-AS1,LRRIQ4,SAMD7,AADACL2,GPR149,PAQR9,NMRAL1P1,SOX2-OT,PLSCR5,ANKUB1,LEKR1,TMEM212,MBNL1-AS1,C3orf80,FLJ46066,MIR15B,MIR16-2,LOC440982,TMEM14EP,LINC01330,IGF2BP2-AS1,LOC646903,PA2G4P4,LINC01192,TMEM183B,IQCJ,SCARNA7,SNORD66,MIR551B,MIR569,LINC00886,LINC01100,WWTR1-AS1,LOC100128164,MIR1224,TIPARP-AS1,LOC100289361,MIR1263,LINC00881,MIR3919,IQCJ-SCHIP1,LINC01208,LINC00578,LOC100505609,LINC00888,LOC100507389,LOC100507461,ARHGEF26-AS1,LOC100507537,LOC100507661,MIR4448,MIR4789,LINC00501,MIR5186,MIR5588,MIR548AQ,NAALADL2-AS3,HLTF-AS1,ABCC5-AS1,NLGN1-AS1,KLHL6-AS1,EIF2B5-AS1,KCNAB1-AS2,KCNAB1-AS1,TM4SF1-AS1,TMEM212-AS1,NAALADL2-AS2,NAALADL2-AS1,LINC01014,IQCJ-SCHIP1-AS1,SLC9A9-AS1,LOC100996447,LINC01206,LOC101243545,PAQR9-AS1,LOC101927866,LINC01213,LINC01214,ERICH6-AS1,LOC101928105,AADACL2-AS1,LOC101928166,LINC01487,IL12A-AS1,LOC101928583,LINC01209,LOC101928739,PEX5L-AS2,LOC101928882,LOC101928992,RNU6-7,MIR6828,MIR7977,KCCAT211,LOC102724604,RNU6-2,LINC01322,LINC01327,LINC01324,KCNMB2-AS1,LOC105374177,LOC105374194,LOC105374205,LOC105374244,LOC105374250,LOC105374313,HTR3E-AS1, 4 GHSR,TNFSF10,NCEH1,FNDC3B, 4 4 52770001 57170000 55470001 55520000 53500000 56710001 29 KDR,KIT,PDGFRA,PPAT,SRP72,CLOCK,CEP135,PAICS,NMU,CHIC2,EXOC1,TMEM165,KIAA1211,SRD5A3,HOPX,LNX1,ARL9,AASDH,PDCL2,GSX2,LOC339978,RPL21P44,LOC644145,LOC100506444,SRD5A3-AS1,THEGL,LNX1-AS1,LNX1-AS2,MIR7641-2, 1 CLOCK, 5 5 8530001 14680000 13680001 14540000 1 16050000 107 ADCY2,CTNND2,DAP,DNAH5,MTRR,NDUFS6,SDHA,SLC6A3,SLC9A3,SRD5A1,TERT,TRIO,SEMA5A,TRIP13,PDCD6,MARCH6,SLC12A7,PAPD7,TPPP,EXOC3,CCT5,FBXL7,ICE1,PP7080,IRX4,TAS2R1,FAM105A,NSUN2,CEP72,ANKH,AHRR,MRPL36,BRD9,FASTKD3,IRX1,ZDHHC11,LPCAT1,CLPTM1L,ROPN1L,MED10,NKD2,OTULIN,EXOC3-AS1,CCDC127,UBE2QL1,C5orf49,FAM173B,CMBL,PLEKHG4B,C5orf38,IRX2,ADAMTS16,LINC01018,LINC01019,LOC285692,SLC6A19,LINC01020,SLC6A18,LRRC14B,LOC389273,FLJ33360,LINC01194,LOC442132,ANKRD33B,SDHAP3,LOC728613,LOC729506,SNORD123,MIR887,LOC100130744,LOC100288152,MIR4277,MIR4278,LOC100505625,MIR4458HG,SNHG18,ROPN1L-AS1,LOC100506688,LINC01511,LOC100506858,MIR4458,MIR4454,MIR4457,MIR4637,MIR4636,MIR4456,MIR4635,LOC100996325,CTD-3080P12.3,LOC101929034,CTD-2194D22.4,LOC101929153,CTD-2297D10.2,LOC101929261,LOC101929284,CTD-2201E9.1,LOC101929412,LOC101929454,CTD-2350J17.1,MIR6131,MIR6075,HRAT5,LINC01377,LINC01017,LOC105374620,LOC105374631,SNORD141A, 2 DNAH5,TRIO, 6 6 52800001 52900000 52800001 52880000 52460000 53500001 19 GCLC,GSTA1,GSTA2,GSTA3,GSTA4,GCM1,TRAM2,ICK,FBXO9,TMEM14A,ELOVL5,EFHC1,RN7SK,GSTA5,TRAM2-AS1,RPS16P5,LOC730101,GSTA7P,MIR5685, 2 GSTA1,GSTA5, 7 7 54190001 55730000 55240001 55270000 54420000 55360001 8 EGFR,SEC61G,LANCL2,VSTM2A,VSTM2A-OT1,EGFR-AS1,LOC100996654,ELDR, 1 ELDR, 8 7 94720001 97050001 96470001 96520000 93410000 97290001 29 CALCR,COL1A2,DLX5,DLX6,DYNC1I1,GNG11,GNGT1,PDK4,PON1,PON2,PON3,SHFM1,TFPI2,SGCE,SLC25A13,BET1,PEG10,ASB4,PPP1R9A,SDHAF3,CASD1,DLX6-AS1,C7orf76,MIR489,MIR591,MIR653,LOC100506136,MIR4652,LOC105375401, 1 C7orf76, 9 8 35490001 46560001 38300001 38310000 38290000 38420001 3 FGFR1,WHSC1L1,LETM2, 1 WHSC1L1, 10 8 97040001 145138636 127350001 127400000 127300001 127480001 4 POU5F1B,CASC8,CCAT2,CASC21, 2 CASC8,CASC21, 11 9 35260001 37080001 36220001 36290000 33290000 37060001 92 ANXA2P2,NUDT2,AQP3,AQP7,CA9,CCIN,CD72,CLTA,CNTFR,FANCG,GALT,IL11RA,NFX1,NPR2,PAX5,PRSS3,RMRP,CCL19,CCL21,TESK1,TLN1,TPM2,VCP,RECK,RGP1,MELK,RUSC2,GNE,SIGMAR1,CREB3,UNC13B,CCL27,PTENP1,DCTN3,PHF24,DNAJB5,DCAF12,SPAG8,DNAI1,SIT1,STOML2,UBAP1,CHMP5,TMEM8B,UBE2R2,UBAP2,OR2S2,KIAA1161,GBA2,NOL6,FAM214B,HINT2,C9orf24,PIGO,ARHGEF39,LINC00950,ARID3C,RPP25L,C9orf131,RNF38,GLIPR2,LINC00961,ATP8B5P,FAM219A,CCDC107,FAM205A,KIF24,ENHO,FAM205BP,FAM221B,OR13J1,CNTFR-AS1,SUGT1P1,ANKRD18B,HRCT1,MSMP,LOC730098,FAM166B,SNORD121A,FAM205C,MIR4667,MIR4540,MIR4475,MIR4476,PTENP1-AS,SNORD121B,DNAJB5-AS1,LOC101926948,LINC01251,MIR6851,MIR6852,MIR6853, 1 GNE, 12 9 138260001 138394717 138260001 138290000 138260000 138394717 0 [FAM157B] 0 [FAM157B] 13 9 1 800000 1 40000 1 40001 14 FOXD4,KANK1,CBWD1,DOCK8,C9orf66,FAM138A,FAM138C,WASH1,DDX11L5,MIR1302-2,MIR1302-9,MIR1302-10,MIR1302-11,PGM5P3-AS1, 8 FAM138A,FAM138C,WASH1,DDX11L5,MIR1302-2,MIR1302-9,MIR1302-10,MIR1302-11, 14 11 68680001 74370001 69750001 69760000 69710000 69810001 3 FGF3,FGF4,FGF19, 0 [FGF4] 15 12 25050001 25370001 25320001 25340000 24730001 25340001 7 BCAT1,KRAS,LRMP,CASC1,ETFRF1,C12orf77,LOC645177, 0 [KRAS] 16 13 112580001 114090000 113220001 113370000 112580000 114080000 32 ATP4B,F7,F10,GAS6,LAMP1,GRK1,TFDP1,CUL4A,PROZ,TUBGCP3,RASA3,ATP11A,MCF2L,TMCO3,DCUN1D2,PCID2,GRTP1,ADPRHL1,TMEM255B,ATP11AUN,LINC00452,GAS6-AS1,LINC00552,MCF2L-AS1,GAS6-AS2,LINC00565,GRTP1-AS1,LINC00454,ATP11A-AS1,LOC101928841,MIR8075,F10-AS1, 5 LAMP1,CUL4A,GRTP1,GRTP1-AS1,MIR8075, 17 14 37280001 37510001 37300001 37320000 36430000 38060001 12 FOXA1,PAX9,NKX2-1,NKX2-8,SLC25A21,MIPOL1,SFTA3,TTC6,LINC00517,SLC25A21-AS1,NKX2-1-AS1,MIR4503, 1 MIPOL1, 18 15 101940001 101991189 101950001 101960000 101950000 101991189 10 WASH3P,FAM138E,DDX11L9,MIR1302-2,MIR1302-9,MIR1302-10,MIR1302-11,MIR6859-2,MIR6859-3,MIR6859-1, 1 FAM138E, 19 17 81890001 82110001 81980001 82050000 81890000 82090001 20 FASN,GPS1,MAFG,PYCR1,PCYT2,RAC3,RFNG,ALYREF,DCXR,ANAPC11,SIRT7,DUS1L,ASPSCR1,MAFG-AS1,NOTUM,CENPX,LRRC45,MYADML2,NPB,SNORD134, 6 RAC3,RFNG,DCXR,ASPSCR1,CENPX,LRRC45, 20 19 28180001 40450000 33240001 33280000 33200000 33380001 6 CEBPA,CEBPG,LRP3,PEPD,SLC7A10,CEBPA-AS1, 0 [SLC7A10] 21 19 1 290001 90001 90001 1 280000 9 OR4F17,WASH5P,LINC01002,FAM138A,FAM138C,MIR1302-2,MIR1302-9,MIR1302-10,MIR1302-11, 2 OR4F17,LINC01002, 22 19 58590000 58617616 58590000 58617616 58370001 58617616 20 RPS5,MZF1,ZNF132,UBE2M,TRIM28,SLC27A5,ZNF324,CHMP2A,ZNF446,CENPBD1P1,ZBTB45,ZNF837,ZNF497,ZNF584,ZNF324B,RNF225,MZF1-AS1,MIR4754,MIR6807,LOC105372483, 18 RPS5,MZF1,ZNF132,UBE2M,TRIM28,SLC27A5,ZNF324,CHMP2A,ZNF446,CENPBD1P1,ZBTB45,ZNF837,ZNF584,ZNF324B,RNF225,MZF1-AS1,MIR4754,MIR6807, 23 20 31250001 34820001 31890001 31980000 31310000 32350001 33 BCL2L1,FOXS1,HCK,ID1,PLAGL2,KIF3B,TM9SF4,TPX2,POFUT1,REM1,HM13,PDRG1,COX4I2,MYLK2,DEFB118,DUSP15,TSPY26P,CCM2L,LINC00028,TTLL9,ASXL1,DEFB116,DEFB119,DEFB121,DEFB122,DEFB123,DEFB124,XKR7,MIR1825,MIR3193,HM13-AS1,MIR7641-2,ABALON, 3 PDRG1,TTLL9,XKR7, 24 21 16050001 17690001 16130001 16180000 14580000 18970001 19 CXADR,TMPRSS15,NRIP1,BTG3,USP25,CHODL-AS1,C21orf91,SAMSN1,CHODL,C21orf91-OT1,LOC388813,MIR99AHG,MIRLET7C,MIR125B2,MIR99A,MIR548X,LINC01549,SAMSN1-AS1,MIR548XHG, 1 MIR99AHG, 25 22 21730001 23500001 21730001 21950001 18130000 24490001 151 ADORA2A,ARVCF,BCR,COMT,CRKL,DDT,GGT3P,GGT5,GNAZ,GP1BB,GSC2,GSTT2,SERPIND1,IGLL1,MIF,MMP11,PI4KA,SEPT5,MAPK1,PRODH,RANBP1,SLC7A4,SLC25A1,SMARCB1,TBX1,CLDN5,HIRA,UBE2L3,UFD1L,VPREB1,ZNF70,ZNF74,DGCR6,LZTR1,CLTCL1,DGCR14,CDC45,TOP3B,P2RX6,SNAP29,RAB36,PPM1F,DGCR2,TXNRD2,USP18,HIC2,SPECC1L,CABIN1,PRAME,TSSK2,SDF2L1,PPIL2,GSTTP1,DGCR11,DGCR9,POM121L1P,DGCR5,DGCR10,FBXW4P1,TRMT2A,RSPH14,POM121L9P,POM121L8P,YPEL1,ZDHHC8,VPREB3,DRICH1,MED15,UPB1,TUBA8,DGCR8,GNB1L,SUSD2,MRPL40,RTN4R,SLC2A11,C22orf29,THAP7,TMEM191A,KLHL22,DGCR6L,RIMBP3,SCARF2,GGTLC2,GUSBP11,DERL3,BMS1P20,TUBA3FP,C22orf39,TANGO2,ZNF280A,ZNF280B,LINC00895,LINC00896,AIFM3,RIMBP3C,YDJC,ZDHHC8P1,C22orf15,CCDC116,POM121L4P,RGL4,LOC284865,MIF-AS1,PI4KAP2,CCDC188,LOC388882,LOC391322,LRRC74B,BCRP2,CHCHD10,MIR130B,MIR185,THAP7-AS1,P2RX6P,RIMBP3B,FAM230B,LOC642643,TMEM191C,ADORA2A-AS1,LL22NC03-63E9.3,PRAMENP,CES5AP1,FAM230A,GSTTP2,GSTT2B,MIR649,MIR650,TMEM191B,PI4KAP1,LOC729461,DDTL,MIR301B,MIR1286,MIR1306,IGLL5,MIR3618,SEPT5-GP1BB,MIR4761,LINC01311,MIR5571,LOC100996335,LOC100996415,LOC100996432,SPECC1L-ADORA2A,LOC101927859,LOC101928891,LOC101929374,PCAT14,MIR6816,LOC102725072, 120 ARVCF,BCR,COMT,CRKL,GGT3P,GNAZ,GP1BB,GSC2,SERPIND1,PI4KA,SEPT5,MAPK1,PRODH,RANBP1,SLC7A4,SLC25A1,TBX1,CLDN5,HIRA,UBE2L3,UFD1L,VPREB1,ZNF74,DGCR6,LZTR1,CLTCL1,DGCR14,CDC45,TOP3B,P2RX6,SNAP29,RAB36,PPM1F,DGCR2,TXNRD2,USP18,HIC2,PRAME,TSSK2,SDF2L1,PPIL2,DGCR11,DGCR9,POM121L1P,DGCR5,DGCR10,FBXW4P1,TRMT2A,RSPH14,POM121L8P,YPEL1,ZDHHC8,MED15,TUBA8,DGCR8,GNB1L,MRPL40,RTN4R,C22orf29,THAP7,TMEM191A,KLHL22,DGCR6L,RIMBP3,SCARF2,GGTLC2,BMS1P20,TUBA3FP,C22orf39,TANGO2,ZNF280A,ZNF280B,LINC00895,LINC00896,AIFM3,RIMBP3C,YDJC,ZDHHC8P1,CCDC116,POM121L4P,LOC284865,PI4KAP2,CCDC188,LOC388882,LRRC74B,BCRP2,MIR130B,MIR185,THAP7-AS1,P2RX6P,RIMBP3B,FAM230B,LOC642643,TMEM191C,LL22NC03-63E9.3,PRAMENP,CES5AP1,FAM230A,MIR649,MIR650,TMEM191B,PI4KAP1,LOC729461,MIR301B,MIR1286,MIR1306,IGLL5,MIR3618,SEPT5-GP1BB,MIR4761,LINC01311,MIR5571,LOC100996335,LOC100996415,LOC100996432,LOC101927859,LOC101928891,LOC101929374,MIR6816,LOC102725072, 26 X 107910001 108910000 108230001 108270000 108120000 108330001 2 COL4A6,ATG4A, 1 COL4A6, 27 X 1 130000 1 40000 1 130001 0 [PLCXD1] 0 [PLCXD1] 28 Y 20150001 20290001 20170001 20180000 20170000 20180001 0 [TTTY10] 0 [TTTY10]