Index of /runs/CPTAC3_LSCC_DWG/CPTAC3-LSCC-v3beta/MUTSIG_2CV__UMich
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CPTAC3-LSCC-v3beta.final_analysis_set.maf
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_legos.ps
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results.mat
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_97-108.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_49-60.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_25-36.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_85-96.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_73-84.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_13-24.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_1-12.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_37-48.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_61-72.ai
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sig_genes_orig.txt
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_AF.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_normalized.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_counts.ai
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_CCG_histogram.ai
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nozzle.html
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TP53.stick_fig.jpg
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_spectrum.txt
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_61-72.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_1-12.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_37-48.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_73-84.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_25-36.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_85-96.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_13-24.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_49-60.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_97-108.fig
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CPTAC3-LSCC-v3beta_coMut.png
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KMT2D.stick_fig.jpg
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_25-36.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_85-96.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_13-24.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_73-84.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_61-72.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_1-12.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_49-60.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_97-108.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_samples_37-48.png
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BRCA2.stick_fig.jpg
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ARID1A.stick_fig.jpg
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NFE2L2.stick_fig.jpg
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_AF.png
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PTEN.stick_fig.jpg
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_CCG_histogram.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile.png
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sig_genes.txt
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_normalized.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_counts.png
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CDKN2A.stick_fig.jpg
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KEAP1.stick_fig.jpg
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_histogram.ai
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CPTAC3-LSCC-v3beta_coMut.pdf
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CUL3.stick_fig.jpg
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_AF.fig
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SUZ12.stick_fig.jpg
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_normalized.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_profile_counts.fig
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patient_counts_and_rates.txt
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stdout
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_histogram.fig
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_CCG_histogram.png
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_histogram.png
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gcs_transfer.sh
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_coverage.png
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nozzle.RData
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TP53.stick_fig.pdf
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_coverage.fig
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TP53.stick_fig.txt
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CPTAC3-LSCC-v3beta.final_analysis_set.maf.mutation_legos.html
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script
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KMT2D.stick_fig.pdf
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sample_sig_gene_table_orig.txt
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ARID1A.stick_fig.pdf
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sample_sig_gene_table.txt
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KEAP1.stick_fig.pdf
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NFE2L2.stick_fig.pdf
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PTEN.stick_fig.pdf
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CDKN2A.stick_fig.pdf
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CUL3.stick_fig.pdf
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BRCA2.stick_fig.pdf
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gcs_delocalization.sh
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SUZ12.stick_fig.pdf
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gcs_localization.sh
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KMT2D.stick_fig.txt
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dcc_archive_manifest.tsv
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ARID1A.stick_fig.txt
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NFE2L2.stick_fig.txt
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BRCA2.stick_fig.txt
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mutcateg_discovery.txt
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PTEN.stick_fig.txt
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KEAP1.stick_fig.txt
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CDKN2A.stick_fig.txt
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params.txt
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generatedStickFigurePaths.txt
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CUL3.stick_fig.txt
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mutcategs.txt
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SUZ12.stick_fig.txt
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discrepant_coding_effect_genes.txt
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MutSig_version.txt
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dcc_archive.properties
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stderr
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