Archive:  /cromwell_root/fc-fa05c490-b7c1-4ddd-ba57-cfae0646dc55/dcb65fef-9573-438f-9615-a472b2eeaa26/copy_number_gistic2/c7f43835-3841-419e-87a6-135081be7bd1/call-tool_gistic2/report_only_files.zip
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main
  adding: all_data_by_genes.txt (deflated 98%)
  adding: all_lesions.txt (deflated 78%)
  adding: all_thresholded.by_genes.txt (deflated 95%)
  adding: amp_genes.txt (deflated 69%)
  adding: amp_qplot.fig (deflated 80%)
  adding: amp_qplot.pdf (deflated 10%)
  adding: amp_qplot.png (deflated 6%)
  adding: arraylistfile.txt (deflated 76%)
  adding: broad_data_by_genes.txt (deflated 98%)
  adding: broad_significance_results.txt (deflated 57%)
  adding: broad_values_by_arm.txt (deflated 88%)
  adding: D.cap1.5.mat (deflated 6%)
  adding: dcc_archive_manifest.tsv (deflated 62%)
  adding: dcc_archive.properties (stored 0%)
  adding: del_genes.txt (deflated 62%)
  adding: del_qplot.fig (deflated 78%)
  adding: del_qplot.pdf (deflated 8%)
  adding: del_qplot.png (deflated 6%)
  adding: focal_data_by_genes.txt (deflated 98%)
  adding: focal_input.seg.txt (deflated 78%)
  adding: freqarms_vs_ngenes.pdf (deflated 32%)
  adding: gcs_delocalization.sh (deflated 76%)
  adding: gcs_localization.sh (deflated 84%)
  adding: gcs_transfer.sh (deflated 74%)
  adding: gene_stats.mat (deflated 5%)
  adding: gistic2.refgene.hg38.UCSC.add_miR.160920.mat (deflated 2%)
  adding: hg38_GDC_SNP6_CNV_list.161107.txt (deflated 71%)
  adding: nozzle.html (deflated 79%)
  adding: nozzle.RData (deflated 8%)
  adding: orig_stats.mat (deflated 15%)
  adding: params.mat (deflated 1%)
  adding: raw_copy_number.png (deflated 3%)
  adding: regions_track.bed (deflated 64%)
  adding: sample_cutoffs.txt (deflated 80%)
  adding: scores.gistic (deflated 79%)
  adding: script (deflated 77%)
  adding: segmented_data.mat (deflated 8%)
  adding: stderr (stored 0%)
  adding: stdout (deflated 86%)
  adding: table_amp.txt (deflated 55%)
  adding: table_del.txt (deflated 54%)
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.57ca6536/out.6
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.57ca6536/err.6
updating: stdout