Analysis Overview for 24 January 2012
Maintained by TCGA GDAC Team (Broad Institute/Dana-Farber Cancer Institute/Harvard Medical School)

This is the analysis overview for Firehose run "24 January 2012".


Note: These results are offered to the community as an additional reference point, enabling a wide range of cancer biologists, clinical investigators, and genome and computational scientists to easily incorporate TCGA into the backdrop of ongoing research. While every effort is made to ensure that Firehose input data and algorithms are of the highest possible quality, these analyses have not been reviewed by domain experts.

A total of 138 reports are available for analysis run "24 January 2012".

Cancer Types

Table 1.  Click "Browse" to view reports for a cancer type of interest. If you prefer to view reports on your own computer you may download a ZIP archive containing all reports for a cancer type by clicking "Download".

Cancer Type Abbreviation Reports HTML ZIP
Bladder Urothelial Carinoma BLCA 3 Browse Download
Breast Invasive Carcinoma BRCA 12 Browse Download
Cervical Squamous Cell Carcinoma CESC 1 Browse Download
Colon/Rectal Adenocarcinoma COADREAD 12 Browse Download
Glioblastoma Multiforme GBM 14 Browse Download
Head and Neck Squamous Cell Carcinoma HNSC 4 Browse Download
Kidney Renal Clear Cell Carcinoma KIRC 9 Browse Download
Kidney Renal Papillary Cell Carcinoma KIRP 9 Browse Download
Acute Myeloid Leukemia LAML 3 Browse Download
Brain Lower Grade Glioma LGG 8 Browse Download
Liver Hepatocellular Carcinoma LIHC 3 Browse Download
Lung Adenocarcinoma LUAD 11 Browse Download
Lung Squamous Cell Carcinoma LUSC 10 Browse Download
Ovarian Serous Cystadenocarcinoma OV 16 Browse Download
Pancreatic Adenocarcinoma PAAD 1 Browse Download
Prostate Adenocarcinoma PRAD 3 Browse Download
Stomach Adenocarcinoma STAD 5 Browse Download
Thyroid Adenocarcinoma THCA 3 Browse Download
Uterine Corpus Endometrioid Carcinoma UCEC 11 Browse Download

An archive containing all reports for the 24 January 2012 run is available for download. Links to archives with reports for individual cancer types are included in Table 1.

Methods & Data
  • Firehose Directory = /xchip/cga1/tcga_gdac_firehose_output

  • Run Prefix = prod__2012_01_24

  • Summary Report Date = Fri Feb 24 13:23:16 2012

  • Protection = FALSE