##Input batch prefix: LUSC
##Unpacking Inputs
Archive:  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/56205/Evidence_LUSC.zip
  inflating: Evidence_2922/LUSC_CNV.tab  
  inflating: Evidence_2922/LUSC_Expression.tab  
##Running Pathlette Model
Added cutoff 0.025
Added cutoff 0.975
Parsing evidence file: Evidence_2922_processed/LUSC_CNV.tab
Added cutoff 0.025
Added cutoff 0.975
Parsing evidence file: Evidence_2922_processed/LUSC_Expression.tab
lsf stdout
Sender: LSF System <lsf@node1543>
Subject: Job 1997400: </usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/wrapPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/ -i /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/56205/Evidence_LUSC.zip -c /xchip/cga/reference/PARADIGM/config.txt -o 1 >> cmd.out> Done

Job </usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/wrapPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/ -i /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/56205/Evidence_LUSC.zip -c /xchip/cga/reference/PARADIGM/config.txt -o 1 >> cmd.out> was submitted from host <tcga-gdac-genepattern> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/56206> was used as the working directory.
Started at Sat Feb 25 11:35:10 2012
Results reported at Sat Feb 25 11:40:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/wrapPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/ -i /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/56205/Evidence_LUSC.zip -c /xchip/cga/reference/PARADIGM/config.txt -o 1 >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    310.45 sec.
    Max Memory :       332 MB
    Max Swap   :       413 MB

    Max Processes  :         5
    Max Threads    :         6

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
WARNING: config batch id (broadOV) did not match evidence batch id (LUSC).
	Using a config file without the correct EM parameters will result in inaccurate output.
