Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.cophenetic.coefficient.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k5.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k3.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k8.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k6.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k4.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k2.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k7.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.all.k.plot.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_TopgenesforCluster1.expfile	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.cophenetic.coefficient.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k5.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k3.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k8.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k6.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k4.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k2.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.plot.k7.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	cnmf.consensus.all.k.plot.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	LUSC.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
GDAC_CNMFselectcluster3.inputallexp	LUSC.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00415:30	mRNAseq_Clustering_CNMF_2012021700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LUSC.mRNAseq_Clustering_CNMF.Level_4.2012021700.0.0
