Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	BLCA.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub43.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BLCA.miRseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:13	miRseq_Clustering_Consensus_2012032100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_BLCA.miRseq_Clustering_Consensus.Level_4.2012032100.0.0
