| preprocessPARADIGM1 evidence prefix | BRCA |
| preprocessPARADIGM1 expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/BRCA/784648/0.GDAC_mRNA_Preprocess_Median.Finished/BRCA.medianexp.txt |
| preprocessPARADIGM1 copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/BRCA/784660/1.GetReducedSegments.Finished/BRCA.RS.tsv |
| PARADIGMLite2 config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| PARADIGMLite2 run id | 1 |
| Execution Times: | |
| Submitted: | 08:31:17 02-02-12 |
| Completed: | |
| Elapsed: | 00 hrs 25 mins 11 secs |
step 1. preprocessPARADIGM [id: 54602] Preprocessing module for broad data input to PARADIGM
urn:lsid:broadinstitute.org:cancer.genome.analysis:00238:25
| evidence prefix | BRCA |
| expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/BRCA/784648/0.GDAC_mRNA_Preprocess_Median.Finished/BRCA.medianexp.txt |
| copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/BRCA/784660/1.GetReducedSegments.Finished/BRCA.RS.tsv |
| Output Files: | |
| Evidence_BRCA.zip | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 08:31:18 02-02-12 |
| Completed: | 08:36:27 02-02-12 |
| Elapsed: | 00 hrs 05 mins 09 secs |
step 2. PARADIGMLite [id: 54603] PARADIGM allows for pathway level inference using libdai (Written by: Steve Benz and Charles Vaske)
urn:lsid:broadinstitute.org:cancer.genome.analysis:00237:26
| evidence zip | Evidence_BRCA.zip |
| pathway zip | |
| config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| run id | 1 |
| Output Files: | |
| 1-BRCA_pathlette_IPA-paradigmlite-dev.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 08:31:18 02-02-12 |
| Completed: | 08:56:28 02-02-12 |
| Elapsed: | 00 hrs 25 mins 10 secs |