##Input batch prefix: BRCA
##Unpacking Inputs
Archive:  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/54602/Evidence_BRCA.zip
  inflating: Evidence_23361/BRCA_CNV.tab  
  inflating: Evidence_23361/BRCA_Expression.tab  
##Running Pathlette Model
Added cutoff 0.025
Added cutoff 0.975
Parsing evidence file: Evidence_23361_processed/BRCA_CNV.tab
Added cutoff 0.025
Added cutoff 0.975
Parsing evidence file: Evidence_23361_processed/BRCA_Expression.tab
lsf stdout
Sender: LSF System <lsf@node1539>
Subject: Job 8801991: </usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/wrapPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/ -i /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/54602/Evidence_BRCA.zip -c /xchip/cga/reference/PARADIGM/config.txt -o 1 >> cmd.out> Done

Job </usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/wrapPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/ -i /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/54602/Evidence_BRCA.zip -c /xchip/cga/reference/PARADIGM/config.txt -o 1 >> cmd.out> was submitted from host <tcga-gdac-genepattern> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1539>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/54603> was used as the working directory.
Started at Thu Feb  2 08:36:32 2012
Results reported at Thu Feb  2 08:56:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/wrapPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/PARADIGMLite.26.1394/ -i /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/54602/Evidence_BRCA.zip -c /xchip/cga/reference/PARADIGM/config.txt -o 1 >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1198.85 sec.
    Max Memory :      1228 MB
    Max Swap   :      1309 MB

    Max Processes  :         5
    Max Threads    :         6

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
WARNING: config batch id (broadOV) did not match evidence batch id (BRCA).
	Using a config file without the correct EM parameters will result in inaccurate output.
