Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_TopgenesforCluster1.expfile	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	BRCA.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	outputprefix.expclu.sub600.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
GDAC_selectBestcluster3.inputallexp	BRCA.mRNAseq_RPKM_tmm_log2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012032100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_BRCA.mRNAseq_Clustering_Consensus.Level_4.2012032100.0.0
