makeCNUseMe Execution Log 4:25 AM Thu Mar 29, '12

Running as user: cgaadm_deadline

getCNUseMe1 broadsnp file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/COADREAD/1035459/1.GDAC_MergeDataFiles.Finished/COADREAD.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt
getCNUseMe1 outfile COADREAD
Execution Times:
Submitted: 04:25:32 29-03-12
Completed:
Elapsed: 00 hrs 00 mins 25 secs

step 1. getCNUseMe [id: 68370] Generates a use me level III annotation file for copy number data

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00273:19
hms244
hms415
broadsnp file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/COADREAD/1035459/1.GDAC_MergeDataFiles.Finished/COADREAD.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt
ngs
outfile COADREAD
Output Files:
 COADREAD.Use_Me_Level_3__segmented_cna__seg.tsv
 stdout.txt
Execution Times:
Submitted: 04:25:32 29-03-12
Completed: 04:25:57 29-03-12
Elapsed: 00 hrs 00 mins 24 secs