# Created: Sat Dec 10 20:41:59 EST 2011 by cgaadm_deadline
# Job: 49181    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: MutSigPreprocess urn:lsid:broadinstitute.org:cancer.genome.analysis:00272:63
# Parameters: 
#    individual_set_id = COADREAD
#    maf1 = dependentsValues6174064016183235823.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis2306853311818691202.att_dependentsValues6174064016183235823.tsv
#    maf2 = 
#    maf3 = dependentsValues7788122102837877237.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis4865312218403207580.att_dependentsValues7788122102837877237.tsv
#    maf4 = 
#    maflabel1 = Broad
#    maflabel2 = WashU
#    maflabel3 = Baylor
#    maflabel4 = 
#    wig1 = dependentsValues5544920426397640569.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis2281225742591874240.att_dependentsValues5544920426397640569.tsv
#    wig2 = 
#    wig3 = dependentsValues4346947922896084831.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis7006972246805677094.att_dependentsValues4346947922896084831.tsv
#    wig4 = 
#    build = hg18
#    context65_dir = /xchip/cga1/lawrence/db/context65
#    context65_wig = /xchip/cga1/lawrence/db/context65/RefSeq_exons_hg18_june2010_terr_only.wig
#    num_categories = 4
#    target_list = /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010_fix1.txt
#    paramfile = /xchip/cga1/reference/mutsig_params/MutSig1.5.params.txt
