Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]
broadFile	LUSC.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_LUSC.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012021700.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00374:20	mRNA_Preprocess_Median_2012032100	LUSC.medianexp.txt	Median-Expression_Gene	Level_4	text	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012032100.0.0
exonFile	LUSC.exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.data.txt	gdac.broadinstitute.org_LUSC.Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.Level_3.2012021700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00374:20	mRNA_Preprocess_Median_2012032100	LUSC.medianexp.txt	Median-Expression_Gene	Level_4	text	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012032100.0.0
uncFile	LUSC.transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.data.txt	gdac.broadinstitute.org_LUSC.Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.Level_3.2012021700.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00374:20	mRNA_Preprocess_Median_2012032100	LUSC.medianexp.txt	Median-Expression_Gene	Level_4	text	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012032100.0.0
