| preprocessPARADIGM1 evidence prefix | PANCANCER |
| preprocessPARADIGM1 expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/PANCANCER/1065682/0.GDAC_mRNA_Preprocess_Median.Finished/PANCANCER.medianexp.txt |
| preprocessPARADIGM1 copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/PANCANCER/1065709/1.GetReducedSegments.Finished/PANCANCER.RS.tsv |
| PARADIGMLite2 config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| PARADIGMLite2 run id | 1 |
| Execution Times: | |
| Submitted: | 07:16:36 29-03-12 |
| Completed: | |
| Elapsed: | 01 hrs 06 mins 49 secs |
step 1. preprocessPARADIGM [id: 68873] Preprocessing module for broad data input to PARADIGM
urn:lsid:broadinstitute.org:cancer.genome.analysis:00238:25
| evidence prefix | PANCANCER |
| expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/PANCANCER/1065682/0.GDAC_mRNA_Preprocess_Median.Finished/PANCANCER.medianexp.txt |
| copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/PANCANCER/1065709/1.GetReducedSegments.Finished/PANCANCER.RS.tsv |
| Output Files: | |
| Evidence_PANCANCER.zip | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:16:36 29-03-12 |
| Completed: | 07:37:25 29-03-12 |
| Elapsed: | 00 hrs 20 mins 48 secs |
step 2. PARADIGMLite [id: 68874] PARADIGM allows for pathway level inference using libdai (Written by: Steve Benz and Charles Vaske)
urn:lsid:broadinstitute.org:cancer.genome.analysis:00237:26
| evidence zip | Evidence_PANCANCER.zip |
| pathway zip | |
| config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| run id | 1 |
| Output Files: | |
| 1-PANCANCER_pathlette_IPA-paradigmlite-dev.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:16:36 29-03-12 |
| Completed: | 08:23:24 29-03-12 |
| Elapsed: | 01 hrs 06 mins 47 secs |