  adding: PANCANCER_CNV.tab (deflated 99%)
  adding: PANCANCER_Expression.tab (deflated 56%)
lsf stdout
Sender: LSF System <lsf@node1644>
Subject: Job 9624437: </usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/preprocessPARADIGM.25.1393/preprocessPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/preprocessPARADIGM.25.1393/ -b PANCANCER -e /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/PANCANCER/1065682/0.GDAC_mRNA_Preprocess_Median.Finished/PANCANCER.medianexp.txt -c /xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/PANCANCER/1065709/1.GetReducedSegments.Finished/PANCANCER.RS.tsv >> cmd.out> Done

Job </usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/preprocessPARADIGM.25.1393/preprocessPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/preprocessPARADIGM.25.1393/ -b PANCANCER -e /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/PANCANCER/1065682/0.GDAC_mRNA_Preprocess_Median.Finished/PANCANCER.medianexp.txt -c /xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/PANCANCER/1065709/1.GetReducedSegments.Finished/PANCANCER.RS.tsv >> cmd.out> was submitted from host <tcga-gdac-genepattern> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/68873> was used as the working directory.
Started at Thu Mar 29 07:16:38 2012
Results reported at Thu Mar 29 07:37:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/usr/bin/perl /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/preprocessPARADIGM.25.1393/preprocessPARADIGM.pl -d /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/preprocessPARADIGM.25.1393/ -b PANCANCER -e /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/PANCANCER/1065682/0.GDAC_mRNA_Preprocess_Median.Finished/PANCANCER.medianexp.txt -c /xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/PANCANCER/1065709/1.GetReducedSegments.Finished/PANCANCER.RS.tsv >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1218.21 sec.
    Max Memory :     15737 MB
    Max Swap   :     16016 MB

    Max Processes  :         5
    Max Threads    :         6

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
