| preprocessPARADIGM1 evidence prefix | UCEC |
| preprocessPARADIGM1 expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/UCEC/718809/0.GDAC_mRNA_Preprocess_Median.Finished/UCEC.medianexp.txt |
| preprocessPARADIGM1 copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/UCEC/718068/1.GetReducedSegments.Finished/UCEC.RS.tsv |
| PARADIGMLite2 config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| PARADIGMLite2 run id | 1 |
| Execution Times: | |
| Submitted: | 13:11:26 03-01-12 |
| Completed: | |
| Elapsed: | 00 hrs 04 mins 59 secs |
step 1. preprocessPARADIGM [id: 51111] Preprocessing module for broad data input to PARADIGM
urn:lsid:broadinstitute.org:cancer.genome.analysis:00238:25
| evidence prefix | UCEC |
| expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/UCEC/718809/0.GDAC_mRNA_Preprocess_Median.Finished/UCEC.medianexp.txt |
| copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/UCEC/718068/1.GetReducedSegments.Finished/UCEC.RS.tsv |
| Output Files: | |
| Evidence_UCEC.zip | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 13:11:26 03-01-12 |
| Completed: | 13:13:32 03-01-12 |
| Elapsed: | 00 hrs 02 mins 05 secs |
step 2. PARADIGMLite [id: 51112] PARADIGM allows for pathway level inference using libdai (Written by: Steve Benz and Charles Vaske)
urn:lsid:broadinstitute.org:cancer.genome.analysis:00237:26
| evidence zip | Evidence_UCEC.zip |
| pathway zip | |
| config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| run id | 1 |
| Output Files: | |
| 1-UCEC_pathlette_IPA-paradigmlite-dev.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 13:11:26 03-01-12 |
| Completed: | 13:16:23 03-01-12 |
| Elapsed: | 00 hrs 04 mins 56 secs |