| getCNUseMe1 broadsnp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/HNSC/1216696/2.GDAC_MergeDataFiles.Finished/HNSC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt |
| getCNUseMe1 outfile | HNSC |
| Execution Times: | |
| Submitted: | 18:40:21 14-05-12 |
| Completed: | |
| Elapsed: | 10 hrs 26 mins 44 secs |
step 1. getCNUseMe [id: 90903] Generates a use me level III annotation file for copy number data
urn:lsid:broadinstitute.org:cancer.genome.analysis:00273:19
| hms244 | |
| hms415 | |
| broadsnp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/HNSC/1216696/2.GDAC_MergeDataFiles.Finished/HNSC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt |
| ngs | |
| outfile | HNSC |
| Output Files: | |
| HNSC.Use_Me_Level_3__segmented_cna__seg.tsv | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 18:40:21 14-05-12 |
| Completed: | 05:06:20 15-05-12 |
| Elapsed: | 10 hrs 25 mins 58 secs |