| preprocessPARADIGM1 evidence prefix | KIRP |
| preprocessPARADIGM1 expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/KIRP/1227686/0.GDAC_mRNA_Preprocess_Median.Finished/KIRP.medianexp.txt |
| preprocessPARADIGM1 copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/KIRP/1228786/1.GetReducedSegments.Finished/KIRP.RS.tsv |
| PARADIGMLite2 config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| PARADIGMLite2 run id | 1 |
| Execution Times: | |
| Submitted: | 06:01:07 15-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 01 mins 42 secs |
step 1. preprocessPARADIGM [id: 92051] Preprocessing module for broad data input to PARADIGM
urn:lsid:broadinstitute.org:cancer.genome.analysis:00238:25
| evidence prefix | KIRP |
| expression file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/KIRP/1227686/0.GDAC_mRNA_Preprocess_Median.Finished/KIRP.medianexp.txt |
| copynumber file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/writeReducedSegments/KIRP/1228786/1.GetReducedSegments.Finished/KIRP.RS.tsv |
| Output Files: | |
| Evidence_KIRP.zip | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 06:01:07 15-05-12 |
| Completed: | 06:01:55 15-05-12 |
| Elapsed: | 00 hrs 00 mins 48 secs |
step 2. PARADIGMLite [id: 92052] PARADIGM allows for pathway level inference using libdai (Written by: Steve Benz and Charles Vaske)
urn:lsid:broadinstitute.org:cancer.genome.analysis:00237:26
| evidence zip | Evidence_KIRP.zip |
| pathway zip | |
| config file | file:/xchip/cga/reference/PARADIGM/config.txt |
| run id | 1 |
| Output Files: | |
| 1-KIRP_pathlette_IPA-paradigmlite-dev.txt | |
| .lsf.err | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 06:01:07 15-05-12 |
| Completed: | 06:02:47 15-05-12 |
| Elapsed: | 00 hrs 01 mins 40 secs |