min sampled: 10
max sampled: 20
avg sampled: 15.984556
14 17 15 16 13 16 14 17 14 16 15 17 18 18 16 16 18 17 16 16 15 16 15 15 15 15 17 12 17 16 16 17 16 16 16 16 17 17 15 15 17 16 18 17 16 18 16 17 16 17 16 16 14 15 16 14 16 17 17 14 19 15 15 13 14 16 16 12 16 17 15 17 17 20 13 16 15 19 12 18 16 12 12 16 19 17 15 18 13 19 17 13 15 15 12 17 13 14 13 14 18 15 17 16 18 17 13 16 16 17 17 13 15 17 17 15 18 19 16 18 14 15 15 16 17 17 15 16 14 17 17 19 16 16 17 17 15 16 17 19 12 18 15 14 16 18 18 17 16 15 14 17 17 14 13 17 19 17 15 17 13 17 17 19 13 19 17 17 15 16 19 18 15 16 18 15 20 12 19 14 19 16 13 17 15 17 16 12 16 15 20 17 17 17 16 13 16 18 15 19 17 15 18 16 18 17 15 17 14 14 16 16 16 15 18 16 18 10 20 14 18 15 15 16 13 13 13 16 12 18 17 19 17 16 18 15 16 19 15 18 19 13 16 10 13 17 16 15 15 14 16 14 18 13 17 16 16 16 16 16 16 14 18 16 17 17 13 15 16 16 14 20 19 17 15 14 13 18 16 19 17 17 19 17 16 18 16 14 14 17 15 14 17 13 17 17 17 14 18 19 15 16 15 15 19 19 18 16 17 13 17 14 19 15 18 15 16 16 16 17 13 15 16 19 16 14 19 10 18 18 18 18 15 17 15 12 16 15 14 18 17 16 16 12 17 12 15 16 17 18 16 16 19 18 11 16 18 14 15 17 14 14 13 15 16 13 15 14 16 17 16 16 17 14 14 17 15 17 16 16 16 16 16 16 16 17 15 16 16 14 14 18 14 16 13 18 14 16 16 13 16 18 17 18 15 15 16 14 15 18 15 16 17 18 17 16 14 15 14 17 16 16 14 14 15 13 14 11 18 18 15 17 17 16 14 16 16 18 17 17 15 18 18 17 14 16 13 17 15 17 15 18 17 17 17 18 10 15 17 14 17 15 15 15 16 16 15 20 14 11 17 18 17 17 16 12 17 16 17 17 18 16 16 16 16 16 15 17 16 18 18 16 16 19 16 13 16 15 15 17 16 16 18 15 12 16 18 18 15 19 17 17 15 18 15 16 16 12 15 15 16 17 18 17 13 18 12 14 15 16 17 16 14 17 16 17 15 14 17 13 19 15 16 17 14 17 14 18 17 10 17 19 15 17 18 15 13 17 18 14 16 17 15 15 18 13 18 16 18 17 18 12 16 12 16 20 17 14 16 15 16 18 18 16 16 14 13 16 15 16 15 19 19 13 16 17 15 17 16 15 15 16 17 18 19 14 19 16 18 16 16 17 16 15 19 17 13 15 16 18 17 17 12 13 17 16 18 15 15 18 19 18 18 17 18 13 17 16 17 19 17 18 16 18 15 17 17 14 15 16 17 17 15 17 18 18 18 14 15 17 16 13 16 16 18 17 19 14 15 17 16 15 16 15 16 15 19 17 12 15 15 17 18 15 16 16 17 15 16 14 19 16 17 16 18 15 16 18 15 14 16 18 17 14 19 17 18 16 14 15 17 17 16 16 18 19 17 18 12 18 16 17 17 16 20 17 14 15 17 12 17 19 20 14 18 16 16 13 13 15 19 19 12 17 18 16 17 17 16 14 18 17 16 17 15 16 16 14 14 15 16 13 19 16 15 16 18 13 14 19 13 15 16 16 11 19 18 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub621.2.gct' ..

	processing file 'outputprefix.expclu.sub621.3.gct' ..

	processing file 'outputprefix.expclu.sub621.4.gct' ..

	processing file 'outputprefix.expclu.sub621.5.gct' ..

	processing file 'outputprefix.expclu.sub621.6.gct' ..

	processing file 'outputprefix.expclu.sub621.7.gct' ..

	processing file 'outputprefix.expclu.sub621.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub621.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1655>
Subject: Job 587848: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/110610/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/110610/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <tcga-gdac-genepattern> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/110611> was used as the working directory.
Started at Sun Jun 10 06:30:00 2012
Results reported at Sun Jun 10 06:43:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/110610/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    797.76 sec.
    Max Memory :       733 MB
    Max Swap   :      1100 MB

    Max Processes  :         4
    Max Threads    :        27

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
