Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_TopgenesforCluster1.expfile	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	STAD.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	outputprefix.expclu.sub45.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
GDAC_selectBestcluster3.inputallexp	STAD.mRNAseq_RPKM_tmm_log2.txt	gdac.broadinstitute.org_STAD.mRNAseq_Preprocess.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:14	mRNAseq_Clustering_Consensus_2012052500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_STAD.mRNAseq_Clustering_Consensus.Level_4.2012052500.0.0	yes
