Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BL-A0C8-01A-11D-A10T-01	TCGA-BL-A13I-01A-11D-A13V-01	TCGA-BL-A13J-01A-11D-A10T-01	TCGA-BT-A0S7-01A-11D-A10T-01	TCGA-BT-A0YX-01A-11D-A10T-01	TCGA-BT-A20J-01A-11D-A14V-01	TCGA-BT-A20N-01A-11D-A14V-01	TCGA-BT-A20O-01A-21D-A14V-01	TCGA-BT-A20P-01A-11D-A14V-01	TCGA-BT-A20Q-01A-11D-A14V-01	TCGA-BT-A20R-01A-12D-A16M-01	TCGA-BT-A20T-01A-11D-A14V-01	TCGA-BT-A20U-01A-11D-A14V-01	TCGA-BT-A20V-01A-11D-A14V-01	TCGA-BT-A20W-01A-21D-A14V-01	TCGA-BT-A20X-01A-11D-A16M-01	TCGA-BT-A2LA-01A-11D-A18E-01	TCGA-BT-A2LB-01A-11D-A18E-01	TCGA-C4-A0EZ-01A-21D-A10T-01	TCGA-C4-A0F0-01A-12D-A10T-01	TCGA-C4-A0F6-01A-11D-A10T-01	TCGA-CF-A1HR-01A-11D-A13V-01	TCGA-CF-A1HS-01A-11D-A13V-01	TCGA-CF-A27C-01A-11D-A16M-01	TCGA-CU-A0YN-01A-21D-A10T-01	TCGA-CU-A0YO-01A-11D-A10T-01	TCGA-CU-A0YR-01A-12D-A10T-01	TCGA-DK-A1A3-01A-11D-A13V-01	TCGA-DK-A1A5-01A-11D-A13V-01	TCGA-DK-A1A6-01A-11D-A13V-01	TCGA-DK-A1A7-01A-11D-A13V-01	TCGA-DK-A1AA-01A-11D-A13V-01	TCGA-DK-A1AB-01A-11D-A13V-01	TCGA-DK-A1AC-01A-11D-A13V-01	TCGA-DK-A1AD-01A-11D-A13V-01	TCGA-DK-A1AE-01A-11D-A13V-01	TCGA-DK-A1AF-01A-11D-A13V-01	TCGA-DK-A1AG-01A-11D-A13V-01	TCGA-DK-A2HX-01A-12D-A18E-01	TCGA-DK-A2I1-01A-11D-A17S-01	TCGA-DK-A2I2-01A-11D-A17S-01	TCGA-DK-A2I6-01A-12D-A18E-01	TCGA-E5-A2PC-01A-11D-A201-01	TCGA-FD-A3B3-01A-12D-A201-01	TCGA-FD-A3B4-01A-12D-A201-01	TCGA-FT-A3EE-01A-11D-A201-01	TCGA-G2-A2EF-01A-12D-A18E-01	TCGA-G2-A2EJ-01A-11D-A17S-01	TCGA-G2-A2EK-01A-22D-A18E-01	TCGA-G2-A2EL-01A-12D-A18E-01	TCGA-G2-A2EO-01A-11D-A17S-01	TCGA-G2-A2ES-01A-11D-A17S-01	TCGA-GD-A2C5-01A-12D-A17S-01	TCGA-H4-A2HO-01A-11D-A17S-01	TCGA-H4-A2HQ-01A-11D-A17S-01	TCGA-HQ-A2OE-01A-11D-A201-01	
Amplification Peak  1	1p34.2  	chr1:39531274-40539227(probes 19151:19618)      	chr1:40214945-40539075(probes 19440:19617)      	chr1:39479288-41939633(probes 19129:20323)      	0.001284	   0.001284		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	2	0	0	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	1	
Amplification Peak  2	1q23.3  	chr1:161032152-161109018(probes 73780:73814)  	chr1:161033016-161074091(probes 73781:73798)  	chr1:157730029-172666704(probes 71643:82114)  	6.4603e-06	 6.4603e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	2	0	0	1	2	0	0	0	0	1	0	1	2	0	1	1	1	0	0	0	1	0	0	0	2	1	1	0	2	0	0	2	2	0	0	0	0	2	1	1	1	0	1	1	2	0	0	0	0	0	1	1	2	1	
Amplification Peak  3	3p25.2  	chr3:12481505-12491536(probes 266644:266648)    	chr3:12483452-12485885(probes 266645:266647)    	chr3:11593528-12873264(probes 266020:266933)    	0.00019113	 0.00019113		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	2	0	0	0	2	0	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	0	2	1	1	2	2	0	0	2	1	0	0	0	1	2	0	2	0	0	0	2	0	0	0	0	0	1	0	2	0	1	
Amplification Peak  4	4p16.3  	chr4:1834681-2087048(probes 367237:367307)        	chr4:1922427-2027909(probes 367263:367295)        	chr4:1835547-2236198(probes 367238:367382)        	0.08264	    0.08264		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	
Amplification Peak  5	6p22.3  	chr6:19954909-21887275(probes 583689:584927)    	chr6:21724162-21812241(probes 584848:584895)    	chr6:17731897-23700818(probes 582105:586371)    	2.5141e-11	 2.5141e-11		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	0	0	2	0	0	0	2	0	2	0	2	0	0	0	2	0	2	0	0	0	1	2	1	0	0	2	2	0	0	0	0	1	2	2	0	2	0	1	1	0	0	0	0	0	1	0	0	2	
Amplification Peak  6	6q21    	chr6:107302810-107457456(probes 629200:629286)	chr6:107302956-107451530(probes 629201:629285)	chr6:107208303-107519419(probes 629133:629328)	0.013301	   0.013301		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	2	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Amplification Peak  7	7p21.1  	chr7:15890901-22693349(probes 674425:678169)    	chr7:17059175-17932056(probes 675252:675342)    	chr7:17059175-20204827(probes 675252:676364)    	0.2006	     0.2006		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	1	0	0	2	0	0	0	0	0	0	2	1	0	1	1	0	0	1	0	0	0	2	1	0	1	1	0	2	0	0	1	0	0	0	0	0	2	1	1	0	0	0	2	0	0	0	0	1	0	1	0	0	0	
Amplification Peak  8	8p11.21 	chr8:41413019-42103038(probes 772135:772546)    	chr8:41885121-42099359(probes 772437:772545)    	chr8:41885121-42103321(probes 772437:772548)    	0.2006	     0.2006		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	2	0	0	0	2	0	0	0	0	1	0	2	0	0	0	2	0	0	0	0	0	1	0	0	0	1	
Amplification Peak  9	8q22.3  	chr8:101193622-102354063(probes 803344:804098)	chr8:101710084-101884419(probes 803680:803789)	chr8:98460699-103734105(probes 801972:804938)  	0.00028162	 0.00065284		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	1	0	0	1	1	0	0	0	0	0	0	2	2	1	1	0	1	2	1	0	1	0	0	0	2	0	1	2	2	0	0	1	1	2	0	0	0	2	0	2	0	0	0	1	0	0	2	0	2	1	0	2	2	2	
Amplification Peak 10	8q24.21 	chr8:127580961-129789133(probes 818970:820581)	chr8:128214500-128431693(probes 819454:819601)	chr8:127581611-129793274(probes 818971:820583)	0.00812	     0.1621		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	0	2	1	1	0	0	0	0	0	0	1	2	1	1	0	1	2	1	0	1	0	0	0	2	0	1	1	1	0	0	1	1	1	0	0	0	2	0	1	0	0	0	1	1	0	2	0	2	1	0	0	2	2	
Amplification Peak 11	9p21.3  	chr9:20001648-20953334(probes 841945:842634)    	chr9:20005049-20953232(probes 841946:842633)    	chr9:20005049-20953637(probes 841946:842636)    	0.037143	   0.037143		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	2	1	0	0	0	0	1	0	0	0	
Amplification Peak 12	10p15.1 	chr10:4197255-9011874(probes 900080:903858)      	chr10:5610350-5843690(probes 901203:901307)      	chr10:5610350-5847682(probes 901203:901310)      	0.021704	   0.021704		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	0	0	0	1	0	0	2	2	0	0	1	0	0	0	1	2	0	0	0	1	0	0	0	0	1	1	1	0	0	0	2	2	0	0	0	2	1	0	1	0	1	0	2	0	0	0	0	2	2	0	0	0	1	
Amplification Peak 13	11q13.3 	chr11:69399184-70027203(probes 1015231:1015552)	chr11:69841749-70025076(probes 1015429:1015551)	chr11:67294309-70421705(probes 1014386:1015747)	0.00064088	 0.00064088		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	0	
Amplification Peak 14	12p13.33	chr12:1-8696490(probes 1056074:1060389)           	chr12:2058818-2083736(probes 1056376:1056386)    	chr12:1944820-2085385(probes 1056327:1056389)    	0.20449	    0.20449		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	0	0	2	1	0	1	0	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	
Amplification Peak 15	12q15   	chr12:69120903-70175610(probes 1092639:1093366)	chr12:69162502-69250480(probes 1092660:1092739)	chr12:68946029-73662796(probes 1092550:1095338)	1.3749e-06	 1.3749e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	2	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	1	1	0	1	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	1	2	2	
Amplification Peak 16	17p11.2 	chr17:18860536-25270799(probes 1330409:1331208)	chr17:19468013-19712978(probes 1330580:1330713)	chr17:18860764-20253412(probes 1330410:1330873)	0.16968	    0.18636		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	
Amplification Peak 17	17q11.2 	chr17:1-81195210(probes 1321567:1358569)         	chr17:27684133-27813031(probes 1332318:1332360)	chr17:27388958-27891863(probes 1332176:1332391)	0.049308	     0.7809		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	1	2	0	0	2	1	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	2	0	2	0	1	1	
Amplification Peak 18	17q11.2 	chr17:30362410-30948552(probes 1333406:1333702)	chr17:30544240-30779048(probes 1333479:1333586)	chr17:30363869-30976521(probes 1333407:1333716)	0.062699	    0.19991		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	2	2	0	0	2	1	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	2	0	1	1	
Amplification Peak 19	17q12   	chr17:37813857-37905815(probes 1336769:1336846)	chr17:37816080-37904210(probes 1336770:1336845)	chr17:37623532-38371430(probes 1336695:1337026)	4.6529e-05	 0.00010774		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	2	0	2	2	1	0	0	0	1	0	0	0	0	1	1	2	0	0	0	1	0	0	0	0	0	0	0	1	1	1	
Amplification Peak 20	19q13.2 	chr19:39345770-39421387(probes 1417235:1417256)	chr19:39353062-39416408(probes 1417236:1417255)	chr19:38027791-39807381(probes 1416541:1417373)	0.00042306	 0.00042306		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	1	2	0	0	0	2	0	0	1	1	0	2	0	1	0	1	0	2	0	0	0	0	0	2	1	2	0	1	1	2	0	0	0	2	0	0	2	0	0	0	1	1	0	0	0	1	0	0	0	1	0	
Deletion Peak  1	2q22.1  	chr2:139655617-143637838(probes 201417:203847)	chr2:140976294-142894275(probes 202139:203410)	chr2:141647344-142558126(probes 202519:203177)	2.49e-07	 1.8609e-06		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	
Deletion Peak  2	2q34    	chr2:1-243199373(probes 129202:260562)           	chr2:212238542-213412425(probes 242170:242885)	chr2:212812791-212815800(probes 242528:242529)	0.077883	    0.23216		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	1	
Deletion Peak  3	2q37.1  	chr2:219433377-243199373(probes 246671:260562)	chr2:233734084-234686156(probes 255167:255723)	chr2:231151889-236911003(probes 253996:257333)	0.014805	    0.06795		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	1	
Deletion Peak  4	3p21.31 	chr3:39847073-77701069(probes 283096:305226)    	chr3:48597554-48661590(probes 287772:287793)    	chr3:45987981-51956386(probes 286575:289092)    	0.077375	   0.077375		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	1	0	1	0	1	0	0	1	1	
Deletion Peak  5	3p11.2  	chr3:1-198022430(probes 260563:366989)          	chr3:87247201-87328364(probes 310037:310067)    	chr3:87290019-87296024(probes 310047:310048)    	0.24825	    0.24365		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	1	0	0	1	0	0	0	0	0	0	1	0	
Deletion Peak  6	4q22.1  	chr4:91148280-93240505(probes 416995:418054)    	chr4:91035787-92526033(probes 416944:417742)    	chr4:91492843-92063737(probes 417176:417550)    	3.5663e-07	 3.5663e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	1	1	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	1	0	1	1	0	1	0	
Deletion Peak  7	5q11.2  	chr5:58260298-59787985(probes 500877:501821)    	chr5:58260298-59787985(probes 500877:501821)    	chr5:58277993-65311984(probes 500893:504566)    	1.0387e-05	 1.0387e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	1	0	0	0	0	1	0	1	0	0	1	1	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	1	0	1	1	
Deletion Peak  8	6p25.3  	chr6:1-6001716(probes 570337:573854)              	chr6:1621405-2414428(probes 570851:571362)        	chr6:1910717-1917085(probes 571060:571061)        	0.11868	    0.11674		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  9	6q21    	chr6:93944741-122757952(probes 622096:637842)  	chr6:108875809-109007976(probes 630152:630227)	chr6:101240328-116234954(probes 625665:634523)	0.015461	   0.015461		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	1	
Deletion Peak 10	6q25.2  	chr6:151178235-171115067(probes 655499:666875)	chr6:155052439-155159219(probes 658282:658327)	chr6:154800019-155124582(probes 658164:658314)	0.16838	    0.17151		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	1	
Deletion Peak 11	9p23    	chr9:8310705-12693402(probes 834366:836108)      	chr9:8310705-10619051(probes 834366:835700)      	chr9:9216981-9221296(probes 835034:835035)        	0.058678	   0.098172		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	1	0	0	1	0	1	0	0	1	0	1	1	0	1	0	0	0	1	0	0	0	1	0	0	0	1	1	0	0	0	0	1	0	1	0	0	1	0	1	0	0	1	0	0	1	0	0	0	0	1	
Deletion Peak 12	9p21.3  	chr9:21865498-22448737(probes 843261:843625)    	chr9:21959052-21977193(probes 843312:843313)    	chr9:20860496-24075081(probes 842578:844705)    	6.0681e-35	 1.3041e-34		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	1	0	2	1	0	2	1	1	1	1	0	1	0	1	1	1	0	2	0	0	0	1	1	0	0	2	1	0	0	2	0	2	0	1	0	0	2	0	0	0	1	0	0	0	1	0	0	0	2	1	
Deletion Peak 13	9q22.33 	chr9:101830398-101979393(probes 873892:873978)	chr9:101864709-101918083(probes 873912:873947)	chr9:101903956-101907671(probes 873930:873931)	0.068736	   0.068736		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	0	1	1	0	1	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	1	0	1	0	0	1	
Deletion Peak 14	10q25.2 	chr10:83636583-133778894(probes 946181:978316)	chr10:89577212-133113573(probes 950058:978273)	chr10:89560539-89641300(probes 950053:950117)  	0.16929	    0.17151		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	
Deletion Peak 15	12p13.2 	chr12:1-133851895(probes 1056074:1130051)       	chr12:11477352-11718581(probes 1061644:1061757)	chr12:11477536-11582896(probes 1061645:1061646)	0.23106	    0.23216		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Deletion Peak 16	13q14.11	chr13:39915647-67864428(probes 1142988:1157451)	chr13:41484888-47375865(probes 1144073:1147649)	chr13:40853126-44166875(probes 1143674:1145624)	0.014805	   0.014805		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	1	1	0	1	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	
Deletion Peak 17	15q13.1 	chr15:24927774-32934882(probes 1236731:1239443)	chr15:28097279-31135788(probes 1238873:1238887)	chr15:28482239-28488887(probes 1238881:1238882)	0.13153	    0.12546		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	
Deletion Peak 18	16p13.3 	chr16:3764793-4013466(probes 1281658:1281808)    	chr16:3773626-3933344(probes 1281662:1281764)    	chr16:3036552-4037917(probes 1281375:1281824)    	0.0066248	  0.0066248		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	1	0	1	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	1	0	0	1	0	1	1	
Deletion Peak 19	16q23.1 	chr16:54313638-90354753(probes 1299680:1321566)	chr16:78129058-79247026(probes 1313978:1314991)	chr16:78583258-78586506(probes 1314485:1314486)	0.20572	    0.19592		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	
Deletion Peak 20	17p12   	chr17:14131834-15999789(probes 1329033:1329177)	chr17:15878311-15905595(probes 1329123:1329133)	chr17:12946229-17325950(probes 1328219:1329773)	0.00078231	 0.00078231		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	1	1	1	0	1	0	1	0	1	0	0	0	0	1	1	1	0	1	1	1	0	0	0	0	1	0	0	2	0	1	0	1	1	0	1	1	0	1	0	2	1	
Amplification Peak  1 - CN values	1p34.2  	chr1:39531274-40539227(probes 19151:19618)      	chr1:40214945-40539075(probes 19440:19617)      	chr1:39479288-41939633(probes 19129:20323)      	0.001284	   0.001284		Actual Copy Change Given	-0.072274	-0.0008917	-0.033269	-0.18383	0.016063	6	0.096785	0.028446	0.015688	-0.0022168	0.75452	-0.17774	0.023808	-0.016142	0.015308	0.034012	0.39252	-0.0027707	0.18662	0.096807	-0.00069303	-0.27337	1.4248	0.086666	0.11741	-0.13625	-0.34765	2.0173	0.00564	-0.51774	1.8555	0.027638	0.48768	-0.024682	-0.052861	0.0036421	-0.097043	0.0072062	0	0.41999	-0.28774	0	-0.24292	-0.0025358	0.0075299	-0.06585	0	0.0021515	0.040326	0.73587	-0.022195	0.0037465	6	-0.091749	0.035383	0.57864	
Amplification Peak  2 - CN values	1q23.3  	chr1:161032152-161109018(probes 73780:73814)  	chr1:161033016-161074091(probes 73781:73798)  	chr1:157730029-172666704(probes 71643:82114)  	6.4603e-06	 6.4603e-06		Actual Copy Change Given	2.7564	-0.0058917	4.7146	0.14905	-0.00027724	0.38014	1.2018	0.028446	0.0024152	-0.0047079	0.014051	0.61756	0.023808	0.42867	1.8995	0.034012	0.46468	0.33755	0.89809	0.10646	-0.0027088	0.030098	0.60467	-0.00028302	0	-0.13625	1.5247	0.38705	0.39164	-0.0066432	3.3945	0.07743	0.001334	1.6048	2.1391	0.00030978	0.00095063	0.0080567	-0.27984	2.7214	0.44172	0.87229	0.49556	-0.0025358	0.52743	0.43453	0.98121	-0.0014264	0.021183	0.022304	-0.022195	-0.0053992	0.61124	0.61643	2.9341	0.63973	
Amplification Peak  3 - CN values	3p25.2  	chr3:12481505-12491536(probes 266644:266648)    	chr3:12483452-12485885(probes 266645:266647)    	chr3:11593528-12873264(probes 266020:266933)    	0.00019113	 0.00019113		Actual Copy Change Given	6	0.21503	0.95652	-0.03467	-0.0063668	0.011619	1	-0.0025959	-0.0051459	-0.0018014	0.061137	-0.061521	0.012453	-0.46455	0.82255	-0.34753	0.43041	0.33593	-0.17139	-0.15176	0.0069298	0.56947	-0.23892	0.016705	-0.21881	0.15224	4.0481	0.342	0.40761	1.0025	1.4596	0	-0.54317	1.2474	0.44122	-0.010784	0.0020805	0.0055529	0.31241	3.1046	-0.26997	1.8734	-0.44439	-0.063185	-0.18538	1.1191	0.094491	-0.62446	0.0087528	0.023005	0.28897	0.49528	-0.0090763	5.9475	-0.21404	0.88148	
Amplification Peak  4 - CN values	4p16.3  	chr4:1834681-2087048(probes 367237:367307)        	chr4:1922427-2027909(probes 367263:367295)        	chr4:1835547-2236198(probes 367238:367382)        	0.08264	    0.08264		Actual Copy Change Given	2.6531	-0.002873	-0.11352	-0.05725	-0.0073339	-0.32327	0.090391	-0.0084887	6	0.0097276	-0.2818	0.93656	-0.0022168	-0.47264	-0.3131	-0.14307	-0.063977	-0.3356	-0.094064	0.28342	0.32882	-0.25425	-0.32946	1.424	-0.068261	-0.19257	-0.025506	-0.0065889	0.43429	0.49303	-0.43669	0.0069333	0.018243	0.44223	-0.44609	0.0026357	0.001803	0	-0.38504	-0.38302	0.34534	0.21407	-0.013156	-0.1613	0.034775	-0.092586	-0.16485	0.001803	0.0052749	0.0079175	0.53465	0.46827	-0.45617	0.64341	-0.53327	-0.065298	
Amplification Peak  5 - CN values	6p22.3  	chr6:19954909-21887275(probes 583689:584927)    	chr6:21724162-21812241(probes 584848:584895)    	chr6:17731897-23700818(probes 582105:586371)    	2.5141e-11	 2.5141e-11		Actual Copy Change Given	0.0055529	-0.0031499	0.80461	0.12417	-0.0038779	-0.012374	-0.094207	-0.0008096	-0.0097109	-0.0047079	5.0945	0.0023973	0.073579	0.0024018	1.9556	-0.35164	6	-0.34696	6	0.12917	-0.017391	-0.10939	3.5535	0.013353	2.5517	-0.00092044	-0.041855	0.021104	0.41513	3.2736	0.49985	0.0026369	-0.54995	5.5037	5.5303	-0.0031033	0.0743	-0.0034627	-0.2856	0.57833	2.6053	1.0398	0.20256	2.6062	0.0091277	0.56418	0.52433	0.00030152	-0.01037	0	-0.197	-0.012691	0.33193	-0.0084385	-0.24557	0.96578	
Amplification Peak  6 - CN values	6q21    	chr6:107302810-107457456(probes 629200:629286)	chr6:107302956-107451530(probes 629201:629285)	chr6:107208303-107519419(probes 629133:629328)	0.013301	   0.013301		Actual Copy Change Given	0.052668	-0.0056336	-0.00097017	0.1353	-0.011566	6	-0.15736	-0.0008096	-0.01074	-0.0061348	-0.019726	-0.83541	0.072473	-0.40833	0.075847	-0.02003	0.50221	-0.34423	-0.027663	-0.1301	-0.017391	-0.23924	0.11242	-0.023136	-0.023222	-0.00092044	0.39559	2.8311	0.006109	-0.53317	6	-0.0067813	-0.54995	0.42251	-0.049318	0.0070791	-0.039529	-0.016833	-0.28549	-0.39464	-0.15784	-0.47258	-0.80319	0.028631	-0.0091658	-0.070812	0.037641	0.00083195	-0.01037	0.025812	-0.16421	-0.51406	0.37712	0.0026709	-0.94558	-1.1415	
Amplification Peak  7 - CN values	7p21.1  	chr7:15890901-22693349(probes 674425:678169)    	chr7:17059175-17932056(probes 675252:675342)    	chr7:17059175-20204827(probes 675252:676364)    	0.2006	     0.2006		Actual Copy Change Given	0.6383	-0.0024577	0.46246	0.43598	-0.0044312	-0.0065794	0.99357	0.13835	-0.0052041	0.0012293	0.020763	0.023461	0.022493	0.95906	0.52328	0.24736	0.31017	0.33351	0.094491	-0.053079	0.74461	0.075774	0.10162	0.0065262	6	0.44584	-0.018514	0.32341	0.39861	0.022585	2.2996	-0.0015061	0.0072217	0.47701	0	0.038913	0.042202	0.0030522	0.092434	1.0591	0.66217	0.65608	0.12301	0.21464	0.080172	1.6861	0.017963	-0.0044312	0.0044411	-0.011887	0.3161	0.0055529	0.37551	-0.0080244	0.1076	-0.024648	
Amplification Peak  8 - CN values	8p11.21 	chr8:41413019-42103038(probes 772135:772546)    	chr8:41885121-42099359(probes 772437:772545)    	chr8:41885121-42103321(probes 772437:772548)    	0.2006	     0.2006		Actual Copy Change Given	-0.31354	0.0012281	-0.017803	-0.053341	0.0013868	0.022369	0.44781	0.00059272	-0.007366	0.010652	-0.26721	-0.052444	0.0022193	-0.008801	3.7717	0.04362	-0.028901	-0.21503	-0.6192	-0.5607	0.68515	0.025031	-0.39886	0.1901	0.2877	-0.082621	-0.36172	-0.33301	-0.88202	1.7777	4.4833	0.021877	0.0082158	-0.028765	1.3251	-0.0065535	0.0037465	0.010564	-0.26432	0.52293	0.058937	1.9674	0.15082	0.025348	-0.05472	1.0949	-0.42876	-0.0029071	-0.43138	0.04812	-0.023155	0.51064	-0.95049	-0.0041798	-0.58755	0.52645	
Amplification Peak  9 - CN values	8q22.3  	chr8:101193622-102354063(probes 803344:804098)	chr8:101710084-101884419(probes 803680:803789)	chr8:98460699-103734105(probes 801972:804938)  	0.00028162	 0.00065284		Actual Copy Change Given	2.4875	0.0012281	0.83373	-0.051451	0.0013868	0.30303	0.5634	0.0051359	-0.007366	0.010652	0.034202	0.15421	0.0022193	0.94821	1.5325	0.34019	0.37866	0.20526	0.61385	0.95555	0.33707	0.025031	0.61752	0.19063	0.2877	-0.0083085	3.4188	0.20808	0.41613	5.3912	3.1181	0.023504	0.021043	0.86871	0.62731	1.4445	0.0037465	-0.0035236	0.049114	1.0179	0.058937	2.4064	0.022446	0.025348	-0.072929	0.86715	0.023005	0.010842	0.95722	0.04429	2.3527	0.51064	0.010163	4.5283	1.0652	0.98952	
Amplification Peak 10 - CN values	8q24.21 	chr8:127580961-129789133(probes 818970:820581)	chr8:128214500-128431693(probes 819454:819601)	chr8:127581611-129793274(probes 818971:820583)	0.00812	     0.1621		Actual Copy Change Given	0.4951	0.0012281	0.83373	-0.0501	2.302	0.30145	0.86488	0.0051359	0.0018621	0.010652	0.034202	0.14091	0.004719	0.88373	1.3348	0.34019	0.31604	0.19597	0.52066	6	0.33707	0.027989	0.61752	0.19886	0.28679	-0.0083085	3.5793	0.19796	0.41898	0.48958	0.40694	0.023504	0.021043	0.77987	0.62731	0.76083	0.0037465	0.017264	-0.59886	1.0179	0.058937	0.3633	0.022446	0.025348	-0.10885	0.88686	0.45275	0.010842	0.93804	0.04429	3.9418	0.56632	0.010163	0.0015255	1.0652	0.9702	
Amplification Peak 11 - CN values	9p21.3  	chr9:20001648-20953334(probes 841945:842634)    	chr9:20005049-20953232(probes 841946:842633)    	chr9:20005049-20953637(probes 841946:842636)    	0.037143	   0.037143		Actual Copy Change Given	-0.43474	-0.6791	0.0049969	0.4536	-0.47349	-0.29834	-0.58959	-0.0027707	6	-0.65361	0	-0.7078	-0.0016629	6	-0.57002	-0.093498	-0.54007	-0.3392	0.027778	-0.32171	-0.42549	-0.37041	-0.053476	-0.86279	0.17966	-0.24672	0.25712	-0.68493	-0.41278	-0.0038779	-0.052936	-1.5	-0.5352	0.8689	0.30256	-0.0042929	-0.14181	-0.92518	0.017544	-0.40025	0.058531	0.35011	-0.77614	0.14072	0.023804	-0.062361	2.6266	0.59244	-0.0008316	0.031999	-0.32246	-0.023155	0.79745	0.001803	-0.24399	-0.54063	
Amplification Peak 12 - CN values	10p15.1 	chr10:4197255-9011874(probes 900080:903858)      	chr10:5610350-5843690(probes 901203:901307)      	chr10:5610350-5847682(probes 901203:901310)      	0.021704	   0.021704		Actual Copy Change Given	0.61933	-0.00028032	0.75777	0.096593	0.0034687	0.030516	0.7537	-0.0072903	0.0093597	2.3451	0.90855	0.0051705	-0.35886	0.42089	0.25558	0	-0.57259	0.33448	0.93101	-0.40689	0.14384	0.027848	0.39147	-0.18814	0.043015	-0.088194	-0.35667	0.62936	0.77541	0.49424	0.0055529	0.0079483	-0.0089906	2.0572	1.3001	-0.0059436	0.098997	0.0091705	2.8703	0.39595	-0.28049	0.5601	-0.29853	0.4119	-0.64213	1.1897	0.071678	-0.011798	0.046842	-0.8617	5.7672	1.1093	0.27546	-0.010094	0.045598	0.75894	
Amplification Peak 13 - CN values	11q13.3 	chr11:69399184-70027203(probes 1015231:1015552)	chr11:69841749-70025076(probes 1015429:1015551)	chr11:67294309-70421705(probes 1014386:1015747)	0.00064088	 0.00064088		Actual Copy Change Given	-0.17158	-0.0022639	1.4902	0	0.00458	-0.046385	0.093727	-0.0030475	-0.0039593	-0.0089906	0.010982	0.0096555	0.0011093	-0.49086	0.053094	0.058978	0.41178	0.0024969	-0.33641	0	0.11663	-0.0058838	0.17996	0.011121	0.21335	0.1231	0.56522	0.29874	6	6	-0.13147	0.0051359	-0.0049844	-0.47849	0.073546	-0.0048461	0.0033299	-0.0012473	0.019083	0.39991	0.24482	0.17875	0.14426	0.05553	-0.0032285	-0.084106	-0.0044438	-0.00165	-0.0008316	-0.017116	-0.055634	4.1761	0.37514	-0.038714	2.2717	0.23413	
Amplification Peak 14 - CN values	12p13.33	chr12:1-8696490(probes 1056074:1060389)           	chr12:2058818-2083736(probes 1056376:1056386)    	chr12:1944820-2085385(probes 1056327:1056389)    	0.20449	    0.20449		Actual Copy Change Given	0.32801	0.0051721	-0.040073	0.042732	-0.00013862	2.9766	0.72487	-0.0086894	0.88554	0.074169	0.17435	-0.0069805	-0.0011087	3.732	4.7374	0.17985	0.31642	0.20824	-0.036129	0.16865	-0.0044312	0.038344	0.09217	0.0097276	0.29995	0.055859	0.50166	-0.054901	0.012655	0.45122	-0.078943	0.0041632	0.0066653	-0.47279	-0.012576	0.0022193	-0.0018753	0.016705	0.057511	0.043294	0	-0.0095426	-0.2649	0.19599	-0.00019424	-0.050252	-0.0078863	-0.0066455	-0.016292	0.062223	0.2321	0.0095883	-0.083316	-0.007472	0.0016731	1.3142	
Amplification Peak 15 - CN values	12q15   	chr12:69120903-70175610(probes 1092639:1093366)	chr12:69162502-69250480(probes 1092660:1092739)	chr12:68946029-73662796(probes 1092550:1095338)	1.3749e-06	 1.3749e-06		Actual Copy Change Given	0.33694	0.0010068	0.30521	6	0	0.33439	0.021566	0.0027834	0.85356	0.074169	0.17435	0.010877	-0.0029664	0.63318	-0.017214	0.17562	-0.024524	0.20824	0.069382	-0.32543	6	0.038344	0.09217	0.00013863	-0.33029	0.43975	0.60067	0.28893	0.38998	0.48716	4.7683	-0.0021593	0.0043508	0.45947	-0.012576	0.0022193	0.0051359	-0.0069627	0.046842	0.039478	0	-0.16434	-0.27681	-0.020454	0.0071789	-0.040209	0.41279	0.016845	6	0.076566	0.2958	0.046559	0.0052918	0.68812	4.6401	1.2551	
Amplification Peak 16 - CN values	17p11.2 	chr17:18860536-25270799(probes 1330409:1331208)	chr17:19468013-19712978(probes 1330580:1330713)	chr17:18860764-20253412(probes 1330410:1330873)	0.16968	    0.18636		Actual Copy Change Given	-0.23337	0.00013851	-0.12564	0.24295	0.016146	-0.28745	-0.15395	0.062125	-0.91782	6	0.21822	-0.72674	0.10643	-0.076909	0.1604	-0.35735	0.40878	-0.35795	0.97874	-0.36023	-0.01037	0.40003	-0.28182	-0.88186	0.045566	-0.2319	0.2539	0.60547	-0.47279	1.9196	0.6007	0.01447	-0.55106	-0.5101	-0.06048	-0.013509	-0.037354	0.017449	-0.28335	-0.48155	0.38125	-0.26597	-0.76514	-0.024977	-0.62431	0.52396	0.93752	-0.6393	0.013074	-0.024935	0.12255	-0.072408	-0.57456	-0.044009	-0.012851	-0.66826	
Amplification Peak 17 - CN values	17q11.2 	chr17:1-81195210(probes 1321567:1358569)         	chr17:27684133-27813031(probes 1332318:1332360)	chr17:27388958-27891863(probes 1332176:1332391)	0.049308	     0.7809		Actual Copy Change Given	-0.2407	0.00013851	0.27631	0.24295	0.016146	0.022509	-0.1457	0.062125	0.86144	0.5833	0.21822	0.54846	0.10643	-0.076909	0.1604	-0.073472	-0.033541	-0.0034689	0.54625	0.070665	-0.01037	0.40003	-0.32519	0.00082323	0.045566	-0.043146	0.2539	-0.053865	0.41647	0.39114	2.6168	0.01447	-0.55106	4.8766	0.43699	-0.013509	-0.037354	0.017449	0.024969	0.39363	0.38125	-0.26597	0.18901	-0.024977	0.03407	0.52396	-0.41102	-0.031496	0.013074	-0.024935	3.6334	-0.074928	1.5431	-0.044009	0.50615	0.82943	
Amplification Peak 18 - CN values	17q11.2 	chr17:30362410-30948552(probes 1333406:1333702)	chr17:30544240-30779048(probes 1333479:1333586)	chr17:30363869-30976521(probes 1333407:1333716)	0.062699	    0.19991		Actual Copy Change Given	0.090575	0.00013851	0.27631	0.24295	0.016146	0.022509	-0.44008	0.062125	0.86144	0.5833	0.21822	-0.0093119	0.10643	-0.036305	0.1604	-0.073472	-0.045499	-0.0034689	0.54625	0.070665	-0.01037	0.40003	6	0.00082323	0.045566	-0.043146	0.2539	-0.053865	-0.026577	1.3594	1.3323	0.01447	-0.55106	2.7502	0.43699	-0.013509	-0.037354	0.017449	0.024969	-0.035176	0.38125	0.00069327	0.18901	-0.024977	0.03407	0.52396	0.40277	-0.031496	0.013074	-0.024935	0.071966	-0.056038	1.1648	-0.024114	0.50615	0.82943	
Amplification Peak 19 - CN values	17q12   	chr17:37813857-37905815(probes 1336769:1336846)	chr17:37816080-37904210(probes 1336770:1336845)	chr17:37623532-38371430(probes 1336695:1337026)	4.6529e-05	 0.00010774		Actual Copy Change Given	0.090575	0.00013851	0.27631	0.24295	0.016146	0.022509	-0.45113	0.062125	0.86144	0.5833	0.21822	0.0021151	0.10643	-0.036305	0.1604	0.11848	-0.54027	-0.0034689	0.54625	0.070665	-0.01037	0.40003	-0.30721	0.00597	0.045566	-0.043146	6	-0.053865	6	5.1806	0.4951	0.01447	-0.0083005	-0.021098	0.43699	-0.013509	-0.037354	0.017449	0.024969	0.38634	0.32253	6	0.18901	-0.024977	0.03407	0.52396	-0.019726	-0.031496	0.013074	-0.04211	0.071966	-0.056038	-0.108	0.61625	0.50615	0.82943	
Amplification Peak 20 - CN values	19q13.2 	chr19:39345770-39421387(probes 1417235:1417256)	chr19:39353062-39416408(probes 1417236:1417255)	chr19:38027791-39807381(probes 1416541:1417373)	0.00042306	 0.00042306		Actual Copy Change Given	-0.076812	-0.011437	0.2523	-0.012989	0.015168	0.4807	0.91596	0.28913	-0.015272	-0.014641	1.9925	-0.033098	-0.0449	0.35534	0.65204	0.13914	1.9992	0.23096	0.32414	0.22175	0.45207	0.061579	2.0857	0.00059268	-0.34527	-0.010045	0.26873	-0.42719	4.4755	0.42805	3.6026	0.018153	0.48217	0.361	2.0083	-0.017116	-0.014228	0.028903	1.2346	-0.038034	-0.028355	5.8817	0.15888	0.10276	0.032942	0.4951	0.55478	-0.019846	0.016845	-0.085988	0.65038	-0.10171	0.11787	-0.033151	0.57523	0.27255	
Deletion Peak  1 - CN values	2q22.1  	chr2:139655617-143637838(probes 201417:203847)	chr2:140976294-142894275(probes 202139:203410)	chr2:141647344-142558126(probes 202519:203177)	2.49e-07	 1.8609e-06		Actual Copy Change Given	0.040326	-0.34145	0.31129	-0.038172	-0.011473	0.19961	0.23577	0.026935	-0.92738	-0.0066014	0.0030522	-0.16227	-0.00956	-0.96464	-0.065179	0.095114	-0.47147	0.3031	-0.53784	-0.012721	-0.40981	0.0387	1.7877	0.0013868	-0.30686	0.023095	0.21651	-0.30998	0.025812	0.45615	-0.29449	-0.0090579	-0.0080244	0.026641	0.06494	-0.050147	0.0049151	-0.013044	-0.55279	-0.7489	0.30977	-0.054825	0.16397	-0.050006	0	-0.0018669	-1.3062	-1.2062	0.0043021	-0.76598	-0.0088177	0.03863	-0.0059467	-0.0056757	0.086923	-0.0099712	
Deletion Peak  2 - CN values	2q34    	chr2:1-243199373(probes 129202:260562)           	chr2:212238542-213412425(probes 242170:242885)	chr2:212812791-212815800(probes 242528:242529)	0.077883	    0.23216		Actual Copy Change Given	-0.030131	0.007258	-0.44286	-0.0052895	-0.011473	-0.36528	-0.229	0.026935	0.0057491	0.0061184	0.0030522	-0.14087	-0.0051227	-0.43762	-0.11101	0.095114	-0.46014	0.30441	-0.51405	-0.012721	0.011679	0.057439	-0.27488	-0.0090702	-0.30686	0.023095	0.22207	0.0015863	-0.41685	-0.049609	0.3486	-0.0070576	-0.0080244	-0.4448	0.06494	0.020483	-0.0018014	-0.010508	-0.54573	-0.30629	-0.27535	0.058367	0.13714	-0.050006	-0.2546	0.0068044	-0.36816	0.030451	-0.40207	-0.76482	0.035323	0.03863	-0.01655	-0.012851	0.090141	-0.59077	
Deletion Peak  3 - CN values	2q37.1  	chr2:219433377-243199373(probes 246671:260562)	chr2:233734084-234686156(probes 255167:255723)	chr2:231151889-236911003(probes 253996:257333)	0.014805	    0.06795		Actual Copy Change Given	-0.047531	0.007258	-0.4723	-0.0092666	-0.011473	-0.32095	-0.56557	0.026935	0.033748	-0.64846	0.0030522	-0.14813	-0.0051227	-0.46169	-0.197	-0.36204	-0.50245	0.30441	-0.60344	-0.012721	-0.010784	-0.28257	-0.27488	-0.0090702	-0.30686	0.023095	-0.37887	-0.02378	-0.42691	-0.037169	0.3486	-0.0070576	-0.0080244	-0.48323	-0.36068	0.013074	-0.0018014	-0.94591	-0.56406	-0.30629	-0.021882	0.058367	0.13339	-0.050006	-0.2546	0.0068044	-0.36816	0.0097276	-0.40207	-1.5	0.0027745	0.0075	-0.01655	-0.012851	0.02097	-0.68952	
Deletion Peak  4 - CN values	3p21.31 	chr3:39847073-77701069(probes 283096:305226)    	chr3:48597554-48661590(probes 287772:287793)    	chr3:45987981-51956386(probes 286575:289092)    	0.077375	   0.077375		Actual Copy Change Given	-0.032314	0.21503	0.37202	-0.029584	-0.0063668	-0.3014	0.01192	-0.0025959	-0.015193	-0.0018014	-0.020319	-0.72736	0.012453	-0.45957	-0.0092666	-0.34753	0.43041	-0.018216	-0.16472	-0.15176	0.0069298	0.50061	-0.56813	-0.00041585	-0.21881	-0.28568	0.31784	0.342	0.40761	-0.52852	0.010374	0	-0.54317	-0.036129	0.44122	0.00013863	0.0020805	-0.02049	0.32036	0.03214	-0.26997	0.78984	-0.86862	0.029845	-0.63238	1.1191	-0.3773	-0.62892	0.0087528	-0.83163	0.19735	-0.50753	-0.0090763	0.61027	-0.56176	-0.64403	
Deletion Peak  5 - CN values	3p11.2  	chr3:1-198022430(probes 260563:366989)          	chr3:87247201-87328364(probes 310037:310067)    	chr3:87290019-87296024(probes 310047:310048)    	0.24825	    0.24365		Actual Copy Change Given	-0.067726	0.21503	0.42873	-0.032178	-0.0063668	0.074574	0.038875	0.0055529	-0.015193	-0.0018014	-0.020319	0	0.012453	-0.45416	-0.055678	0.17112	-0.044686	0.35088	4.0139	-0.15176	0	0.55506	-0.27595	-0.024173	-0.21881	0.15746	-0.36869	0.6925	-0.020687	0.97378	0.010374	0	-0.54595	0.039264	-0.45929	0.00055459	0.00458	-0.02049	0.32036	0.03214	-0.42484	0.73587	-0.47518	0.029845	-0.65626	1.1784	0.64286	-0.617	-0.007472	0.010564	0.19735	0.11079	0.045016	0.0043021	-1.2853	1.1771	
Deletion Peak  6 - CN values	4q22.1  	chr4:91148280-93240505(probes 416995:418054)    	chr4:91035787-92526033(probes 416944:417742)    	chr4:91492843-92063737(probes 417176:417550)    	3.5663e-07	 3.5663e-07		Actual Copy Change Given	0	-0.36734	-0.044822	-0.031486	-0.010646	0.0031163	-0.038614	0.0048579	-0.0067245	-0.00046947	-0.8575	-0.046189	-0.4826	-0.41763	-0.074811	0.079632	-0.03749	-0.3356	0.039195	-0.31413	-0.43159	-0.25425	-0.10447	-0.012989	-0.3267	-0.27847	-0.37421	-0.30992	0.41137	0.00020057	-0.88085	-0.0069019	0.020483	-0.040929	-0.23104	0.013492	0.001803	0	-0.17348	-0.31155	-0.25719	-0.14567	-0.76091	-0.15826	-0.028076	-0.057222	-0.36873	0.41112	-0.018353	-0.8313	0.0056919	-0.4611	-0.40206	0.0012481	-0.49423	0.024986	
Deletion Peak  7 - CN values	5q11.2  	chr5:58260298-59787985(probes 500877:501821)    	chr5:58260298-59787985(probes 500877:501821)    	chr5:58277993-65311984(probes 500893:504566)    	1.0387e-05	 1.0387e-05		Actual Copy Change Given	-0.35293	-0.017218	0.46161	-0.16044	-0.0083005	-0.3143	-0.37419	0.0050215	0.88245	-0.0069195	-0.27226	-0.53873	-0.0064698	-0.43275	-0.14631	-0.056269	-1.1393	-0.36899	-0.012989	0.082179	-0.41838	-0.20641	-0.40588	0.011205	-0.029584	-0.015975	-0.044032	0.014251	-0.42778	-0.0024938	-0.9892	0.0013529	0.011539	0.45496	-0.44189	-0.0015243	-0.0035609	-0.00032608	0.044148	-0.40074	-0.0075447	-0.17449	-0.31885	-0.044321	-0.038348	0.52363	-0.84379	0.0043021	-0.014228	-0.84571	-0.0059972	0.031436	-0.41167	-0.00041585	-0.56953	-0.5971	
Deletion Peak  8 - CN values	6p25.3  	chr6:1-6001716(probes 570337:573854)              	chr6:1621405-2414428(probes 570851:571362)        	chr6:1910717-1917085(probes 571060:571061)        	0.11868	    0.11674		Actual Copy Change Given	0.035524	-0.0031499	-0.040616	0.12417	-0.0038779	-0.012374	0.79952	-0.0008096	0.002554	-0.0047079	-0.040888	0.0069781	0.084209	-0.4846	0.23535	-0.35164	-0.01354	-0.34696	-0.031469	0.12917	-0.0034627	-0.10939	0.08551	0.013353	0.32519	-0.00092044	-0.71454	0.30752	0.41513	-0.5127	0.54771	0.0044411	-0.54995	-0.49141	-0.056712	0.019484	0.080456	-0.0034627	-0.2856	-0.91274	-0.2862	0.31081	0.017794	0.23159	-0.64371	0.56418	0.092895	0.0114	-0.0071958	0.0066653	-0.197	0.0023581	0.31484	-0.015604	-0.23771	0.92018	
Deletion Peak  9 - CN values	6q21    	chr6:93944741-122757952(probes 622096:637842)  	chr6:108875809-109007976(probes 630152:630227)	chr6:101240328-116234954(probes 625665:634523)	0.015461	   0.015461		Actual Copy Change Given	0.052668	-0.0056336	-0.0066286	0.1353	-0.011566	-0.33162	-0.15736	-0.0008096	-0.01074	-0.0061348	-0.019726	-0.83541	0.072473	-0.40833	0.075847	-0.02003	0.50221	-0.34423	-0.027663	-0.1301	-0.017391	-0.23924	0.11242	-0.88751	-0.023222	-0.00092044	0.39559	-0.016644	0.006109	-0.53317	-0.42353	-0.0067813	-0.54995	0.42251	-0.049318	-0.83986	-0.039529	-0.016833	-0.28549	-0.39464	-0.15784	-0.47258	-0.80319	0.028631	-0.0091658	-0.070812	0.037641	0.00083195	-0.01037	0.025812	-0.16421	-0.51406	0.37712	0.0026709	-0.94558	-1.1415	
Deletion Peak 10 - CN values	6q25.2  	chr6:151178235-171115067(probes 655499:666875)	chr6:155052439-155159219(probes 658282:658327)	chr6:154800019-155124582(probes 658164:658314)	0.16838	    0.17151		Actual Copy Change Given	0.28675	-0.0014882	-0.026456	0.1353	-0.011566	-0.63164	-0.19691	-0.0016676	-0.01074	-0.64771	-0.083988	-0.13434	0.072473	-0.46387	0	-0.016527	0.50221	-0.35091	0.00029377	-0.15918	-0.017391	-0.53353	0.15876	-0.0034627	-0.031798	-0.00092044	-0.20749	-0.34559	-0.010929	-1.0773	0.036372	-0.0067813	-0.54995	0.43035	-0.53392	0.0033299	-0.085902	-0.01268	-0.28549	-0.42527	-0.17851	-0.49492	-0.79404	-0.006237	-0.00558	-0.070812	0.029325	-0.0027707	-0.028765	0.020688	-0.16421	-0.53199	-0.12403	-0.0053992	-0.58093	-0.53031	
Deletion Peak 11 - CN values	9p23    	chr9:8310705-12693402(probes 834366:836108)      	chr9:8310705-10619051(probes 834366:835700)      	chr9:9216981-9221296(probes 835034:835035)        	0.058678	   0.098172		Actual Copy Change Given	-0.42451	0.0064234	-0.031086	0.43058	-0.47349	-0.29834	-0.58959	-0.0027707	-0.0013288	-0.65361	0	-0.7078	-0.0016629	0.36221	-0.57002	-0.093498	-0.54007	-0.3401	-0.023977	-0.34708	-0.028628	-0.29455	-0.053476	-0.87151	0.065656	-0.24672	0.25712	-0.67596	0.10322	-0.0038779	-0.052936	-0.91572	-0.54488	0.89094	0.30256	-0.0042929	-0.14181	-0.93787	0.017544	-0.39441	0.058531	0.38204	-0.32627	0.14072	-0.47694	-0.062361	0.88566	-0.75521	-0.010508	0.019783	-0.33835	-0.0096806	0.79275	0.001803	-0.26333	-0.54063	
Deletion Peak 12 - CN values	9p21.3  	chr9:21865498-22448737(probes 843261:843625)    	chr9:21959052-21977193(probes 843312:843313)    	chr9:20860496-24075081(probes 842578:844705)    	6.0681e-35	 1.3041e-34		Actual Copy Change Given	-0.43474	-0.6791	-1.2415	-0.9116	-0.90858	-0.96147	-0.58959	-0.0027707	-1.5	-1.2809	0	-1.4043	-0.9251	-0.42998	-0.57002	-0.83919	-0.037218	-0.33987	-0.061555	-0.32171	-1.1759	-0.91946	-0.053476	-1.4683	0.17966	-0.24672	0.25712	-0.68493	-1.2849	-0.0038779	-0.052936	-1.5	-0.5352	0.8689	0.30256	-1.5	-0.14181	-1.5	0.017544	-1.2777	0.058531	0.35011	-1.5	0.14072	0.023804	-0.062361	-1.207	0.59244	-0.0008316	0.031999	-0.32246	-0.023155	0.37497	0.001803	-1.5	-0.54063	
Deletion Peak 13 - CN values	9q22.33 	chr9:101830398-101979393(probes 873892:873978)	chr9:101864709-101918083(probes 873912:873947)	chr9:101903956-101907671(probes 873930:873931)	0.068736	   0.068736		Actual Copy Change Given	0.33832	0.0011823	0.28754	-0.2001	0.0014815	0.022649	-0.40922	-0.0027707	-0.90855	-0.64509	0	-1.1794	0	0.0064037	-0.0011087	-0.09286	0.41865	-0.32728	-0.024812	0.4604	-0.39808	-0.35624	0.07927	-0.87057	0.17966	-0.1239	0	-0.040176	-0.43355	-0.49996	0.35218	-0.89496	0	0.39413	-0.43953	-0.0071958	-0.14181	-0.92697	0.017544	0.36821	-0.07191	0.064181	-0.78389	0.14238	0.6353	-0.06533	-0.0015243	0.59244	-0.43951	-0.826	-0.33406	-0.023155	-0.47514	0.001803	0.2557	-0.57554	
Deletion Peak 14 - CN values	10q25.2 	chr10:83636583-133778894(probes 946181:978316)	chr10:89577212-133113573(probes 950058:978273)	chr10:89560539-89641300(probes 950053:950117)  	0.16929	    0.17151		Actual Copy Change Given	-0.07401	-0.0024577	-0.089015	0.10643	0.0083351	-0.30434	-0.099331	-0.0024938	0.01998	0.010424	-0.29722	0.0044757	-0.18707	0.47959	-0.15511	0	-0.063032	-0.0027794	-0.010289	-0.39519	-0.36522	0	0.021602	-0.14929	0.043015	-0.12715	-0.0079096	-0.019529	-0.43216	0.48489	-0.47589	0.011261	-0.0089906	-0.007472	-0.433	-0.0063668	0.0023103	-0.056698	-0.26803	-0.0026322	-0.28273	-0.19937	-0.78683	-0.052197	-0.16448	-0.080542	0.18328	-0.011798	-0.42429	-0.017735	-0.022469	-0.0094924	-0.029013	-0.0049844	-0.55207	0.72548	
Deletion Peak 15 - CN values	12p13.2 	chr12:1-133851895(probes 1056074:1130051)       	chr12:11477352-11718581(probes 1061644:1061757)	chr12:11477536-11582896(probes 1061645:1061646)	0.23106	    0.23216		Actual Copy Change Given	0.32801	0.0051721	-0.040073	0.042732	0	0.62303	0.85872	-0.0086894	-0.021179	0.074169	0.17435	-0.0069805	-0.0011087	1.3365	0.0037465	0.17985	-1.5	0.20824	-0.036129	0.16865	-0.0044312	0.038344	0.09217	-0.87938	0.29995	0.055859	0.50166	-0.054901	0.012655	0.45122	-0.078943	0.0041632	0.0066653	-0.47279	-0.012576	0.0022193	-0.0018753	-0.0085608	0.057511	0.043294	0	-0.0095426	-0.26301	0.19599	-0.00019424	-0.050252	-0.0078863	0.0044411	-0.016292	0.062223	0.2958	0.0095883	-0.4828	-0.007472	0.0016731	1.3142	
Deletion Peak 16 - CN values	13q14.11	chr13:39915647-67864428(probes 1142988:1157451)	chr13:41484888-47375865(probes 1144073:1147649)	chr13:40853126-44166875(probes 1143674:1145624)	0.014805	   0.014805		Actual Copy Change Given	-0.0045688	0.0044773	0.40077	0.69615	-0.0072748	0.12984	-0.42148	0.0016642	-0.01939	0.61281	-0.37662	-0.42197	0.10465	-0.42469	-0.076412	-0.33995	-0.43148	-0.013815	-1.2181	-0.37561	-0.02151	0.028069	0.27947	-0.011611	0.26985	0.0010204	0.27976	-0.3192	-0.00060992	-0.0091909	-0.43536	-0.0063038	0.00041593	0.46724	0.066802	-0.0077482	-0.00302	0.0004636	-0.29804	-0.012576	-0.24021	-0.71444	0.13388	-0.26074	-0.0058565	1.108	0.092315	-0.016017	0.40477	-0.019286	-0.27003	-0.52412	-0.057234	0.00055459	0.080168	-0.57551	
Deletion Peak 17 - CN values	15q13.1 	chr15:24927774-32934882(probes 1236731:1239443)	chr15:28097279-31135788(probes 1238873:1238887)	chr15:28482239-28488887(probes 1238881:1238882)	0.13153	    0.12546		Actual Copy Change Given	-0.116	0.0071528	-0.084262	-0.22409	0.019503	-0.28031	-0.43791	-0.0015243	0.019189	-0.0019399	-0.014778	0.015784	0.018803	-0.0020266	-0.21552	-0.33615	-0.022606	-0.34148	-0.65789	-0.64997	0.20915	0.028184	0.053237	0.017824	-0.060211	0.021642	-0.35215	-0.0063063	0.39795	-0.52553	-0.49423	0.029184	-0.0020784	0.43549	-0.4462	-0.00055444	0.0023581	0.027497	-0.27595	0.015521	-0.23569	0.2719	-0.30409	-0.1589	0.0069007	-0.065179	-0.40562	-0.0059522	0.037924	-0.82754	0.24482	-0.018216	-0.056444	0.0056919	-0.94467	-0.11531	
Deletion Peak 18 - CN values	16p13.3 	chr16:3764793-4013466(probes 1281658:1281808)    	chr16:3773626-3933344(probes 1281662:1281764)    	chr16:3036552-4037917(probes 1281375:1281824)    	0.0066248	  0.0066248		Actual Copy Change Given	-0.085324	-0.0043952	-0.47976	-0.38694	0.019223	0.0028722	-0.26835	-0.01279	0.016667	-0.010784	-0.35681	-0.023619	-0.024199	0.40684	-0.12517	0.16524	-0.58706	-0.34767	0.23705	0.027068	-0.80038	0.0063169	-0.30487	0.025812	-0.32762	0.0050468	0.23951	-0.39247	0.00358	-0.034385	-0.64085	0.036202	0.0069435	0.0044411	-0.11743	-0.012851	-0.015466	0.0375	-0.38514	-0.087314	0.19186	-0.56147	0.20867	-0.12701	0.022703	0.49926	-0.43018	-0.018216	0.020483	-0.85305	0.21622	-0.085486	-0.59739	-0.016841	-1.0284	-0.66826	
Deletion Peak 19 - CN values	16q23.1 	chr16:54313638-90354753(probes 1299680:1321566)	chr16:78129058-79247026(probes 1313978:1314991)	chr16:78583258-78586506(probes 1314485:1314486)	0.20572	    0.19592		Actual Copy Change Given	-0.089964	0.0021167	0.67118	0.11525	0.016565	0.049463	0.56183	-0.017803	0.02082	0.0063871	0.27229	0.15386	-0.024199	0.55007	0.019083	0.1761	0.47221	0.013074	0.29541	0.027068	-0.017941	0.0063169	0.30809	0.025812	-0.35419	0.0050468	-0.067882	-0.34857	0.0077783	-0.019589	-0.068529	0.022725	0.008892	-0.4847	-0.063838	-0.017529	-0.031531	0.022552	-0.38336	-0.45763	-0.32959	-0.16268	0.15847	0.10245	0.022703	0.49926	-0.037082	-0.018216	0.020483	0.00055459	0.25012	-0.042788	1.8043	-0.0094046	-0.62703	-0.62053	
Deletion Peak 20 - CN values	17p12   	chr17:14131834-15999789(probes 1329033:1329177)	chr17:15878311-15905595(probes 1329123:1329133)	chr17:12946229-17325950(probes 1328219:1329773)	0.00078231	 0.00078231		Actual Copy Change Given	-0.23337	0.00013851	-0.12564	0.24295	0.016146	-0.28745	-0.46059	0.062125	-0.91782	-0.63854	0.21822	-0.72674	0.10643	-0.076909	0.1604	-0.35735	-0.59081	-0.35795	-0.095338	-0.36023	-0.01037	-0.53237	-0.28182	-0.88186	0.045566	-0.2319	0.2539	-0.068069	-0.45426	-1.0862	-0.95565	0.01447	-0.55106	-0.49496	-0.93511	-0.013509	-0.037354	0.017449	-0.28335	-0.43453	-0.026441	-0.26597	-1.5	-0.024977	-0.62431	0.52396	-0.44469	-0.6433	0.013074	-0.86184	-0.40097	-0.072408	-0.57456	-0.031359	-1.3116	-0.66826	
