Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_RPKM.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_median_length_normalized.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.uncv1.mRNAseq_raw_counts.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	gp_execution_log.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	stdout.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_RPKM_log2.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.uncv1.mRNAseq_median_length_normalized.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.uncv1.mRNAseq_RPKM.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
ga2unc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_raw_counts.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_RPKM.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_median_length_normalized.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.uncv1.mRNAseq_raw_counts.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	gp_execution_log.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	stdout.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_RPKM_log2.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.uncv1.mRNAseq_median_length_normalized.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.uncv1.mRNAseq_RPKM.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
hisequnc	COADREAD.rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.data.txt	gdac.broadinstitute.org_COADREAD.Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data.Level_3.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:23	mRNAseq_Preprocess_2012062300	COADREAD.mRNAseq_raw_counts.txt	Expression_mRNAseq	Level_4	txt	gdac.broadinstitute.org_COADREAD.mRNAseq_Preprocess.Level_4.2012062300.0.0	yes
