Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	LUSC.clin.merged.picked.clindata.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table8.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table5.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table14.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V5ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V9ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V8ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	LUSC.medianexp.txt	gdac.broadinstitute.org_LUSC.mRNA_Preprocess_Median.Level_4.2012062300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	LUSC.clin.merged.picked.clindata.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table8.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table5.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	table14.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V5ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V9ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	V8ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	LUSC.clin.merged.picked.txt	gdac.broadinstitute.org_LUSC.Clinical_Pick_Tier1.Level_4.2012062300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:22	Correlate_Clinical_vs_mRNA_2012062300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LUSC.Correlate_Clinical_vs_mRNA.Level_4.2012062300.0.0	yes
