Correlate_Clinical_Cluster_nozzle Execution Log 5:43 PM Wed Aug 1, '12

Running as user: cgaadm_deadline

Correlate_Clinical_Clusters_onlysig1 cluster label file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/CESC/1590030/1.GDAC_mergedClustering.Finished/CESC.mergedcluster.txt
Correlate_Clinical_Clusters_onlysig1 clinical info file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/CESC/1551578/1.GDAC_clinicalDataPicker.Finished/CESC.clin.merged.picked.txt
Correlate_Clinical_Clusters_onlysig1 filter cluster smaller than 3
Correlate_Clinical_Clusters_onlysig1 figure height 5
Correlate_Clinical_Clusters_onlysig1 figure width 9
Correlate_Clinical_Clusters_onlysig1 survival legend position OUT
Correlate_Clinical_Clusters_onlysig1 pvalue cutoff 0.05
Correlate_Clinical_Clusters_onlysig1 qvalue cutoff 1
Correlate_Clinical_Clusters_onlysig1 make figure ALL
Correlate_Clinical_Clusters_onlysig1 nozzle ver Nozzle.R1
Correlate_Clinical_Clusters_onlysig1 options AGGREGRATED_CLUSTER
Execution Times:
Submitted: 17:43:01 01-08-12
Completed:
Elapsed: 00 hrs 00 mins 45 secs

step 1. Correlate_Clinical_Clusters_onlysig [id: 140511]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00335:32
cluster label file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/CESC/1590030/1.GDAC_mergedClustering.Finished/CESC.mergedcluster.txt
clinical info file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/CESC/1551578/1.GDAC_clinicalDataPicker.Finished/CESC.clin.merged.picked.txt
features used ALL
filter cluster smaller than 3
output name
figure height 5
figure width 9
survival legend position OUT
pvalue cutoff 0.05
qvalue cutoff 1
make figure ALL
nozzle ver Nozzle.R1
options AGGREGRATED_CLUSTER
report title
job description
Output Files:
 D2V4.png
 D2V2.pdf
 D1V4.pdf
 D1V1.pdf
 D1V1.png
 D2V3.png
 D2V4.pdf
 D2V2.png
 D1V2.png
 D1V2.pdf
 supp.table3.txt
 D1V3.pdf
 supp.table4.txt
 D2V1.pdf
 table.1.txt
 D1V3.png
 D2V1.png
 D1V4.png
 D2V3.pdf
 nozzle.html
 .lsf.out
 nozzle.RData
 stdout.txt
Execution Times:
Submitted: 17:43:01 01-08-12
Completed: 17:43:46 01-08-12
Elapsed: 00 hrs 00 mins 44 secs