Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BC-4072-01B-11D-A151-01	TCGA-BC-4073-01B-02D-A12Y-01	TCGA-BC-A10Q-01A-11D-A12Y-01	TCGA-BC-A10R-01A-11D-A12Y-01	TCGA-BC-A10S-01A-22D-A12Y-01	TCGA-BC-A10T-01A-11D-A12Y-01	TCGA-BC-A10U-01A-11D-A12Y-01	TCGA-BC-A10W-01A-11D-A12Y-01	TCGA-BC-A10X-01A-11D-A12Y-01	TCGA-BC-A10Y-01A-11D-A12Y-01	TCGA-BC-A10Z-01A-11D-A12Y-01	TCGA-BC-A110-01A-11D-A12Y-01	TCGA-BC-A112-01A-11D-A12Y-01	TCGA-BC-A216-01A-11D-A151-01	TCGA-BC-A217-01A-11D-A151-01	TCGA-CC-5258-01A-01D-A12Y-01	TCGA-CC-5260-01A-01D-A12Y-01	TCGA-CC-5261-01A-01D-A12Y-01	TCGA-CC-5262-01A-01D-A12Y-01	TCGA-CC-5263-01A-01D-A12Y-01	TCGA-CC-5264-01A-01D-A12Y-01	TCGA-CC-A1HT-01A-11D-A12Y-01	TCGA-DD-A113-01A-11D-A12Y-01	TCGA-DD-A114-01A-11D-A12Y-01	TCGA-DD-A115-01A-11D-A12Y-01	TCGA-DD-A116-01A-11D-A12Y-01	TCGA-DD-A118-01A-11D-A12Y-01	TCGA-DD-A119-01A-11D-A12Y-01	TCGA-DD-A11A-01A-11D-A12Y-01	TCGA-DD-A11B-01A-11D-A12Y-01	TCGA-DD-A11C-01A-11D-A12Y-01	TCGA-DD-A11D-01A-11D-A12Y-01	TCGA-DD-A1E9-01A-21D-A151-01	TCGA-DD-A1EA-01A-11D-A12Y-01	TCGA-DD-A1EB-01A-11D-A12Y-01	TCGA-DD-A1EC-01A-21D-A12Y-01	TCGA-DD-A1ED-01A-11D-A151-01	TCGA-DD-A1EE-01A-11D-A12Y-01	TCGA-DD-A1EF-01A-11D-A12Y-01	TCGA-DD-A1EH-01A-11D-A12Y-01	TCGA-DD-A1EI-01A-11D-A12Y-01	TCGA-DD-A1EJ-01A-11D-A151-01	TCGA-DD-A1EL-01A-11D-A151-01	TCGA-EP-A12J-01A-11D-A12Y-01	TCGA-EP-A26S-01A-11D-A16U-01	TCGA-EP-A2KA-01A-11D-A182-01	TCGA-EP-A2KB-01A-11D-A182-01	TCGA-ES-A2HS-01A-11D-A182-01	TCGA-ES-A2HT-01A-12D-A182-01	TCGA-FV-A23B-01A-11D-A16U-01	TCGA-G3-A25S-01A-11D-A16U-01	TCGA-G3-A25T-01A-11D-A16U-01	TCGA-G3-A25U-01A-11D-A16U-01	TCGA-G3-A25V-01A-11D-A16U-01	TCGA-G3-A25W-01A-11D-A16U-01	TCGA-G3-A25Y-01A-11D-A16U-01	TCGA-G3-A25Z-01A-11D-A16U-01	
Amplification Peak  1	1q22   	chr1:155006955-155021472(probes 70256:70261)    	chr1:155008611-155017925(probes 70257:70260)      	chr1:120527362-157846164(probes 67832:71715)    	0.00011941	 0.00011941		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	1	0	2	2	2	0	1	1	0	2	1	2	1	0	2	1	1	2	1	2	1	2	0	0	2	1	1	1	1	2	2	1	0	0	2	1	2	0	0	1	1	1	2	1	0	2	1	1	0	1	0	1	2	1	
Amplification Peak  2	2p24.1 	chr2:20253732-20369792(probes 141992:142066)      	chr2:20310669-20336236(probes 142023:142037)        	chr2:20310669-20336788(probes 142023:142040)      	0.24005	    0.24005		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	1	0	2	0	0	0	1	0	0	2	0	0	0	0	0	0	1	1	0	0	0	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	1	0	0	1	0	1	
Amplification Peak  3	3q26.31	chr3:172254454-172319958(probes 354126:354157)  	chr3:172270116-172294339(probes 354137:354144)    	chr3:172177765-172367652(probes 354066:354196)  	0.024659	   0.024659		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	1	0	2	0	0	0	1	2	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	
Amplification Peak  4	4q13.3 	chr4:74284687-74320109(probes 406860:406883)      	chr4:74288045-74319893(probes 406862:406882)        	chr4:74285336-74325587(probes 406861:406885)      	0.21599	    0.21599		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	2	0	1	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  5	5p15.33	chr5:953901-1300024(probes 469803:469838)            	chr5:964251-1299328(probes 469805:469837)              	chr5:964251-1308551(probes 469805:469840)            	0.21599	    0.21599		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	1	0	0	0	1	0	0	2	0	0	1	0	1	0	0	0	1	2	1	0	0	1	1	1	0	0	0	0	1	1	1	0	0	0	0	0	0	2	0	1	0	0	0	1	0	1	1	1	0	0	0	1	0	0	
Amplification Peak  6	5q31.1 	chr5:133772313-133781617(probes 541826:541829)  	chr5:133774169-133781586(probes 541827:541828)    	chr5:133774169-133784560(probes 541827:541831)  	0.21599	    0.21599		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	2	0	1	0	2	0	0	1	2	0	0	0	0	0	0	0	0	1	0	2	1	1	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	1	0	0	
Amplification Peak  7	6p21.1 	chr6:43768831-43778390(probes 596161:596163)      	chr6:43770151-43777698(probes 596162:596162)        	chr6:43588899-43982657(probes 596076:596286)      	0.0011068	  0.0011068		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	0	0	2	1	0	0	2	0	0	0	1	0	2	0	0	0	0	1	0	1	2	1	0	1	2	0	0	1	0	0	1	1	2	0	0	0	0	0	2	1	2	0	2	2	0	0	0	0	0	0	
Amplification Peak  8	6q12   	chr6:67544698-67578222(probes 606924:606962)      	chr6:67551233-67576136(probes 606925:606961)        	chr6:67551233-67578851(probes 606925:606964)      	0.22597	    0.22597		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	2	1	0	0	2	0	0	0	0	0	0	1	2	0	0	0	2	0	2	1	1	0	0	0	0	0	0	0	0	0	
Amplification Peak  9	7q21.2 	chr7:90450977-92715262(probes 712290:713821)      	chr7:91097836-91121059(probes 712753:712768)        	chr7:90453079-92716001(probes 712291:713823)      	0.18359	    0.18359		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	1	0	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	1	2	0	1	0	0	0	1	0	0	0	0	0	
Amplification Peak 10	8q24.13	chr8:117662812-136017929(probes 812283:825210)  	chr8:123794311-124404324(probes 816433:816794)    	chr8:123794311-124416115(probes 816433:816797)  	0.22781	    0.22781		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	0	0	2	1	1	2	0	0	0	0	0	0	0	2	0	1	1	0	1	1	1	0	0	2	1	2	1	0	2	0	2	0	0	1	0	2	2	0	2	0	2	2	0	2	1	2	2	0	0	1	1	0	1	0	1	
Amplification Peak 11	11q13.3	chr11:69448576-69540726(probes 1015252:1015298)  	chr11:69451838-69481388(probes 1015253:1015267)    	chr11:68696706-70096144(probes 1014810:1015577)  	7.0069e-05	 7.0069e-05		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	2	0	0	
Amplification Peak 12	13q32.3	chr13:96978828-101664730(probes 1174979:1177969)	chr13:100680400-100745542(probes 1177405:1177406)	chr13:96987911-101666046(probes 1174980:1177971)	0.064496	   0.064496		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	2	0	0	1	0	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	0	2	0	0	0	0	0	0	0	
Amplification Peak 13	16q11.2	chr16:31845698-47608671(probes 1294644:1295049)  	chr16:31850300-46615361(probes 1294645:1294661)    	chr16:31850300-46634450(probes 1294645:1294664)  	0.21599	    0.21599		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	
Amplification Peak 14	17q23.1	chr17:58007194-58233621(probes 1346947:1347037)  	chr17:58011836-58167484(probes 1346948:1347005)    	chr17:58011836-58168863(probes 1346948:1347008)  	0.21599	    0.21599		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	0	0	0	1	1	0	2	1	0	1	0	2	0	0	1	0	1	0	0	0	1	1	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	2	0	0	0	2	1	1	0	2	2	1	1	0	1	0	1	
Amplification Peak 15	17q25.3	chr17:79923868-80639238(probes 1358185:1358410)  	chr17:79943476-80058235(probes 1358186:1358201)    	chr17:79943476-80639369(probes 1358186:1358412)  	0.19155	    0.21599		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	0	0	2	1	1	0	1	1	0	2	1	2	0	0	1	0	1	0	0	0	1	1	1	0	0	1	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	2	0	1	
Deletion Peak  1	1p36.23 	chr1:1-9612196(probes 1:3748)                     	chr1:8067429-8090227(probes 3018:3027)              	chr1:1-33445584(probes 1:15669)                    	1.8277e-05	 3.0083e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	1	0	1	0	0	1	0	1	0	1	1	1	1	0	0	1	0	0	1	1	0	0	1	1	1	0	0	1	0	0	0	1	1	0	1	0	0	0	0	1	1	0	1	1	0	0	0	1	1	0	
Deletion Peak  2	1p36.13 	chr1:1-51889944(probes 1:25533)                  	chr1:16449747-16725160(probes 7119:7229)          	chr1:1-33445584(probes 1:15669)                    	0.0001695	    0.18203		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	1	0	0	0	0	1	0	0	0	1	1	0	0	0	0	1	0	0	1	1	0	0	1	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	0	1	1	0	0	0	1	1	0	
Deletion Peak  3	2p15    	chr2:62413989-207632542(probes 165416:239480)  	chr2:63813459-63838260(probes 166088:166096)      	chr2:63683146-63911153(probes 166027:166134)      	0.072575	   0.072575		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  4	2q23.1  	chr2:136870324-165812718(probes 199986:216361)	chr2:148683963-148782777(probes 206546:206581)  	chr2:148734101-148747901(probes 206564:206565)  	0.07624	    0.12546		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  5	2q34    	chr2:209130293-243199373(probes 240349:260560)	chr2:211340656-211546042(probes 241608:241727)  	chr2:211448625-211452136(probes 241668:241669)  	0.0070016	   0.018511		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  6	3p21.1  	chr3:52572448-52831008(probes 289299:289423)    	chr3:52579009-52727256(probes 289302:289369)      	chr3:52628817-52821176(probes 289326:289415)      	0.049253	    0.13112		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	1	1	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	
Deletion Peak  7	3p13    	chr3:70016017-77091215(probes 300636:304839)    	chr3:70999879-71298197(probes 301233:301422)      	chr3:71072010-71454339(probes 301275:301539)      	0.043873	   0.077353		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	
Deletion Peak  8	4q22.3  	chr4:77232044-110226405(probes 408662:427437)  	chr4:96759449-100243989(probes 420067:421843)    	chr4:76511747-110106048(probes 408214:427375)    	0.00043764	  0.0007181		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	0	0	1	1	0	1	0	0	1	0	1	0	1	1	0	1	0	0	1	0	0	1	0	1	0	0	0	1	0	0	0	0	1	1	1	1	0	0	0	1	0	0	0	1	0	0	0	0	1	1	
Deletion Peak  9	4q31.3  	chr4:151178502-152025968(probes 449788:450118)	chr4:151183855-152025968(probes 449802:450118)  	chr4:151535765-151545304(probes 449961:449962)  	0.038791	   0.088246		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	1	0	0	0	1	0	0	0	0	1	1	
Deletion Peak 10	6q26    	chr6:130149997-171115067(probes 642293:666873)	chr6:163833536-164001491(probes 663613:663695)  	chr6:163832492-164159742(probes 663612:663798)  	0.07624	   0.077353		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	1	0	1	1	1	0	1	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	1	0	1	1	1	0	0	0	1	0	
Deletion Peak 11	7q33    	chr7:122339369-142569156(probes 729160:740232)	chr7:132469175-132773949(probes 734600:734779)  	chr7:132621334-132624846(probes 734690:734691)  	0.19067	    0.18203		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 12	8p23.2  	chr8:1953486-6262191(probes 748898:750828)        	chr8:2784419-4854274(probes 749024:750449)          	chr8:3520602-3544535(probes 749737:749738)          	0.0069399	  0.0069399		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	1	1	1	0	0	0	0	0	1	1	1	0	0	1	1	1	0	1	1	0	1	1	1	1	0	0	1	0	0	0	0	0	0	1	1	0	1	1	1	1	1	1	0	1	1	0	1	0	0	0	1	1	0	
Deletion Peak 13	9p21.3  	chr9:21555227-22448737(probes 843093:843623)    	chr9:21959052-21997722(probes 843310:843323)      	chr9:21408293-22984614(probes 842981:843963)      	0.00083628	 0.00086196		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	1	1	1	0	0	0	0	0	
Deletion Peak 14	10q23.31	chr10:89574877-90034038(probes 950055:950512)  	chr10:89617402-89735596(probes 950083:950271)    	chr10:89185925-90036366(probes 949836:950514)    	0.00037253	 0.00033399		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	0	1	0	2	0	0	0	1	1	0	1	0	0	1	0	1	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	
Deletion Peak 15	10q24.33	chr10:97415434-135534747(probes 954845:978781)	chr10:105003473-105014485(probes 959092:959093)	chr10:104882493-105033395(probes 959043:959104)	0.14396	    0.14811		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	1	0	
Deletion Peak 16	11q14.1 	chr11:77811864-94709358(probes 1019608:1029898)	chr11:83165646-85348794(probes 1023195:1024373)  	chr11:84185248-84189168(probes 1023785:1023786)  	0.036753	   0.036064		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	
Deletion Peak 17	13q14.2 	chr13:48833767-49064807(probes 1148646:1148897)	chr13:48875753-49060837(probes 1148669:1148895)  	chr13:48899054-49064807(probes 1148705:1148897)  	0.00039359	 0.00039359		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	1	0	1	0	1	0	1	2	0	1	0	1	0	1	1	1	1	1	0	1	0	1	1	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	
Deletion Peak 18	14q23.3 	chr14:66963153-67658112(probes 1212500:1212716)	chr14:66970921-67652098(probes 1212502:1212712)  	chr14:67346354-67586049(probes 1212600:1212682)  	0.018511	   0.018511		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	1	0	1	0	0	1	0	1	0	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	1	1	1	1	0	0	1	0	0	0	1	0	0	0	0	0	0	
Deletion Peak 19	15q21.1 	chr15:1-57032775(probes 1236199:1254001)       	chr15:47474824-48066663(probes 1247942:1248395)  	chr15:47780526-47788808(probes 1248169:1248170)  	0.085309	   0.082458		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 20	16q22.3 	chr16:51165510-90354753(probes 1297321:1321565)	chr16:72807414-73097662(probes 1310406:1310578)  	chr16:72960284-72962302(probes 1310491:1310492)  	0.087048	   0.082458		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	1	0	0	1	0	0	1	0	0	1	1	1	1	1	0	1	0	0	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	1	1	0	1	1	0	1	0	0	1	0	
Deletion Peak 21	17p12   	chr17:15891757-16121163(probes 1329131:1329227)	chr17:15892442-16101233(probes 1329132:1329221)  	chr17:15908258-15916730(probes 1329141:1329142)  	0.023906	   0.024857		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	1	0	1	0	1	1	0	0	1	1	0	1	0	1	1	0	1	1	1	0	0	0	0	1	2	1	1	0	0	1	1	0	1	1	0	0	0	0	0	1	1	1	0	0	0	0	1	0	1	1	0	1	0	1	1	1	
Deletion Peak 22	18q12.2 	chr18:24493010-51063597(probes 1370258:1386926)	chr18:36783539-37333360(probes 1377832:1378068)  	chr18:37108839-37114064(probes 1377951:1377952)  	0.091451	   0.088246		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	
Deletion Peak 23	19q13.33	chr19:1-59128983(probes 1401256:1425217)         	chr19:50822409-50926741(probes 1421835:1421875)  	chr19:50841816-50847298(probes 1421840:1421841)  	0.24685	    0.24918		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak 24	22q12.1 	chr22:28192743-29085838(probes 1486936:1487380)	chr22:28373705-29078490(probes 1487022:1487377)  	chr22:28673091-28675758(probes 1487200:1487201)  	0.021744	   0.021813		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	
Amplification Peak  1 - CN values	1q22   	chr1:155006955-155021472(probes 70256:70261)    	chr1:155008611-155017925(probes 70257:70260)      	chr1:120527362-157846164(probes 67832:71715)    	0.00011941	 0.00011941		Actual Copy Change Given	-0.0083471	0.0063402	0.3632	0.76211	0.03369	2.212	0.9024	3.192	0.055058	0.89763	0.86712	0.00090591	5.1227	0.73265	1.1266	0.62686	0.01159	1.2554	0.34924	0.537	0.97455	0.76811	1.1436	0.50089	1.5551	0	0.022654	1.091	0.76264	0.77034	0.65406	0.67882	0.97924	1.2505	0.7086	0.0011093	0	1.462	0.52231	1.3383	-0.034166	0.23441	0.41618	0.7756	0.79239	1.9258	0.79009	-0.012774	1.3372	0.74888	0.57135	0	0.79297	0.0044493	0.78427	1.0398	0.54319	
Amplification Peak  2 - CN values	2p24.1 	chr2:20253732-20369792(probes 141992:142066)      	chr2:20310669-20336236(probes 142023:142037)        	chr2:20310669-20336788(probes 142023:142040)      	0.24005	    0.24005		Actual Copy Change Given	0.45252	0.010517	0.29469	0.33529	0.0019418	0.96001	0.0053333	0	0.0005963	0.89638	-0.0044312	0.0059587	1.2933	0.003191	0.0098669	0.0062386	0.0074116	0.019363	-0.0051227	0.70536	0.72257	0.011721	0.23349	-0.047838	1.4885	-0.013953	-0.0058183	-0.018129	0.82208	-0.0075207	-0.39029	-0.0036277	0.47966	0.001803	0.027842	0.0011093	0.0011566	0.0040086	0.017193	0.019363	-0.0081624	0.11294	0.67367	-0.0099414	0.00098159	0.84988	-0.0018014	0.32063	0.0094282	-0.022332	-0.19716	0.30051	0	-0.0030053	0.36592	0.020063	0.42961	
Amplification Peak  3 - CN values	3q26.31	chr3:172254454-172319958(probes 354126:354157)  	chr3:172270116-172294339(probes 354137:354144)    	chr3:172177765-172367652(probes 354066:354196)  	0.024659	   0.024659		Actual Copy Change Given	-0.0010759	9.1804e-05	-0.0014825	0.37841	-0.0078493	2.8105	-0.0025489	-0.019131	-0.0072923	0.87219	0.90133	-0.016431	-0.33269	-0.010094	1.1368	-0.0099031	0.046185	0.051814	0.00083195	0.049002	0.019463	0.039902	-0.34354	0.10126	0.86414	0.0076629	-0.40633	0.074573	-0.29778	-0.0086252	1.6311	-0.023018	-0.18147	-0.0055375	-0.0024308	-0.010784	0.0017115	0	0.42343	-0.094328	0.066086	0.4279	0.10372	-0.0036331	-0.0075992	3.2547	0	0.33415	-0.024257	0.0029133	0.05903	-0.0047079	0.055373	-0.00092795	-0.011749	0.008892	0.037462	
Amplification Peak  4 - CN values	4q13.3 	chr4:74284687-74320109(probes 406860:406883)      	chr4:74288045-74319893(probes 406862:406882)        	chr4:74285336-74325587(probes 406861:406885)      	0.21599	    0.21599		Actual Copy Change Given	0.017916	-0.0082199	0.0041996	0.93671	-0.0043565	0.57683	-0.80493	-0.037494	-0.0017597	-0.83708	-0.90964	-0.014017	-0.32277	-0.021921	0.3827	0.5898	-0.019402	0.37808	-0.01078	0.019952	-0.55339	-0.03169	0.34161	-0.21089	0.038913	-0.66596	0.010007	-0.1958	-0.7587	0.014001	2.0894	-0.034586	-0.025424	-0.010783	-0.0057511	0.38458	0.00087921	0.0028279	-0.10835	0.36068	-0.38761	-1.0177	-0.71457	0.81025	-0.0059764	1.0024	-0.54903	-0.011413	-0.031428	-0.015741	-0.66451	-0.00069303	-0.0078116	-0.018586	-0.021784	-0.63179	-0.69532	
Amplification Peak  5 - CN values	5p15.33	chr5:953901-1300024(probes 469803:469838)            	chr5:964251-1299328(probes 469805:469837)              	chr5:964251-1308551(probes 469805:469840)            	0.21599	    0.21599		Actual Copy Change Given	-0.0047546	0.010377	0.37298	0.45445	-0.11168	0.018943	-0.006505	0.42603	-0.0054959	0.019015	1.8349	0.0020693	0.076883	0.74899	0.23705	0.48172	0.031487	0.017264	-0.005814	0.70424	1.791	0.32093	0.073258	-0.023779	0.34925	0.48458	0.40119	0.088059	0.20654	0.0036649	0.026092	0.67233	0.56284	0.65848	-0.0092039	-0.015303	0.0017115	0.14176	0.29795	-0.24509	1.9556	-0.16369	0.79654	-0.0015043	0.0095993	-0.018902	0.3669	-0.33791	0.49743	0.76983	0.33834	0.2428	0.017404	0.0037888	0.37726	-0.013815	-0.032587	
Amplification Peak  6 - CN values	5q31.1 	chr5:133772313-133781617(probes 541826:541829)  	chr5:133774169-133781586(probes 541827:541828)    	chr5:133774169-133784560(probes 541827:541831)  	0.21599	    0.21599		Actual Copy Change Given	-0.0047546	0.0089842	0.36035	-0.44555	-0.10657	1.3783	-0.024594	0.40613	0	1.5129	0.0012886	0.009995	0.3678	1.2569	-0.034223	-0.0051868	0.011967	0.0041438	-0.005814	-0.75649	-0.58916	0.064411	0.7862	-0.03498	2.4374	0.43513	0.37888	0.82255	-0.20131	0.0036649	-0.0062365	0.67233	0.55247	0.64901	-0.0046449	-0.0089906	0.0017115	0.14176	-0.16249	-0.25396	0.067397	-0.16369	-0.046461	-0.0060599	-0.0069086	0.35675	0.35586	-0.33791	0.4363	0.0041632	0.59115	0.2428	-0.012438	0.0037888	0.36936	-0.012024	0.0097483	
Amplification Peak  7 - CN values	6p21.1 	chr6:43768831-43778390(probes 596161:596163)      	chr6:43770151-43777698(probes 596162:596162)        	chr6:43588899-43982657(probes 596076:596286)      	0.0011068	  0.0011068		Actual Copy Change Given	-0.0059989	0.0066183	-0.0084385	-0.037218	0.02539	0.96843	1.4174	-0.019642	0.033697	2.6669	0.87036	0.028018	0.032309	3.0525	0.21131	0.013965	0.013508	0.66096	-0.0013657	1.2583	-0.052975	0.013632	0.0073839	0.29826	0.33124	-0.0044834	0.3901	0.9405	0.71574	-0.0023457	0.35023	2.2202	-0.17131	-0.0099565	0.69045	-0.0015243	0.0040716	0.71791	0.49001	1.3785	-0.16841	-0.15092	0.022924	0.0046666	-0.0064941	1.5709	0.36904	2.1563	-0.012532	1.2921	1.2289	-0.0030475	0.10225	-0.00037361	-0.004566	-0.0018014	-0.010094	
Amplification Peak  8 - CN values	6q12   	chr6:67544698-67578222(probes 606924:606962)      	chr6:67551233-67576136(probes 606925:606961)        	chr6:67551233-67578851(probes 606925:606964)      	0.22597	    0.22597		Actual Copy Change Given	-0.0059989	0.0007851	0.0034687	0.025812	-0.0045695	0.011668	-0.017116	-0.019642	0.018517	0.061868	0.0079078	0.00048476	0.032309	-0.0030475	0.15711	0.013965	0.43992	0.018383	-0.080915	0.51842	-0.5587	0.013632	0.014749	-0.21831	0.10833	-0.0044834	0.83736	0.975	0.5658	-0.0023457	-0.38369	2.6972	-0.19043	-0.0099565	-0.0021538	-0.077478	-0.037637	-0.78564	0.49001	1.4967	-0.16026	-0.15732	0.022924	1.5633	-0.0064941	1.0623	0.36904	0.35316	-0.012532	-0.78879	-0.67438	-0.37966	0.10225	-0.00037361	-0.02933	-0.0018014	-0.010094	
Amplification Peak  9 - CN values	7q21.2 	chr7:90450977-92715262(probes 712290:713821)      	chr7:91097836-91121059(probes 712753:712768)        	chr7:90453079-92716001(probes 712291:713823)      	0.18359	    0.18359		Actual Copy Change Given	6	0.0012012	0.741	0.39579	0.0069839	0.0023581	0.75801	-0.046845	0.028962	-0.8411	0.0083351	0.07138	0.026401	-0.013402	-0.77871	0.0042647	0.55883	-0.33098	0.018627	0.74807	1.0658	0.0043412	-0.010971	-0.010723	0.023005	0.038489	0.41856	-0.024493	0.63385	-0.0069045	0.0058309	0.66943	0.24936	-0.0034627	-0.012237	0.79596	0.00087921	0.69428	-0.16058	0.094201	0.071678	0.24343	-0.70501	0.0062511	0.8167	1.7889	-0.37876	0.34948	0.096295	0.00043548	-0.28826	0.33325	-0.0006377	0.054807	-0.014887	0.0093098	0.075991	
Amplification Peak 10 - CN values	8q24.13	chr8:117662812-136017929(probes 812283:825210)  	chr8:123794311-124404324(probes 816433:816794)    	chr8:123794311-124416115(probes 816433:816797)  	0.22781	    0.22781		Actual Copy Change Given	2.3498	0.032656	0	0.0036076	2.0991	0.58041	0.7712	1.8087	0.026275	-0.040002	-0.0032221	0.016274	0.022507	-0.0091286	-0.68085	1.4918	-0.015004	0.3256	0.40418	0.02172	0.65879	0.5029	0.56703	0	-0.033814	1.2585	0.41789	2.561	0.6501	0	1.7916	-0.012713	1.9146	-0.011107	-0.016641	0.39928	-0.0090816	1.2961	0.947	0.025671	1.2809	0.070539	0.97994	1.5307	0.0013476	3.3676	0.35692	1.3764	0.92116	-0.021647	0.086396	0.45378	0.78929	0.14049	0.36723	0	0.46639	
Amplification Peak 11 - CN values	11q13.3	chr11:69448576-69540726(probes 1015252:1015298)  	chr11:69451838-69481388(probes 1015253:1015267)    	chr11:68696706-70096144(probes 1014810:1015577)  	7.0069e-05	 7.0069e-05		Actual Copy Change Given	-0.016201	0.53286	-0.38554	-0.048748	-0.26203	0.58471	0.014394	-0.0070612	-0.0016592	-0.051687	-0.048478	-0.0013751	-0.33489	-0.0089906	-0.37759	0.015082	0.0024087	-0.01037	0	-0.082756	6	-0.039074	-0.38777	0.012717	0.33982	-0.043602	-0.001119	0.17643	0.18462	-4.8857e-05	-0.019589	-0.0049844	-0.17203	-0.00041585	0.78262	-0.0051227	-0.0017412	-0.0081624	-0.093206	0	0.061365	-0.1436	-0.0518	-0.0057551	0.0033408	1.6308	-0.0077482	-0.034855	0.0013064	-0.013339	2.6695	-0.0057947	-0.0083005	0.0009375	6	0.023426	-0.039264	
Amplification Peak 12 - CN values	13q32.3	chr13:96978828-101664730(probes 1174979:1177969)	chr13:100680400-100745542(probes 1177405:1177406)	chr13:96987911-101666046(probes 1174980:1177971)	0.064496	   0.064496		Actual Copy Change Given	-0.0017097	-0.0044779	-0.38605	-0.43528	0	-0.65512	-0.03681	3.2304	0.01152	0.0048658	1.0325	-0.011375	-0.018188	0.81318	-0.78858	0.3045	-0.53229	0.88026	-0.36635	0.6181	-0.58169	0.082621	0.3206	0.081565	-0.17044	-0.64443	-0.83801	-0.021149	0.18184	-0.0015991	0.38535	-0.022744	-0.027541	-0.0077482	-0.0057511	-0.017666	0.00032453	0.011261	-0.2115	-0.014888	-0.41279	0.31627	0.9642	-0.012564	0.00056554	0.89969	-0.012024	-0.011473	-0.020126	1.8066	-0.29004	-0.36895	0.025627	-0.004741	-0.012024	0.076279	-0.049965	
Amplification Peak 13 - CN values	16q11.2	chr16:31845698-47608671(probes 1294644:1295049)  	chr16:31850300-46615361(probes 1294645:1294661)    	chr16:31850300-46634450(probes 1294645:1294664)  	0.21599	    0.21599		Actual Copy Change Given	0.025624	0.0028664	-0.023977	-0.011749	-0.32251	-0.0041546	0.021323	4.9432	0.0083886	-0.088571	-0.0015243	0.0013755	-1.023	-0.71862	-0.33445	-0.58926	-0.53912	-0.34125	-0.33168	-0.68531	0.44303	0.033176	0.14073	-0.16059	-0.054585	-0.66467	-0.0071275	0.0065599	-0.19819	-0.78432	0.042874	0.030259	0.018443	0.011467	0	0	-0.0013386	-0.0033243	-0.24223	-0.77702	-0.41487	0.18887	0.10328	-0.0030475	0.010726	-0.012024	-0.53765	-0.39881	0.024783	-0.77201	1.837	0.13362	-0.83268	0.001429	0.022092	-0.63197	-0.0069195	
Amplification Peak 14 - CN values	17q23.1	chr17:58007194-58233621(probes 1346947:1347037)  	chr17:58011836-58167484(probes 1346948:1347005)    	chr17:58011836-58168863(probes 1346948:1347008)  	0.21599	    0.21599		Actual Copy Change Given	0.50871	-0.0033711	0.32426	-0.45134	0.052681	0.00097064	0.8161	0.69745	-0.0031443	2.3054	0.86813	0.0058197	0.61108	0.003191	1.3045	0.072596	0.24177	0.3628	0.0078236	0.6473	0.28259	0.02597	0.053664	0.4496	0.67456	0.034254	0.00076181	0.20589	0.7527	0.018614	-0.30028	0.026373	0.026996	0.67493	0.69605	0.0020805	0.0040716	-0.0083005	-0.075947	0.034691	0.11125	1.2346	0.10445	0	0.0011531	1.6268	0.30346	0.62497	0.023064	1.2884	1.1179	0.60774	0.79254	-0.052355	0.40327	0.015308	0.65423	
Amplification Peak 15 - CN values	17q25.3	chr17:79923868-80639238(probes 1358185:1358410)  	chr17:79943476-80058235(probes 1358186:1358201)    	chr17:79943476-80639369(probes 1358186:1358412)  	0.19155	    0.21599		Actual Copy Change Given	0.50871	-0.075991	0.29072	-0.24034	0.052681	1.1599	0.80434	0.76892	-0.016949	0.77147	0.73758	0.0058197	2.606	0.85601	1.4778	0.096	0.26234	0.3628	0.0078236	0.6473	0.28259	0.035806	0.087923	0.40751	0.58238	0.69353	-0.014848	0.20589	0.7527	0.018614	0.39015	0.026373	0.02759	0.67493	1.3944	0.0020805	0.0040716	-0.014898	-0.10473	0.030029	0.11125	0.26798	0.10445	0	0.0026467	-0.09142	0.29369	0.62497	0.023064	0.023847	1.0277	0.00069327	0.79254	-0.052355	1.2149	0.048688	0.65423	
Deletion Peak  1 - CN values	1p36.23 	chr1:1-9612196(probes 1:3748)                     	chr1:8067429-8090227(probes 3018:3027)              	chr1:1-33445584(probes 1:15669)                    	1.8277e-05	 3.0083e-05		Actual Copy Change Given	0.011911	-0.0039246	-0.41773	-0.013804	-0.28774	-0.64358	0.21453	-0.62608	-0.036218	-0.90582	-0.023292	-0.013022	-0.72094	0.82071	-0.39308	0.44264	-0.52758	-0.37876	-0.35544	-0.77012	0.0045408	-0.022972	-0.37008	0.096734	-0.053611	-0.65501	-0.44981	-0.12854	-0.29527	-0.80047	-0.79202	-0.70064	-0.18491	0.011958	-0.75422	0.0011093	-0.0036448	-0.023155	-0.34257	-0.79043	-0.14284	-0.54178	0	-0.0070382	-0.00068208	-0.083731	-0.53581	-0.3875	0.027556	-0.75917	-0.38441	0	0.032292	-0.25306	-0.781	-0.65112	-0.027261	
Deletion Peak  2 - CN values	1p36.13 	chr1:1-51889944(probes 1:25533)                  	chr1:16449747-16725160(probes 7119:7229)          	chr1:1-33445584(probes 1:15669)                    	0.0001695	    0.18203		Actual Copy Change Given	0.011911	0.0064792	-0.41679	-0.0073339	-0.28774	-0.64574	0.21453	-0.62608	-0.036218	-0.053276	0.025828	-0.0064509	-0.72094	0.74085	0.092315	-0.21226	-0.52758	-1.0221	0.0036042	-0.033103	0.0045408	-0.022972	-0.3685	0.096734	-0.070402	-0.65501	-0.44981	-0.12854	-0.29527	-0.80047	-0.79469	0.053237	-0.18491	0.011958	0.020686	0.0011093	-0.0036448	-0.023155	-0.34567	-0.78311	-0.14284	-0.54178	0	-0.0070382	-0.00068208	0.38518	-0.53581	-0.3875	0.027556	-0.77529	-0.38329	0	0.01419	0.010049	-0.38612	-0.6418	-0.027261	
Deletion Peak  3 - CN values	2p15    	chr2:62413989-207632542(probes 165416:239480)  	chr2:63813459-63838260(probes 166088:166096)      	chr2:63683146-63911153(probes 166027:166134)      	0.072575	   0.072575		Actual Copy Change Given	0.44656	-0.54253	0.28989	0.22901	0.0019418	0.49182	0.0053333	0	0.002261	-0.20199	-0.85821	0.0043936	0.0063284	-0.77515	-0.0011087	0	0.0074116	0.019363	-0.0051227	-0.0096513	-0.54696	0.020623	0.23349	-0.047838	0.058509	-0.0097808	0.00020715	-0.022775	0.92178	-0.012016	-0.78235	-0.0036277	0.14034	0.001803	0.014064	0.0011093	0.0057393	-0.0015619	0.017193	0.019363	-0.0081624	0.10712	0.67816	0.0015255	0.00098159	-0.03885	-0.0018014	0.31209	0	-0.022332	-0.18501	0.30266	0	-0.0030053	0.33128	-0.027173	0.42961	
Deletion Peak  4 - CN values	2q23.1  	chr2:136870324-165812718(probes 199986:216361)	chr2:148683963-148782777(probes 206546:206581)  	chr2:148734101-148747901(probes 206564:206565)  	0.07624	    0.12546		Actual Copy Change Given	0.44009	-0.0015867	0.30487	0.38601	-0.0078802	-0.019589	-0.0019399	-0.026819	-0.0028057	-0.19042	-0.0036011	-0.05657	0.018131	-0.0091286	0.018357	-0.027755	0	-0.021352	-0.0051227	0.00072267	-0.53801	0.026456	0.23349	-0.038518	-1.0724	-0.0029091	0.011051	-0.021424	-0.43067	-0.82377	-0.40307	-0.013715	0.12003	-0.70863	0.0049211	0.00034191	0.0057393	0.006109	0.011189	0.019363	-0.0081624	0.11566	-0.13116	0.002035	0.00098159	-0.020687	-0.0018014	0.32656	0	-0.022332	0.13194	0.30266	0	0	0.31544	-0.027173	0.44545	
Deletion Peak  5 - CN values	2q34    	chr2:209130293-243199373(probes 240349:260560)	chr2:211340656-211546042(probes 241608:241727)  	chr2:211448625-211452136(probes 241668:241669)  	0.0070016	   0.018511		Actual Copy Change Given	0.44009	0.0016174	0.30792	0.39015	-0.017903	-0.36329	-0.0081778	-0.039325	-0.0009285	-0.077009	0.96226	-0.0092778	0.018691	-0.011198	0.024152	-0.00050084	0	-0.025892	-0.0051227	0.0055823	-0.54938	0.026456	-0.87603	-0.043678	-0.30182	0.0070826	0.006202	0.17915	-0.49897	-0.017715	0.36575	-0.013715	0.11294	-0.0015243	-0.74538	0.00034191	0.0046481	0.006109	0.012165	0.024268	0	0.11566	-0.33544	0.0026357	-0.0066322	-0.012024	-0.0066432	0.32656	0	-0.022332	0.13216	0.30266	-0.017123	0	0.34442	-0.027173	0.4424	
Deletion Peak  6 - CN values	3p21.1  	chr3:52572448-52831008(probes 289299:289423)    	chr3:52579009-52727256(probes 289302:289369)      	chr3:52628817-52821176(probes 289326:289415)      	0.049253	    0.13112		Actual Copy Change Given	0	0.0030053	-0.39991	-0.14701	0.039123	0.72622	-0.0025489	-0.021471	-0.0072923	-0.015395	-0.941	-0.002178	-0.32075	0.62843	-0.81901	-0.58878	-0.52763	0.051814	0.0034597	-0.74462	-0.0044703	0.030716	-0.33618	0.083784	-0.018902	0.023847	-0.44669	0.084955	0.020548	0.008286	0.31274	-0.0080244	-0.17228	-0.71069	0.0070068	-0.010784	0.0017115	0	-0.38375	-0.088563	0.066086	0.4348	0.052016	0.004431	-0.0075992	-0.047124	0	0.33415	5.3984e-05	0.015028	0.042965	-0.37132	0.088692	-0.00092795	-0.0092666	-0.023946	0.032845	
Deletion Peak  7 - CN values	3p13    	chr3:70016017-77091215(probes 300636:304839)    	chr3:70999879-71298197(probes 301233:301422)      	chr3:71072010-71454339(probes 301275:301539)      	0.043873	   0.077353		Actual Copy Change Given	0	-1.077	-0.38728	-0.14507	0.0023774	0.012097	-0.0025489	-0.021471	-0.0072923	0.036867	-0.0016687	-0.0098502	-0.32075	0.006109	-0.86073	0.01634	-0.52763	0.051814	-0.0012473	-0.74845	-0.0069429	0.030716	-0.33981	0.10256	0.035242	0.023847	0.010772	0.084955	-1.2878	0.008286	0.31932	-0.024738	-0.17228	0.0027745	0.0070068	-0.010784	0.0017115	0	0.43893	-0.088563	0.066086	0.4348	0.064399	0.00055459	-0.0075992	-0.054151	0	0.33415	-0.021878	0.0091705	0.042965	-0.37132	0.082872	-0.00092795	-0.0092666	-0.0050258	0.040468	
Deletion Peak  8 - CN values	4q22.3  	chr4:77232044-110226405(probes 408662:427437)  	chr4:96759449-100243989(probes 420067:421843)    	chr4:76511747-110106048(probes 408214:427375)    	0.00043764	  0.0007181		Actual Copy Change Given	-0.058191	-0.020459	0.0091705	0.36953	-0.022321	-0.64309	-0.8117	-0.037494	-0.0020236	-0.83756	-0.91829	-0.014017	-0.33125	-0.021921	-0.26052	-0.66583	-0.019402	-0.33455	-0.01078	-0.7162	-0.56398	-0.038714	-0.41047	-0.21089	0.04429	-0.66596	0.010007	-0.1958	-0.7587	0.014001	-0.77905	-0.034586	-0.025424	-0.010783	-0.75905	0.38458	0.00087921	0.0066653	-0.12388	-0.59361	-0.39692	-1.051	-0.71457	0.0033299	-0.0059764	0.010006	-0.54693	0	-0.031428	-0.015741	-0.68016	-0.00069303	-0.013677	-0.018586	-0.021784	-0.62225	-0.70185	
Deletion Peak  9 - CN values	4q31.3  	chr4:151178502-152025968(probes 449788:450118)	chr4:151183855-152025968(probes 449802:450118)  	chr4:151535765-151545304(probes 449961:449962)  	0.038791	   0.088246		Actual Copy Change Given	-0.068848	-0.023886	0.007504	-0.04428	-0.015879	-0.58088	-0.0098185	-0.046857	-0.0020236	0.86227	0.0077783	0.0028855	-0.32853	-0.026441	-0.25624	-0.66537	-0.019402	-0.32303	-0.011749	0.0096179	-0.57308	-0.035448	-0.40241	-0.21089	0.044999	-0.67317	0.003336	-0.1958	-0.77221	-0.81633	0.0058309	-0.034586	-0.025424	-0.0077482	-0.013752	0.38221	-0.0018472	0.0066653	-0.11723	-0.59944	-0.37471	-0.15579	-1.4586	0.0033299	-0.0059764	-0.03681	-0.54693	0	-0.035358	-0.015741	-0.68016	-0.00069303	-0.013677	-0.018586	-0.021784	-0.57081	-0.70185	
Deletion Peak 10 - CN values	6q26    	chr6:130149997-171115067(probes 642293:666873)	chr6:163833536-164001491(probes 663613:663695)  	chr6:163832492-164159742(probes 663612:663798)  	0.07624	   0.077353		Actual Copy Change Given	-0.0090721	0.0084273	-0.78538	-0.0084385	-0.0045695	0.0035707	-0.039221	0.010421	0.018517	0.012449	0.052372	-0.050652	0.024296	0.00055459	-0.054563	0.019557	-0.53233	0.018383	-0.080915	-0.80441	0.45491	-0.29497	-0.35396	-0.22841	-0.74699	-0.0044834	-0.43202	-0.38037	-1.2026	0.012745	-0.39708	0.080168	-0.18893	-0.0099565	0.010348	-0.0060904	-0.037637	-0.78564	0.48452	-0.78479	-0.17069	-0.1481	-0.019943	-0.83687	-0.0064941	-0.0051227	0.36904	-0.39389	-0.02008	-0.83271	-0.73401	-0.37966	0.12506	-0.00037361	-0.01354	-0.46948	-0.02607	
Deletion Peak 11 - CN values	7q33    	chr7:122339369-142569156(probes 729160:740232)	chr7:132469175-132773949(probes 734600:734779)  	chr7:132621334-132624846(probes 734690:734691)  	0.19067	    0.18203		Actual Copy Change Given	-0.54596	0.020436	0.741	0.39727	0.014888	-0.0010567	0.73587	-0.0055411	0.028962	-0.0064074	-0.016567	0.07138	0.018551	-0.77736	-0.80733	0.0042647	0.55883	-0.33098	0.018627	0.04163	1.0658	0.0043412	0.004719	-0.01025	0.013353	0.024127	0.0032596	-0.024493	0.040263	-0.0069045	0.70607	0.68161	0.26254	-0.0034627	-0.0053363	0.79596	-0.0030279	0.68868	-0.15587	0.094201	0.071678	0.24343	-0.71403	0.0090312	0.8167	0.95488	-0.38302	0.34948	0.096295	0.00043548	-0.29872	0.33325	-0.0006377	0.27368	-0.014887	0.013492	0.060508	
Deletion Peak 12 - CN values	8p23.2  	chr8:1953486-6262191(probes 748898:750828)        	chr8:2784419-4854274(probes 749024:750449)          	chr8:3520602-3544535(probes 749737:749738)          	0.0069399	  0.0069399		Actual Copy Change Given	-0.59247	0.010935	0.011364	-0.4462	-0.7284	-0.65901	-0.79861	-0.0029127	0.026275	-0.006424	0.010703	-0.061748	-1.0609	-0.77795	-1.2379	-0.28473	-0.013902	-0.70916	-0.3605	-0.74897	-0.046757	-0.45018	-0.86082	-0.00063183	-0.75651	-0.67039	-0.86452	-0.9867	0.34363	0.054325	-0.7842	-0.012713	-0.10927	0.0086135	0.0061723	0.3908	-0.0090816	-0.77065	-0.63142	0.025671	-0.41168	-0.81838	-0.70544	-0.83098	-0.86962	-0.56674	0.35692	-0.76948	-0.51146	-0.01106	-1.0999	0.0051852	-0.010922	-0.16404	-0.40299	-0.6192	0.46133	
Deletion Peak 13 - CN values	9p21.3  	chr9:21555227-22448737(probes 843093:843623)    	chr9:21959052-21997722(probes 843310:843323)      	chr9:21408293-22984614(probes 842981:843963)      	0.00083628	 0.00086196		Actual Copy Change Given	-0.56816	-0.47779	-0.13623	-0.42701	-0.64246	0.011539	-0.776	-0.0059618	-9.5741e-05	0.00027193	0.018319	-0.00083409	-0.31591	0.0056919	0.19542	-0.62964	0.015498	-0.0019399	0.003191	-0.15807	0.46022	-0.13052	-0.38073	0.0046414	-0.33318	-1.196	-0.025689	-0.2054	-0.32409	-0.79639	-0.36204	-0.0056206	0	0.0016642	-0.0069948	-0.004699	0.0021152	-0.0047079	-0.11044	-0.098192	-0.23741	-0.15726	-0.70287	-0.0051551	0.0019548	-0.529	-1.5	-0.016695	-0.0028509	-0.78345	-0.69688	-0.35761	0.76765	-0.011845	-0.0014334	-0.047238	-0.012205	
Deletion Peak 14 - CN values	10q23.31	chr10:89574877-90034038(probes 950055:950512)  	chr10:89617402-89735596(probes 950083:950271)    	chr10:89185925-90036366(probes 949836:950514)    	0.00037253	 0.00033399		Actual Copy Change Given	-0.00018546	-0.51561	-0.3983	-0.43594	0.02539	-0.0090372	0.011958	-0.67396	0.030775	-1.3848	-0.020138	0.006654	-0.013512	-1.1912	-0.34354	0.022639	-0.54447	-0.0501	4.1129e-05	-0.72706	-0.16256	-0.30281	0.26671	-0.23344	-0.70325	0.021012	-0.41416	-0.041714	-0.2771	0.019173	-0.36906	0.00088112	0.0058908	0.001803	-0.00090713	-0.0053992	-0.00092295	-0.0025518	0.09587	0.053094	0.056655	0.007926	-0.32513	-0.00055444	0.0024179	-0.01409	0.68608	0.37216	-0.00083486	0.0070826	0.031171	-0.36318	-0.84472	0.032324	-0.0083801	0.0051715	-0.022744	
Deletion Peak 15 - CN values	10q24.33	chr10:97415434-135534747(probes 954845:978781)	chr10:105003473-105014485(probes 959092:959093)	chr10:104882493-105033395(probes 959043:959104)	0.14396	    0.14811		Actual Copy Change Given	-0.00018546	-0.51633	-0.3983	-0.43072	0.02539	-0.043466	0.0085966	-0.67396	0.030775	-0.01677	-0.014136	0.006654	-0.32934	-0.023018	0.036935	0.022639	-0.54447	-0.091684	4.1129e-05	0.59588	-0.16256	-0.30281	0.26671	-0.23344	-0.73782	0.021012	0.0050656	-0.041714	-0.74972	0.019173	-1.1402	0.00088112	0.0032679	0.001803	-0.014083	-0.0053992	-0.00092295	-0.0025518	0.09587	0.053094	0.056655	0.007926	-0.32469	-0.00055444	0.0024179	-0.03395	0.68608	0.34551	-0.00083486	0.0070826	0.031171	-0.36318	-0.84472	0.032324	-0.0054464	-0.48544	-0.029994	
Deletion Peak 16 - CN values	11q14.1 	chr11:77811864-94709358(probes 1019608:1029898)	chr11:83165646-85348794(probes 1023195:1024373)  	chr11:84185248-84189168(probes 1023785:1023786)  	0.036753	   0.036064		Actual Copy Change Given	-0.016201	-0.52239	-0.38554	0.0069435	-0.26203	-0.0008316	0.1252	-0.0070612	0.00018033	-0.027234	0.0040243	0.0026495	-0.33489	-0.0095426	-0.27881	0.015082	0.0024087	-0.01037	0	-0.7402	-0.57541	-0.039074	-0.38777	0.012717	0.39098	-0.054638	-0.001119	0.17643	-0.85535	-4.8857e-05	0.0011093	-0.0049844	-0.17203	-0.00041585	0.0036339	-0.0051227	-0.0017412	-0.0081624	-0.093206	0	0.061365	-0.1436	-0.0518	-0.0057551	0.0033408	-0.038118	-0.0077482	-0.016429	-0.0082425	-0.013339	-0.64221	-0.016182	0.015072	0.0009375	-0.010232	0.023426	-0.0096806	
Deletion Peak 17 - CN values	13q14.2 	chr13:48833767-49064807(probes 1148646:1148897)	chr13:48875753-49060837(probes 1148669:1148895)  	chr13:48899054-49064807(probes 1148705:1148897)  	0.00039359	 0.00039359		Actual Copy Change Given	-0.0017097	-0.012347	-0.38605	-0.43307	0	-0.63718	-0.038444	-0.69839	0.01152	-0.83745	-1.5	-0.067241	-0.32686	-0.01106	-1.0484	-0.29776	-0.53233	-0.947	-0.36446	-0.73615	-0.57262	-0.23613	-0.34618	-0.23747	-0.9113	-0.68274	-0.81802	-0.017328	-0.31149	-0.0015991	-0.40214	-0.022744	-0.018688	-0.0077482	-0.011686	-0.017666	0.00032453	0.010409	-0.20641	-0.019452	-0.41003	0.14088	0.023765	-0.010592	-0.0058031	-0.031496	-0.012024	-0.016966	-0.017746	-0.035857	-0.61565	-0.36895	0.00458	-0.0028669	-0.02384	-0.44814	-0.062226	
Deletion Peak 18 - CN values	14q23.3 	chr14:66963153-67658112(probes 1212500:1212716)	chr14:66970921-67652098(probes 1212502:1212712)  	chr14:67346354-67586049(probes 1212600:1212682)  	0.018511	   0.018511		Actual Copy Change Given	0.0020336	-0.62268	-0.38973	-0.037762	0.013837	-0.0027325	-0.061286	-0.0035239	-0.03123	-0.0024219	-0.87747	-0.0031972	-0.33881	-0.46472	0.10438	-0.64721	-0.18315	-0.33733	0.0020805	-0.0065603	-0.5759	-0.29638	-0.43116	0.097817	-0.21441	0.02037	-0.40898	0.19449	-1.2071	0.018261	-0.52553	0	-0.3219	-0.0040162	0.73653	-0.0016629	0.0015728	-0.00097017	-0.070353	0.037782	-0.41311	-0.40771	-0.70806	-0.806	-0.00058784	-0.051316	-0.54844	0.32076	-0.0056176	0.006109	-0.65187	-0.0034627	0.0052749	-0.0057247	0.0038854	-0.0076034	0	
Deletion Peak 19 - CN values	15q21.1 	chr15:1-57032775(probes 1236199:1254001)       	chr15:47474824-48066663(probes 1247942:1248395)  	chr15:47780526-47788808(probes 1248169:1248170)  	0.085309	   0.082458		Actual Copy Change Given	0.0098678	0.0074748	0.35332	-0.015191	0.033538	0.017963	0.012516	-0.6668	0.0099025	0.73313	0.0090312	0.0041565	-0.31982	0.0029133	-0.4661	-0.26175	0.024104	0	0.0012481	-0.013235	-0.56379	-0.019726	-0.33382	-0.23637	-0.72641	0.018103	-0.0032559	0	-0.27649	0.028968	0.0052749	0.014881	-0.14098	0.00047585	0.0024212	0.0027289	-0.00036861	-0.0078863	-0.087779	0.081177	-0.16853	-0.13496	-0.7068	-0.0092616	0.0027258	-0.0066432	-0.37234	0.32592	0.0057503	0.017684	0.049774	0.32527	0.0030908	0.00031953	0.010564	0.00083195	-0.27739	
Deletion Peak 20 - CN values	16q22.3 	chr16:51165510-90354753(probes 1297321:1321565)	chr16:72807414-73097662(probes 1310406:1310578)  	chr16:72960284-72962302(probes 1310491:1310492)  	0.087048	   0.082458		Actual Copy Change Given	-0.55159	0.0038385	-0.023977	-0.44508	-0.32251	0.0079175	0.021323	-0.65185	0.0083886	-0.13581	-0.9051	-0.00026947	0.03654	-0.73845	-0.36249	-0.58926	-0.53912	-0.34125	0.016565	-0.7358	0.44303	0.036935	-0.59097	-0.16059	-0.053071	-0.66605	-0.0071275	0.0065599	-0.72708	-0.78479	0.051814	0.014581	0.018443	0.011467	-0.0045463	0	-0.0013386	0.00097064	-0.24332	-0.77702	-0.41487	-0.5572	0.10226	-0.00013858	0.010726	-0.022744	-0.54249	-0.38493	0.024783	-0.77201	-0.62288	0.13362	-0.85673	0.001429	0.022092	-0.63197	-0.014228	
Deletion Peak 21 - CN values	17p12   	chr17:15891757-16121163(probes 1329131:1329227)	chr17:15892442-16101233(probes 1329132:1329221)  	chr17:15908258-15916730(probes 1329141:1329142)  	0.023906	   0.024857		Actual Copy Change Given	-0.54317	-1.0106	0.32426	-0.4755	0.057657	-0.63396	-0.78074	0.07207	-0.0022176	-0.88006	-0.91132	-0.11954	-0.71076	0.023566	-0.84106	-0.55933	1.3041	-0.36918	-0.34927	-0.74035	0.28259	-0.28483	0.088258	-0.25195	-0.76638	-1.3588	-0.41953	-0.55991	0.24567	0.018614	-0.77158	-0.71515	0.026996	-0.71946	-0.76738	0.0052749	-0.0029377	-0.0083005	-0.060414	0.034691	-0.39653	-0.54481	-0.70743	0	0.0011531	-0.068931	0.30005	-0.77939	0.023064	-0.77265	-0.43587	0.0036076	-0.82725	-0.052355	-0.37087	-0.64546	-0.70073	
Deletion Peak 22 - CN values	18q12.2 	chr18:24493010-51063597(probes 1370258:1386926)	chr18:36783539-37333360(probes 1377832:1378068)  	chr18:37108839-37114064(probes 1377951:1377952)  	0.091451	   0.088246		Actual Copy Change Given	0.076806	-0.0017097	0.0072217	-0.40893	0.022304	0.011539	-0.7842	0.015863	-0.021961	0.021956	0.015866	-0.0036123	-0.31036	-1.2757	-0.31287	0.013298	0.022631	-0.0036011	0.0062481	0.64785	-0.074911	-0.066843	0.32834	0.069732	0.013353	0.026394	-0.40876	0.21524	-0.76189	-0.79456	0.022725	0.0051994	0.0025567	0.013632	-0.006235	-0.0015243	-0.0018927	-0.0027707	-0.097299	0.021603	0.07091	-0.15764	-0.28669	-0.0021064	0.010853	0.016624	-0.0099277	-0.37972	0.0044995	0.0026357	-0.28743	0.27521	0.0093098	-0.011431	-0.0029097	-0.0034627	-0.056307	
Deletion Peak 23 - CN values	19q13.33	chr19:1-59128983(probes 1401256:1425217)         	chr19:50822409-50926741(probes 1421835:1421875)  	chr19:50841816-50847298(probes 1421840:1421841)  	0.24685	    0.24918		Actual Copy Change Given	0.048214	-0.51726	0.28697	0.35186	0.066372	-0.03681	-0.017391	0.091586	0.023889	-0.88159	-0.043195	0.00056283	0.24672	-0.019452	-0.46472	-0.20667	0.014939	0.21821	0.010146	-0.079315	-0.095307	-0.16222	0.51054	0.056861	-0.075345	0.0019418	0.37861	0.20162	-0.24527	0.0023092	-0.033354	0.04344	0.20709	0.012795	0.030374	0.40077	-0.0052139	-0.0094046	0.40986	-0.056846	0.18224	-0.14051	0.10781	0.0033299	-0.0019289	-0.081871	0.31916	0.5359	0.040103	0.80694	0.05903	0.19147	-0.022951	0.0049297	0.019334	-0.066118	-0.71729	
Deletion Peak 24 - CN values	22q12.1 	chr22:28192743-29085838(probes 1486936:1487380)	chr22:28373705-29078490(probes 1487022:1487377)  	chr22:28673091-28675758(probes 1487200:1487201)  	0.021744	   0.021813		Actual Copy Change Given	0.023799	0.004672	-0.41377	0.73436	0.073258	-0.63953	0	0.10803	0.044475	-0.041903	0.10852	-0.0049956	0.33192	0.018243	-0.36612	0.11571	-0.38162	0.25924	0.0076392	-0.051017	-1.0994	-0.27129	-0.68931	-0.24382	-0.057789	-0.027535	0.38576	0.099525	-0.23405	0.042965	0.015866	0.73815	0.052893	0.0070508	-0.74164	0.0033299	-0.0036923	-0.015191	-0.028151	0.054518	0.092025	0.65996	0.079396	-0.0063668	0.0097386	-0.037354	-0.38055	0.62897	0.031918	0.034677	-0.33564	-0.36	-0.015191	0.0033722	0.036653	-0.0077482	-0.025893	
