
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/145942/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LIHC/1552289/1.GDAC_clinicalDataPicker.Finished/LIHC.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LIHC", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=LIHC"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=62, in cluster file=57, common to both=48
[1] 39 48
[1] "Amp Peak  1(1q22) mutation analysis"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         36                          12 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         36                          12 
[1] "Amp Peak  2(2p24.1) mutation analysis"
[1] 3
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           16                            32 
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           16                            32 
[1] "Amp Peak  3(3q26.31) mutation analysis"
[1] 3
  AMP PEAK  3(3Q26.31) MUTATED AMP PEAK  3(3Q26.31) WILD-TYPE 
                             9                             39 
  AMP PEAK  3(3Q26.31) MUTATED AMP PEAK  3(3Q26.31) WILD-TYPE 
                             9                             39 
[1] "Amp Peak  4(4q13.3) mutation analysis"
[1] 3
  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE 
                           10                            38 
  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE 
                           10                            38 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            19                             29 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            19                             29 
[1] "Amp Peak  6(5q31.1) mutation analysis"
[1] 3
  AMP PEAK  6(5Q31.1) MUTATED AMP PEAK  6(5Q31.1) WILD-TYPE 
                           18                            30 
  AMP PEAK  6(5Q31.1) MUTATED AMP PEAK  6(5Q31.1) WILD-TYPE 
                           18                            30 
[1] "Amp Peak  7(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           17                            31 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           17                            31 
[1] "Amp Peak  8(6q12) mutation analysis"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         10                          38 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         10                          38 
[1] "Amp Peak  9(7q21.2) mutation analysis"
[1] 3
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                           15                            33 
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                           15                            33 
[1] "Amp Peak 10(8q24.13) mutation analysis"
[1] 3
  AMP PEAK 10(8Q24.13) MUTATED AMP PEAK 10(8Q24.13) WILD-TYPE 
                            28                             20 
  AMP PEAK 10(8Q24.13) MUTATED AMP PEAK 10(8Q24.13) WILD-TYPE 
                            28                             20 
[1] "Amp Peak 11(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 11(11Q13.3) MUTATED AMP PEAK 11(11Q13.3) WILD-TYPE 
                             7                             41 
  AMP PEAK 11(11Q13.3) MUTATED AMP PEAK 11(11Q13.3) WILD-TYPE 
                             7                             41 
[1] "Amp Peak 12(13q32.3) mutation analysis"
[1] 3
  AMP PEAK 12(13Q32.3) MUTATED AMP PEAK 12(13Q32.3) WILD-TYPE 
                            10                             38 
  AMP PEAK 12(13Q32.3) MUTATED AMP PEAK 12(13Q32.3) WILD-TYPE 
                            10                             38 
[1] "Amp Peak 13(16q11.2) mutation analysis"
[1] 3
  AMP PEAK 13(16Q11.2) MUTATED AMP PEAK 13(16Q11.2) WILD-TYPE 
                             3                             45 
  AMP PEAK 13(16Q11.2) MUTATED AMP PEAK 13(16Q11.2) WILD-TYPE 
                             3                             45 
[1] "Amp Peak 14(17q23.1) mutation analysis"
[1] 3
  AMP PEAK 14(17Q23.1) MUTATED AMP PEAK 14(17Q23.1) WILD-TYPE 
                            21                             27 
  AMP PEAK 14(17Q23.1) MUTATED AMP PEAK 14(17Q23.1) WILD-TYPE 
                            21                             27 
[1] "Amp Peak 15(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE 
                            21                             27 
  AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE 
                            21                             27 
[1] "Del Peak  1(1p36.23) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            21                             27 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            21                             27 
[1] "Del Peak  2(1p36.13) mutation analysis"
[1] 3
  DEL PEAK  2(1P36.13) MUTATED DEL PEAK  2(1P36.13) WILD-TYPE 
                            16                             32 
  DEL PEAK  2(1P36.13) MUTATED DEL PEAK  2(1P36.13) WILD-TYPE 
                            16                             32 
[1] "Del Peak  3(2p15) mutation analysis"
[1] 3
  DEL PEAK  3(2P15) MUTATED DEL PEAK  3(2P15) WILD-TYPE 
                          5                          43 
  DEL PEAK  3(2P15) MUTATED DEL PEAK  3(2P15) WILD-TYPE 
                          5                          43 
[1] "Del Peak  4(2q23.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE 
                            5                            43 
  DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE 
                            5                            43 
[1] "Del Peak  5(2q34) mutation analysis"
[1] 3
  DEL PEAK  5(2Q34) MUTATED DEL PEAK  5(2Q34) WILD-TYPE 
                          6                          42 
  DEL PEAK  5(2Q34) MUTATED DEL PEAK  5(2Q34) WILD-TYPE 
                          6                          42 
[1] "Del Peak  6(3p21.1) mutation analysis"
[1] 3
  DEL PEAK  6(3P21.1) MUTATED DEL PEAK  6(3P21.1) WILD-TYPE 
                           10                            38 
  DEL PEAK  6(3P21.1) MUTATED DEL PEAK  6(3P21.1) WILD-TYPE 
                           10                            38 
[1] "Del Peak  7(3p13) mutation analysis"
[1] 3
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                          9                          39 
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                          9                          39 
[1] "Del Peak  8(4q22.3) mutation analysis"
[1] 3
  DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE 
                           18                            30 
  DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE 
                           18                            30 
[1] "Del Peak  9(4q31.3) mutation analysis"
[1] 3
  DEL PEAK  9(4Q31.3) MUTATED DEL PEAK  9(4Q31.3) WILD-TYPE 
                           14                            34 
  DEL PEAK  9(4Q31.3) MUTATED DEL PEAK  9(4Q31.3) WILD-TYPE 
                           14                            34 
[1] "Del Peak 10(6q26) mutation analysis"
[1] 3
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         14                          34 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         14                          34 
[1] "Del Peak 11(7q33) mutation analysis"
[1] 3
  DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE 
                          6                          42 
  DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE 
                          6                          42 
[1] "Del Peak 12(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                           27                            21 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                           27                            21 
[1] "Del Peak 13(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           18                            30 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           18                            30 
[1] "Del Peak 14(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE 
                             16                              32 
  DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE 
                             16                              32 
[1] "Del Peak 15(10q24.33) mutation analysis"
[1] 3
  DEL PEAK 15(10Q24.33) MUTATED DEL PEAK 15(10Q24.33) WILD-TYPE 
                             14                              34 
  DEL PEAK 15(10Q24.33) MUTATED DEL PEAK 15(10Q24.33) WILD-TYPE 
                             14                              34 
[1] "Del Peak 16(11q14.1) mutation analysis"
[1] 3
  DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE 
                             8                             40 
  DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE 
                             8                             40 
[1] "Del Peak 17(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            22                             26 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            22                             26 
[1] "Del Peak 18(14q23.3) mutation analysis"
[1] 3
  DEL PEAK 18(14Q23.3) MUTATED DEL PEAK 18(14Q23.3) WILD-TYPE 
                            17                             31 
  DEL PEAK 18(14Q23.3) MUTATED DEL PEAK 18(14Q23.3) WILD-TYPE 
                            17                             31 
[1] "Del Peak 19(15q21.1) mutation analysis"
[1] 3
  DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE 
                             8                             40 
  DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE 
                             8                             40 
[1] "Del Peak 20(16q22.3) mutation analysis"
[1] 3
  DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE 
                            20                             28 
  DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE 
                            20                             28 
[1] "Del Peak 21(17p12) mutation analysis"
[1] 3
  DEL PEAK 21(17P12) MUTATED DEL PEAK 21(17P12) WILD-TYPE 
                          26                           22 
  DEL PEAK 21(17P12) MUTATED DEL PEAK 21(17P12) WILD-TYPE 
                          26                           22 
[1] "Del Peak 22(18q12.2) mutation analysis"
[1] 3
  DEL PEAK 22(18Q12.2) MUTATED DEL PEAK 22(18Q12.2) WILD-TYPE 
                             9                             39 
  DEL PEAK 22(18Q12.2) MUTATED DEL PEAK 22(18Q12.2) WILD-TYPE 
                             9                             39 
[1] "Del Peak 23(19q13.33) mutation analysis"
[1] 3
  DEL PEAK 23(19Q13.33) MUTATED DEL PEAK 23(19Q13.33) WILD-TYPE 
                              4                              44 
  DEL PEAK 23(19Q13.33) MUTATED DEL PEAK 23(19Q13.33) WILD-TYPE 
                              4                              44 
[1] "Del Peak 24(22q12.1) mutation analysis"
[1] 3
  DEL PEAK 24(22Q12.1) MUTATED DEL PEAK 24(22Q12.1) WILD-TYPE 
                             9                             39 
  DEL PEAK 24(22Q12.1) MUTATED DEL PEAK 24(22Q12.1) WILD-TYPE 
                             9                             39 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                     "DAYSTODEATH"                     
 [3] "DAYSTOLASTFOLLOWUP"               "VITALSTATUS"                     
 [5] "DCCUPLOADDATE"                    "PRIMARYSITEOFDESEASE"            
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "DAYSTOLASTKNOWNALIVE"             "HISTOLOGICALTYPE"                
[11] "NEOADJUVANTTHERAPY"               "BATCHNUMBER"                     

Input Data has 12 rows and 48 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
NULL
Variable 1:'AGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 2:'DAYSTODEATH':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "VITALSTATUS" "GENDER"     
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 48 columns, 0 survival variables, and 2 non-survival variables.
VITALSTATUS, nv=2, binary=TRUE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q22) mutation analysis
D1V1, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  1(1Q22) MUTATED     18   18
  AMP PEAK  1(1Q22) WILD-TYPE    6    6
   clus
vv  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  0                        18                           6
  1                        18                           6
D1V2, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  1(1Q22) MUTATED     12   24
  AMP PEAK  1(1Q22) WILD-TYPE    7    5
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  FEMALE                        12                           7
  MALE                          24                           5

Clustering(2) Variable = Amp Peak  2(2p24.1) mutation analysis
D2V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.1) MUTATED      6   10
  AMP PEAK  2(2P24.1) WILD-TYPE   18   14
   clus
vv  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  0                           6                            18
  1                          10                            14
D2V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.1) MUTATED      5   11
  AMP PEAK  2(2P24.1) WILD-TYPE   14   18
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  FEMALE                           5                            14
  MALE                            11                            18

Clustering(3) Variable = Amp Peak  3(3q26.31) mutation analysis
D3V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  3(3Q26.31) MUTATED      3    6
  AMP PEAK  3(3Q26.31) WILD-TYPE   21   18
   clus
vv  AMP PEAK  3(3Q26.31) MUTATED AMP PEAK  3(3Q26.31) WILD-TYPE
  0                            3                             21
  1                            6                             18
D3V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  3(3Q26.31) MUTATED      4    5
  AMP PEAK  3(3Q26.31) WILD-TYPE   15   24
        clus
vv       AMP PEAK  3(3Q26.31) MUTATED AMP PEAK  3(3Q26.31) WILD-TYPE
  FEMALE                            4                             15
  MALE                              5                             24

Clustering(4) Variable = Amp Peak  4(4q13.3) mutation analysis
D4V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(4Q13.3) MUTATED      8    2
  AMP PEAK  4(4Q13.3) WILD-TYPE   16   22
   clus
vv  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  0                           8                            16
  1                           2                            22
D4V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(4Q13.3) MUTATED      5    5
  AMP PEAK  4(4Q13.3) WILD-TYPE   14   24
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  FEMALE                           5                            14
  MALE                             5                            24

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED      8   11
  AMP PEAK  5(5P15.33) WILD-TYPE   16   13
   clus
vv  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  0                            8                             16
  1                           11                             13
D5V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED      8   11
  AMP PEAK  5(5P15.33) WILD-TYPE   11   18
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  FEMALE                            8                             11
  MALE                             11                             18

Clustering(6) Variable = Amp Peak  6(5q31.1) mutation analysis
D6V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5Q31.1) MUTATED      7   11
  AMP PEAK  6(5Q31.1) WILD-TYPE   17   13
   clus
vv  AMP PEAK  6(5Q31.1) MUTATED AMP PEAK  6(5Q31.1) WILD-TYPE
  0                           7                            17
  1                          11                            13
D6V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5Q31.1) MUTATED      8   10
  AMP PEAK  6(5Q31.1) WILD-TYPE   11   19
        clus
vv       AMP PEAK  6(5Q31.1) MUTATED AMP PEAK  6(5Q31.1) WILD-TYPE
  FEMALE                           8                            11
  MALE                            10                            19

Clustering(7) Variable = Amp Peak  7(6p21.1) mutation analysis
D7V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED      8    9
  AMP PEAK  7(6P21.1) WILD-TYPE   16   15
   clus
vv  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  0                           8                            16
  1                           9                            15
D7V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED      6   11
  AMP PEAK  7(6P21.1) WILD-TYPE   13   18
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  FEMALE                           6                            13
  MALE                            11                            18

Clustering(8) Variable = Amp Peak  8(6q12) mutation analysis
D8V1, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED      6    4
  AMP PEAK  8(6Q12) WILD-TYPE   18   20
   clus
vv  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  0                         6                          18
  1                         4                          20
D8V2, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED      5    5
  AMP PEAK  8(6Q12) WILD-TYPE   14   24
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  FEMALE                         5                          14
  MALE                           5                          24

Clustering(9) Variable = Amp Peak  9(7q21.2) mutation analysis
D9V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7Q21.2) MUTATED      8    7
  AMP PEAK  9(7Q21.2) WILD-TYPE   16   17
   clus
vv  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  0                           8                            16
  1                           7                            17
D9V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7Q21.2) MUTATED      9    6
  AMP PEAK  9(7Q21.2) WILD-TYPE   10   23
        clus
vv       AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  FEMALE                           9                            10
  MALE                             6                            23

Clustering(10) Variable = Amp Peak 10(8q24.13) mutation analysis
D10V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8Q24.13) MUTATED     17   11
  AMP PEAK 10(8Q24.13) WILD-TYPE    7   13
   clus
vv  AMP PEAK 10(8Q24.13) MUTATED AMP PEAK 10(8Q24.13) WILD-TYPE
  0                           17                              7
  1                           11                             13
D10V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8Q24.13) MUTATED      9   19
  AMP PEAK 10(8Q24.13) WILD-TYPE   10   10
        clus
vv       AMP PEAK 10(8Q24.13) MUTATED AMP PEAK 10(8Q24.13) WILD-TYPE
  FEMALE                            9                             10
  MALE                             19                             10

Clustering(11) Variable = Amp Peak 11(11q13.3) mutation analysis
D11V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(11Q13.3) MUTATED      5    2
  AMP PEAK 11(11Q13.3) WILD-TYPE   19   22
   clus
vv  AMP PEAK 11(11Q13.3) MUTATED AMP PEAK 11(11Q13.3) WILD-TYPE
  0                            5                             19
  1                            2                             22
D11V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(11Q13.3) MUTATED      2    5
  AMP PEAK 11(11Q13.3) WILD-TYPE   17   24
        clus
vv       AMP PEAK 11(11Q13.3) MUTATED AMP PEAK 11(11Q13.3) WILD-TYPE
  FEMALE                            2                             17
  MALE                              5                             24

Clustering(12) Variable = Amp Peak 12(13q32.3) mutation analysis
D12V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(13Q32.3) MUTATED      6    4
  AMP PEAK 12(13Q32.3) WILD-TYPE   18   20
   clus
vv  AMP PEAK 12(13Q32.3) MUTATED AMP PEAK 12(13Q32.3) WILD-TYPE
  0                            6                             18
  1                            4                             20
D12V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(13Q32.3) MUTATED      4    6
  AMP PEAK 12(13Q32.3) WILD-TYPE   15   23
        clus
vv       AMP PEAK 12(13Q32.3) MUTATED AMP PEAK 12(13Q32.3) WILD-TYPE
  FEMALE                            4                             15
  MALE                              6                             23

Clustering(13) Variable = Amp Peak 13(16q11.2) mutation analysis
D13V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(16Q11.2) MUTATED      2    1
  AMP PEAK 13(16Q11.2) WILD-TYPE   22   23
   clus
vv  AMP PEAK 13(16Q11.2) MUTATED AMP PEAK 13(16Q11.2) WILD-TYPE
  0                            2                             22
  1                            1                             23
D13V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(16Q11.2) MUTATED      0    3
  AMP PEAK 13(16Q11.2) WILD-TYPE   19   26
        clus
vv       AMP PEAK 13(16Q11.2) MUTATED AMP PEAK 13(16Q11.2) WILD-TYPE
  FEMALE                            0                             19
  MALE                              3                             26

Clustering(14) Variable = Amp Peak 14(17q23.1) mutation analysis
D14V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(17Q23.1) MUTATED     10   11
  AMP PEAK 14(17Q23.1) WILD-TYPE   14   13
   clus
vv  AMP PEAK 14(17Q23.1) MUTATED AMP PEAK 14(17Q23.1) WILD-TYPE
  0                           10                             14
  1                           11                             13
D14V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(17Q23.1) MUTATED      9   12
  AMP PEAK 14(17Q23.1) WILD-TYPE   10   17
        clus
vv       AMP PEAK 14(17Q23.1) MUTATED AMP PEAK 14(17Q23.1) WILD-TYPE
  FEMALE                            9                             10
  MALE                             12                             17

Clustering(15) Variable = Amp Peak 15(17q25.3) mutation analysis
D15V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(17Q25.3) MUTATED      9   12
  AMP PEAK 15(17Q25.3) WILD-TYPE   15   12
   clus
vv  AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  0                            9                             15
  1                           12                             12
D15V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(17Q25.3) MUTATED      6   15
  AMP PEAK 15(17Q25.3) WILD-TYPE   13   14
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  FEMALE                            6                             13
  MALE                             15                             14

Clustering(16) Variable = Del Peak  1(1p36.23) mutation analysis
D16V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED     10   11
  DEL PEAK  1(1P36.23) WILD-TYPE   14   13
   clus
vv  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  0                           10                             14
  1                           11                             13
D16V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      9   12
  DEL PEAK  1(1P36.23) WILD-TYPE   10   17
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  FEMALE                            9                             10
  MALE                             12                             17

Clustering(17) Variable = Del Peak  2(1p36.13) mutation analysis
D17V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.13) MUTATED      8    8
  DEL PEAK  2(1P36.13) WILD-TYPE   16   16
   clus
vv  DEL PEAK  2(1P36.13) MUTATED DEL PEAK  2(1P36.13) WILD-TYPE
  0                            8                             16
  1                            8                             16
D17V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.13) MUTATED      7    9
  DEL PEAK  2(1P36.13) WILD-TYPE   12   20
        clus
vv       DEL PEAK  2(1P36.13) MUTATED DEL PEAK  2(1P36.13) WILD-TYPE
  FEMALE                            7                             12
  MALE                              9                             20

Clustering(18) Variable = Del Peak  3(2p15) mutation analysis
D18V1, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2P15) MUTATED      4    1
  DEL PEAK  3(2P15) WILD-TYPE   20   23
   clus
vv  DEL PEAK  3(2P15) MUTATED DEL PEAK  3(2P15) WILD-TYPE
  0                         4                          20
  1                         1                          23
D18V2, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2P15) MUTATED      2    3
  DEL PEAK  3(2P15) WILD-TYPE   17   26
        clus
vv       DEL PEAK  3(2P15) MUTATED DEL PEAK  3(2P15) WILD-TYPE
  FEMALE                         2                          17
  MALE                           3                          26

Clustering(19) Variable = Del Peak  4(2q23.1) mutation analysis
D19V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q23.1) MUTATED      3    2
  DEL PEAK  4(2Q23.1) WILD-TYPE   21   22
   clus
vv  DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  0                           3                            21
  1                           2                            22
D19V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q23.1) MUTATED      0    5
  DEL PEAK  4(2Q23.1) WILD-TYPE   19   24
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  FEMALE                           0                            19
  MALE                             5                            24

Clustering(20) Variable = Del Peak  5(2q34) mutation analysis
D20V1, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(2Q34) MUTATED      3    3
  DEL PEAK  5(2Q34) WILD-TYPE   21   21
   clus
vv  DEL PEAK  5(2Q34) MUTATED DEL PEAK  5(2Q34) WILD-TYPE
  0                         3                          21
  1                         3                          21
D20V2, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(2Q34) MUTATED      1    5
  DEL PEAK  5(2Q34) WILD-TYPE   18   24
        clus
vv       DEL PEAK  5(2Q34) MUTATED DEL PEAK  5(2Q34) WILD-TYPE
  FEMALE                         1                          18
  MALE                           5                          24

Clustering(21) Variable = Del Peak  6(3p21.1) mutation analysis
D21V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P21.1) MUTATED      6    4
  DEL PEAK  6(3P21.1) WILD-TYPE   18   20
   clus
vv  DEL PEAK  6(3P21.1) MUTATED DEL PEAK  6(3P21.1) WILD-TYPE
  0                           6                            18
  1                           4                            20
D21V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P21.1) MUTATED      7    3
  DEL PEAK  6(3P21.1) WILD-TYPE   12   26
        clus
vv       DEL PEAK  6(3P21.1) MUTATED DEL PEAK  6(3P21.1) WILD-TYPE
  FEMALE                           7                            12
  MALE                             3                            26

Clustering(22) Variable = Del Peak  7(3p13) mutation analysis
D22V1, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(3P13) MUTATED      6    3
  DEL PEAK  7(3P13) WILD-TYPE   18   21
   clus
vv  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  0                         6                          18
  1                         3                          21
D22V2, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(3P13) MUTATED      5    4
  DEL PEAK  7(3P13) WILD-TYPE   14   25
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  FEMALE                         5                          14
  MALE                           4                          25

Clustering(23) Variable = Del Peak  8(4q22.3) mutation analysis
D23V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.3) MUTATED      9    9
  DEL PEAK  8(4Q22.3) WILD-TYPE   15   15
   clus
vv  DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  0                           9                            15
  1                           9                            15
D23V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.3) MUTATED      4   14
  DEL PEAK  8(4Q22.3) WILD-TYPE   15   15
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  FEMALE                           4                            15
  MALE                            14                            15

Clustering(24) Variable = Del Peak  9(4q31.3) mutation analysis
D24V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q31.3) MUTATED      8    6
  DEL PEAK  9(4Q31.3) WILD-TYPE   16   18
   clus
vv  DEL PEAK  9(4Q31.3) MUTATED DEL PEAK  9(4Q31.3) WILD-TYPE
  0                           8                            16
  1                           6                            18
D24V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q31.3) MUTATED      3   11
  DEL PEAK  9(4Q31.3) WILD-TYPE   16   18
        clus
vv       DEL PEAK  9(4Q31.3) MUTATED DEL PEAK  9(4Q31.3) WILD-TYPE
  FEMALE                           3                            16
  MALE                            11                            18

Clustering(25) Variable = Del Peak 10(6q26) mutation analysis
D25V1, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q26) MUTATED      8    6
  DEL PEAK 10(6Q26) WILD-TYPE   16   18
   clus
vv  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  0                         8                          16
  1                         6                          18
D25V2, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q26) MUTATED      6    8
  DEL PEAK 10(6Q26) WILD-TYPE   13   21
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  FEMALE                         6                          13
  MALE                           8                          21

Clustering(26) Variable = Del Peak 11(7q33) mutation analysis
D26V1, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(7Q33) MUTATED      4    2
  DEL PEAK 11(7Q33) WILD-TYPE   20   22
   clus
vv  DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  0                         4                          20
  1                         2                          22
D26V2, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(7Q33) MUTATED      4    2
  DEL PEAK 11(7Q33) WILD-TYPE   15   27
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  FEMALE                         4                          15
  MALE                           2                          27

Clustering(27) Variable = Del Peak 12(8p23.2) mutation analysis
D27V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(8P23.2) MUTATED     13   14
  DEL PEAK 12(8P23.2) WILD-TYPE   11   10
   clus
vv  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  0                          13                            11
  1                          14                            10
D27V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(8P23.2) MUTATED      9   18
  DEL PEAK 12(8P23.2) WILD-TYPE   10   11
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  FEMALE                           9                            10
  MALE                            18                            11

Clustering(28) Variable = Del Peak 13(9p21.3) mutation analysis
D28V1, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(9P21.3) MUTATED      9    9
  DEL PEAK 13(9P21.3) WILD-TYPE   15   15
   clus
vv  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  0                           9                            15
  1                           9                            15
D28V2, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(9P21.3) MUTATED      6   12
  DEL PEAK 13(9P21.3) WILD-TYPE   13   17
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  FEMALE                           6                            13
  MALE                            12                            17

Clustering(29) Variable = Del Peak 14(10q23.31) mutation analysis
D29V1, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q23.31) MUTATED      9    7
  DEL PEAK 14(10Q23.31) WILD-TYPE   15   17
   clus
vv  DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  0                             9                              15
  1                             7                              17
D29V2, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q23.31) MUTATED      8    8
  DEL PEAK 14(10Q23.31) WILD-TYPE   11   21
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  FEMALE                             8                              11
  MALE                               8                              21

Clustering(30) Variable = Del Peak 15(10q24.33) mutation analysis
D30V1, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 15(10Q24.33) MUTATED      7    7
  DEL PEAK 15(10Q24.33) WILD-TYPE   17   17
   clus
vv  DEL PEAK 15(10Q24.33) MUTATED DEL PEAK 15(10Q24.33) WILD-TYPE
  0                             7                              17
  1                             7                              17
D30V2, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 15(10Q24.33) MUTATED      6    8
  DEL PEAK 15(10Q24.33) WILD-TYPE   13   21
        clus
vv       DEL PEAK 15(10Q24.33) MUTATED DEL PEAK 15(10Q24.33) WILD-TYPE
  FEMALE                             6                              13
  MALE                               8                              21

Clustering(31) Variable = Del Peak 16(11q14.1) mutation analysis
D31V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11Q14.1) MUTATED      5    3
  DEL PEAK 16(11Q14.1) WILD-TYPE   19   21
   clus
vv  DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  0                            5                             19
  1                            3                             21
D31V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11Q14.1) MUTATED      2    6
  DEL PEAK 16(11Q14.1) WILD-TYPE   17   23
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  FEMALE                            2                             17
  MALE                              6                             23

Clustering(32) Variable = Del Peak 17(13q14.2) mutation analysis
D32V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q14.2) MUTATED     11   11
  DEL PEAK 17(13Q14.2) WILD-TYPE   13   13
   clus
vv  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  0                           11                             13
  1                           11                             13
D32V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q14.2) MUTATED      9   13
  DEL PEAK 17(13Q14.2) WILD-TYPE   10   16
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  FEMALE                            9                             10
  MALE                             13                             16

Clustering(33) Variable = Del Peak 18(14q23.3) mutation analysis
D33V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(14Q23.3) MUTATED     12    5
  DEL PEAK 18(14Q23.3) WILD-TYPE   12   19
   clus
vv  DEL PEAK 18(14Q23.3) MUTATED DEL PEAK 18(14Q23.3) WILD-TYPE
  0                           12                             12
  1                            5                             19
D33V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(14Q23.3) MUTATED      6   11
  DEL PEAK 18(14Q23.3) WILD-TYPE   13   18
        clus
vv       DEL PEAK 18(14Q23.3) MUTATED DEL PEAK 18(14Q23.3) WILD-TYPE
  FEMALE                            6                             13
  MALE                             11                             18

Clustering(34) Variable = Del Peak 19(15q21.1) mutation analysis
D34V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q21.1) MUTATED      4    4
  DEL PEAK 19(15Q21.1) WILD-TYPE   20   20
   clus
vv  DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  0                            4                             20
  1                            4                             20
D34V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q21.1) MUTATED      3    5
  DEL PEAK 19(15Q21.1) WILD-TYPE   16   24
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  FEMALE                            3                             16
  MALE                              5                             24

Clustering(35) Variable = Del Peak 20(16q22.3) mutation analysis
D35V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q22.3) MUTATED     10   10
  DEL PEAK 20(16Q22.3) WILD-TYPE   14   14
   clus
vv  DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  0                           10                             14
  1                           10                             14
D35V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q22.3) MUTATED     10   10
  DEL PEAK 20(16Q22.3) WILD-TYPE    9   19
        clus
vv       DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  FEMALE                           10                              9
  MALE                             10                             19

Clustering(36) Variable = Del Peak 21(17p12) mutation analysis
D36V1, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(17P12) MUTATED     11   15
  DEL PEAK 21(17P12) WILD-TYPE   13    9
   clus
vv  DEL PEAK 21(17P12) MUTATED DEL PEAK 21(17P12) WILD-TYPE
  0                         11                           13
  1                         15                            9
D36V2, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(17P12) MUTATED      9   17
  DEL PEAK 21(17P12) WILD-TYPE   10   12
        clus
vv       DEL PEAK 21(17P12) MUTATED DEL PEAK 21(17P12) WILD-TYPE
  FEMALE                          9                           10
  MALE                           17                           12

Clustering(37) Variable = Del Peak 22(18q12.2) mutation analysis
D37V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(18Q12.2) MUTATED      4    5
  DEL PEAK 22(18Q12.2) WILD-TYPE   20   19
   clus
vv  DEL PEAK 22(18Q12.2) MUTATED DEL PEAK 22(18Q12.2) WILD-TYPE
  0                            4                             20
  1                            5                             19
D37V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(18Q12.2) MUTATED      4    5
  DEL PEAK 22(18Q12.2) WILD-TYPE   15   24
        clus
vv       DEL PEAK 22(18Q12.2) MUTATED DEL PEAK 22(18Q12.2) WILD-TYPE
  FEMALE                            4                             15
  MALE                              5                             24

Clustering(38) Variable = Del Peak 23(19q13.33) mutation analysis
D38V1, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(19Q13.33) MUTATED      3    1
  DEL PEAK 23(19Q13.33) WILD-TYPE   21   23
   clus
vv  DEL PEAK 23(19Q13.33) MUTATED DEL PEAK 23(19Q13.33) WILD-TYPE
  0                             3                              21
  1                             1                              23
D38V2, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(19Q13.33) MUTATED      1    3
  DEL PEAK 23(19Q13.33) WILD-TYPE   18   26
        clus
vv       DEL PEAK 23(19Q13.33) MUTATED DEL PEAK 23(19Q13.33) WILD-TYPE
  FEMALE                             1                              18
  MALE                               3                              26

Clustering(39) Variable = Del Peak 24(22q12.1) mutation analysis
D39V1, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(22Q12.1) MUTATED      7    2
  DEL PEAK 24(22Q12.1) WILD-TYPE   17   22
   clus
vv  DEL PEAK 24(22Q12.1) MUTATED DEL PEAK 24(22Q12.1) WILD-TYPE
  0                            7                             17
  1                            2                             22
D39V2, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(22Q12.1) MUTATED      6    3
  DEL PEAK 24(22Q12.1) WILD-TYPE   13   26
        clus
vv       DEL PEAK 24(22Q12.1) MUTATED DEL PEAK 24(22Q12.1) WILD-TYPE
  FEMALE                            6                             13
  MALE                              3                             26
           V1            V2 
"VITALSTATUS"      "GENDER" 
> q(save="no")
