| Correlate_Clinical_Clusters_onlysig1 cluster label file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LIHC/1590594/1.GDAC_mergedClustering.Finished/LIHC.mergedcluster.txt |
| Correlate_Clinical_Clusters_onlysig1 clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LIHC/1552289/1.GDAC_clinicalDataPicker.Finished/LIHC.clin.merged.picked.txt |
| Correlate_Clinical_Clusters_onlysig1 filter cluster smaller than | 3 |
| Correlate_Clinical_Clusters_onlysig1 figure height | 5 |
| Correlate_Clinical_Clusters_onlysig1 figure width | 9 |
| Correlate_Clinical_Clusters_onlysig1 survival legend position | OUT |
| Correlate_Clinical_Clusters_onlysig1 pvalue cutoff | 0.05 |
| Correlate_Clinical_Clusters_onlysig1 qvalue cutoff | 1 |
| Correlate_Clinical_Clusters_onlysig1 make figure | ALL |
| Correlate_Clinical_Clusters_onlysig1 nozzle ver | Nozzle.R1 |
| Correlate_Clinical_Clusters_onlysig1 options | AGGREGRATED_CLUSTER |
| Execution Times: | |
| Submitted: | 19:09:28 01-08-12 |
| Completed: | |
| Elapsed: | 00 hrs 00 mins 40 secs |
step 1. Correlate_Clinical_Clusters_onlysig [id: 141234]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00335:32
| cluster label file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LIHC/1590594/1.GDAC_mergedClustering.Finished/LIHC.mergedcluster.txt |
| clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LIHC/1552289/1.GDAC_clinicalDataPicker.Finished/LIHC.clin.merged.picked.txt |
| features used | ALL |
| filter cluster smaller than | 3 |
| output name | |
| figure height | 5 |
| figure width | 9 |
| survival legend position | OUT |
| pvalue cutoff | 0.05 |
| qvalue cutoff | 1 |
| make figure | ALL |
| nozzle ver | Nozzle.R1 |
| options | AGGREGRATED_CLUSTER |
| report title | |
| job description |
| Output Files: | |
| nozzle.html | |
| D2V2.pdf | |
| D1V1.pdf | |
| D1V1.png | |
| D2V2.png | |
| D1V2.png | |
| D1V2.pdf | |
| supp.table3.txt | |
| supp.table4.txt | |
| D2V1.pdf | |
| nozzle.RData | |
| table.1.txt | |
| D2V1.png | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 19:09:28 01-08-12 |
| Completed: | 19:10:06 01-08-12 |
| Elapsed: | 00 hrs 00 mins 38 secs |